Rw4G017040

Belongs to the cysteine synthase cystathionine beta- synthase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr4
OG0001773
Physical Location & Seq
Reverse (-)
38580533 .. 38584395
3863 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw4G017040.1

Sequence Viewer

Length: 924 bp
ATGGCAGTGGAGAAGGCTGGTATAGCTAAAGATGTTACTGAATTGATTGGGAAAACCCCATTGGTGTATCTGAACCATATTGTGGAGGGTTGTGTTGCTCGTATCGCTGCCAAATTGGAAATGATGGAGCCCTGCTCTAGTGTAAAAGACAGAATTGGTTATAGTATGATTGCAGATGCTGAGGCGAAGGGCCTTATCACACCTGGGCAGAGTGTCCTAATTGAGCCAACAAGTGGTAACACTGGCATAGGGCTAGCTTTCATGGCGGCAGCTAAACAGTACAGGCTTATCATTACAATGCCTGCTTCAATGAGTCTTGAAAGAAGAATCATCCTCCGAGCCTTCGGAGCTGAGTTGGTTCTCACAGACCCTGCAAAGGGCATGAAAGGGGCTGTTCAGAAGGCTGAGGAGATATTGGCCAAGACACCTAATGCTTACATGCTCCAGCAGTTTGAGAATCCTGCCAACCCAAAGGTACATTATGAAACCACTGGACCGGAGATATGGGAAGGCACTGGAGGGAAAGTAGATGCTTTTGTTTCTGGGATAGGTACAGGTGGAACTATAACTGGTGCAGGAAAATATCTTAAAGAGAAGAATCCTAGTGTAAAGCTGTATGGTGTGGAACCAGTTGAGAGTCCAGTCCTAACTGGAGGAAAGCCTGGTCCACACAAGATCCAAGGAATAGGTGCTGGTTTTGTCCCAGGTGTCTTGGAAGTCAATATCATTGATGAAGTCATTCAAATATCAAGTGATGAAGCAATTGAAACTGCCAAGCTTCTTGCAACAAAAGAAGGTTTGCTTGTGGGAATATCATCTGGTGCTGCTGCCGCTGCTGCAATTAGGATTGCAAAGAGACCAGAGAATGCTGGAAAGCTCATTGTTGTAAGTTGGATTGACCTTATCCTAGAATTTTTCAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000096 GO:0000097 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0003824 GO:0004124 GO:0005488 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005773 GO:0005774 GO:0005777 GO:0005829 GO:0005886 GO:0006082 GO:0006520 GO:0006534 GO:0006535 GO:0006563 GO:0006790 GO:0006807 GO:0007568 GO:0008144 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009069 GO:0009070 GO:0009507 GO:0009532 GO:0009536 GO:0009566 GO:0009567 GO:0009570 GO:0009653 GO:0009826 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0010035 GO:0010038 GO:0010043 GO:0016020 GO:0016043 GO:0016049 GO:0016053 GO:0016740 GO:0016765 GO:0019344 GO:0019752 GO:0019842 GO:0019953 GO:0022414 GO:0030154 GO:0030170 GO:0031090 GO:0032501 GO:0032502 GO:0032989 GO:0036094 GO:0040007 GO:0042221 GO:0042579 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044272 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0044703 GO:0044706 GO:0046394 GO:0046686 GO:0048037 GO:0048046 GO:0048468 GO:0048588 GO:0048589 GO:0048856 GO:0048868 GO:0048869 GO:0050662 GO:0050896 GO:0051704 GO:0060560 GO:0070279 GO:0071704 GO:0071840 GO:0071944 GO:0097159 GO:0098588 GO:0098805 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607
KEGG Pathways
Metabolic & Signaling
ko00270 ko00920 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 map00270 map00920 map01100 map01110 map01120 map01130 map01200 map01230
Pfam Domains
Protein Families
PALP

Protein Analysis

307

Amino Acids

32.32

Weight (kDa)

6.37

Isoelectric Point (pI)

32.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PALP PF00291 12 - 295 3.9e-75 Pyridoxal-phosphate dependent enzyme
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 82, 233
AciI CCGC 2 cut(s) 266, 831
AclWI GGATC 1 cut(s) 670
AcoI YGGCCR 1 cut(s) 417
AcsI RAATTY 1 cut(s) 911
AfaI GTAC 3 cut(s) 281, 477, 553
AfiI CCNNNNNNNGG 4 cut(s) 82, 233, 376, 377
AgsI TTSAA 5 cut(s) 309, 320, 743, 767, 919
AjnI CCWGG 3 cut(s) 202, 661, 703
AjuI GAANNNNNNNTTGG 2 cut(s) 44, 76
AluBI AGCT 7 cut(s) 26, 257, 272, 350, 613, 778, 877
AluI AGCT 7 cut(s) 26, 257, 272, 350, 613, 778, 877
Alw26I GTCTC 1 cut(s) 850
AlwI GGATC 1 cut(s) 670
AlwNI CAGNNNCTG 2 cut(s) 179, 371
AoxI GGCC 2 cut(s) 190, 417
ApeKI GCWGC 6 cut(s) 107, 269, 824, 827, 833, 836
ApoI RAATTY 1 cut(s) 911
Asp700I GAANNNNTTC 1 cut(s) 738
AspS9I GGNCC 3 cut(s) 190, 494, 665
AsuNHI GCTAGC 1 cut(s) 253
AvaII GGWCC 2 cut(s) 494, 665
BalI TGGCCA 1 cut(s) 419
BanII GRGCYC 1 cut(s) 132
BbvCI CCTCAGC 2 cut(s) 180, 405
BbvI GCAGC 6 cut(s) 94, 281, 811, 814, 820, 823
BccI CCATC 1 cut(s) 118
BciT130I CCWGG 3 cut(s) 204, 663, 705
BcoDI GTCTC 1 cut(s) 850
BfaI CTAG 4 cut(s) 138, 254, 603, 908
BisI GCNGC 8 cut(s) 108, 267, 270, 825, 828, 831, 834, 837
BlsI GCNGC 8 cut(s) 109, 268, 271, 826, 829, 832, 835, 838
Bme1390I CCNGG 3 cut(s) 204, 663, 705
Bme18I GGWCC 2 cut(s) 494, 665
BmgT120I GGNCC 3 cut(s) 190, 494, 665
BmiI GGNNCC 2 cut(s) 129, 627
BmrFI CCNGG 3 cut(s) 204, 663, 705
BmsI GCATC 2 cut(s) 166, 520
BmtI GCTAGC 1 cut(s) 257
BplI GAGNNNNNCTC 2 cut(s) 119, 151
BpmI CTGGAG 3 cut(s) 428, 537, 672
Bpu10I CCTNAGC 2 cut(s) 180, 405
BsaI GGTCTC 1 cut(s) 850
BsaJI CCNNGG 3 cut(s) 203, 679, 703
BsaWI WCCGGW 1 cut(s) 496
BsaXI ACNNNNNCTCC 2 cut(s) 510, 540
Bsc4I CCNNNNNNNGG 4 cut(s) 82, 233, 376, 377
Bse1I ACTGG 7 cut(s) 247, 496, 520, 574, 629, 641, 655
BseBI CCWGG 3 cut(s) 204, 663, 705
BseDI CCNNGG 3 cut(s) 203, 679, 703
BseGI GGATG 1 cut(s) 330
BseLI CCNNNNNNNGG 4 cut(s) 82, 233, 376, 377
BseMII CTCAG 3 cut(s) 171, 342, 396
BseNI ACTGG 7 cut(s) 247, 496, 520, 574, 629, 641, 655
BseRI GAGGAG 1 cut(s) 422
BseXI GCAGC 6 cut(s) 94, 281, 811, 814, 820, 823
BsgI GTGCAG 1 cut(s) 594
BshFI GGCC 2 cut(s) 192, 419
BsiSI CCGG 1 cut(s) 497
BslFI GGGAC 1 cut(s) 686
BslI CCNNNNNNNGG 4 cut(s) 82, 233, 376, 377
BsmAI GTCTC 1 cut(s) 850
BsmFI GGGAC 1 cut(s) 686
BsmI GAATGC 1 cut(s) 871
BsnI GGCC 2 cut(s) 192, 419
Bso31I GGTCTC 1 cut(s) 850
Bsp1286I GDGCHC 1 cut(s) 132
Bsp143I GATC 1 cut(s) 675
BspACI CCGC 2 cut(s) 266, 831
BspANI GGCC 2 cut(s) 192, 419
BspCNI CTCAG 3 cut(s) 172, 343, 397
BspLI GGNNCC 2 cut(s) 129, 627
BspOI GCTAGC 1 cut(s) 257
BspPI GGATC 1 cut(s) 670
BspTNI GGTCTC 1 cut(s) 850
BsrI ACTGG 7 cut(s) 247, 496, 520, 574, 629, 641, 655
BssECI CCNNGG 3 cut(s) 203, 679, 703
BssMI GATC 1 cut(s) 675
BssT1I CCWWGG 1 cut(s) 679
Bst2UI CCWGG 3 cut(s) 204, 663, 705
Bst4CI ACNGT 1 cut(s) 279
BstC8I GCNNGC 2 cut(s) 255, 303
BstDEI CTNAG 3 cut(s) 180, 351, 405
BstF5I GGATG 1 cut(s) 330
BstKTI GATC 1 cut(s) 678
BstMAI GTCTC 1 cut(s) 850
BstMBI GATC 1 cut(s) 675
BstMWI GCNNNNNNNGC 7 cut(s) 23, 104, 263, 347, 830, 833, 836
BstNI CCWGG 3 cut(s) 204, 663, 705
BstNSI RCATGY 1 cut(s) 442
BstSCI CCNGG 3 cut(s) 202, 661, 703
BstV1I GCAGC 6 cut(s) 94, 281, 811, 814, 820, 823
BstX2I RGATCY 1 cut(s) 675
BstYI RGATCY 1 cut(s) 675
BsuRI GGCC 2 cut(s) 192, 419
BtsCI GGATG 1 cut(s) 330
BtsI GCAGTG 1 cut(s) 12
BtsIMutI CAGTG 4 cut(s) 12, 240, 489, 513
Cac8I GCNNGC 2 cut(s) 255, 303
CaiI CAGNNNCTG 2 cut(s) 179, 371
Cfr13I GGNCC 3 cut(s) 190, 494, 665
Csp6I GTAC 3 cut(s) 280, 476, 552
CviAII CATG 3 cut(s) 262, 382, 439
CviQI GTAC 3 cut(s) 280, 476, 552
DdeI CTNAG 3 cut(s) 180, 351, 405
DpnI GATC 1 cut(s) 677
DpnII GATC 1 cut(s) 675
EaeI YGGCCR 1 cut(s) 417
Eco130I CCWWGG 1 cut(s) 679
Eco24I GRGCYC 1 cut(s) 132
Eco31I GGTCTC 1 cut(s) 850
Eco47I GGWCC 2 cut(s) 494, 665
EcoO109I RGGNCCY 1 cut(s) 190
EcoRII CCWGG 3 cut(s) 202, 661, 703
EcoT14I CCWWGG 1 cut(s) 679
EcoT38I GRGCYC 1 cut(s) 132
ErhI CCWWGG 1 cut(s) 679
FaeI CATG 3 cut(s) 265, 385, 442
FalI AAGNNNNNCTT 2 cut(s) 786, 818
FaqI GGGAC 1 cut(s) 686
FatI CATG 3 cut(s) 261, 381, 438
Fnu4HI GCNGC 8 cut(s) 108, 267, 270, 825, 828, 831, 834, 837
FokI GGATG 1 cut(s) 317
FriOI GRGCYC 1 cut(s) 132
Fsp4HI GCNGC 8 cut(s) 108, 267, 270, 825, 828, 831, 834, 837
FspBI CTAG 4 cut(s) 138, 254, 603, 908
GluI GCNGC 8 cut(s) 108, 267, 270, 825, 828, 831, 834, 837
GsuI CTGGAG 3 cut(s) 428, 537, 672
HaeIII GGCC 2 cut(s) 192, 419
HapII CCGG 1 cut(s) 497
Hin1II CATG 3 cut(s) 265, 385, 442
HindIII AAGCTT 1 cut(s) 776
HinfI GANTC 5 cut(s) 313, 327, 457, 598, 637
HpaII CCGG 1 cut(s) 497
Hpy166II GTNNAC 1 cut(s) 668
Hpy188I TCNGA 4 cut(s) 72, 338, 347, 399
Hpy188III TCNNGA 1 cut(s) 317
Hpy8I GTNNAC 1 cut(s) 668
HpyAV CCTTC 6 cut(s) 7, 181, 352, 394, 503, 788
HpyCH4III ACNGT 1 cut(s) 279
HpyCH4V TGCA 6 cut(s) 173, 374, 575, 785, 839, 851
HpyF10VI GCNNNNNNNGC 7 cut(s) 23, 104, 263, 347, 830, 833, 836
HpyF3I CTNAG 3 cut(s) 180, 351, 405
Hsp92II CATG 3 cut(s) 265, 385, 442
Kzo9I GATC 1 cut(s) 675
LmnI GCTCC 3 cut(s) 127, 347, 447
Lsp1109I GCAGC 6 cut(s) 94, 281, 811, 814, 820, 823
LweI GCATC 2 cut(s) 166, 520
MaeI CTAG 4 cut(s) 138, 254, 603, 908
MaeIII GTNAC 2 cut(s) 34, 236
MalI GATC 1 cut(s) 677
MboI GATC 1 cut(s) 675
MboII GAAGA 2 cut(s) 336, 607
MfeI CAATTG 1 cut(s) 762
MflI RGATCY 1 cut(s) 675
MhlI GDGCHC 1 cut(s) 132
MlsI TGGCCA 1 cut(s) 419
MluCI AATT 7 cut(s) 41, 113, 153, 219, 762, 840, 911
MluNI TGGCCA 1 cut(s) 419
MlyI GAGTC 2 cut(s) 322, 646
MmeI TCCRAC 1 cut(s) 872
MnlI CCTC 6 cut(s) 79, 175, 344, 400, 512, 647
Mox20I TGGCCA 1 cut(s) 419
MroXI GAANNNNTTC 1 cut(s) 738
MscI TGGCCA 1 cut(s) 419
MseI TTAA 1 cut(s) 588
MslI CAYNNNNRTG 1 cut(s) 296
Msp20I TGGCCA 1 cut(s) 419
MspA1I CMGCKG 1 cut(s) 833
MspI CCGG 1 cut(s) 497
MspR9I CCNGG 3 cut(s) 204, 663, 705
MunI CAATTG 1 cut(s) 762
Mva1269I GAATGC 1 cut(s) 871
MvaI CCWGG 3 cut(s) 204, 663, 705
MwoI GCNNNNNNNGC 7 cut(s) 23, 104, 263, 347, 830, 833, 836
NdeII GATC 1 cut(s) 675
NheI GCTAGC 1 cut(s) 253
NlaIII CATG 3 cut(s) 265, 385, 442
NlaIV GGNNCC 2 cut(s) 129, 627
NspI RCATGY 1 cut(s) 442
PctI GAATGC 1 cut(s) 871
PdmI GAANNNNTTC 1 cut(s) 738
PfeI GAWTC 3 cut(s) 327, 457, 598
PflMI CCANNNNNTGG 2 cut(s) 82, 233
PkrI GCNGC 8 cut(s) 109, 268, 271, 826, 829, 832, 835, 838
PleI GAGTC 2 cut(s) 321, 645
PpsI GAGTC 2 cut(s) 321, 645
Psp6I CCWGG 3 cut(s) 202, 661, 703
PspGI CCWGG 3 cut(s) 202, 661, 703
PspN4I GGNNCC 2 cut(s) 129, 627
PspPI GGNCC 3 cut(s) 190, 494, 665
PstNI CAGNNNCTG 2 cut(s) 179, 371
PsuI RGATCY 1 cut(s) 675
RsaI GTAC 3 cut(s) 281, 477, 553
RsaNI GTAC 3 cut(s) 280, 476, 552
RseI CAYNNNNRTG 1 cut(s) 296
SaqAI TTAA 1 cut(s) 588
SatI GCNGC 8 cut(s) 108, 267, 270, 825, 828, 831, 834, 837
Sau3AI GATC 1 cut(s) 675
Sau96I GGNCC 3 cut(s) 190, 494, 665
SchI GAGTC 2 cut(s) 322, 646
ScrFI CCNGG 3 cut(s) 204, 663, 705
SduI GDGCHC 1 cut(s) 132
SfaNI GCATC 2 cut(s) 166, 520
SinI GGWCC 2 cut(s) 494, 665
SmiMI CAYNNNNRTG 1 cut(s) 296
Sse9I AATT 7 cut(s) 41, 113, 153, 219, 762, 840, 911
SsiI CCGC 2 cut(s) 266, 831
SspMI CTAG 4 cut(s) 138, 254, 603, 908
StyD4I CCNGG 3 cut(s) 202, 661, 703
StyI CCWWGG 1 cut(s) 679
TaaI ACNGT 1 cut(s) 279
TasI AATT 7 cut(s) 41, 113, 153, 219, 762, 840, 911
TatI WGTACW 1 cut(s) 279
TauI GCSGC 2 cut(s) 269, 833
TfiI GAWTC 3 cut(s) 327, 457, 598
Tru1I TTAA 1 cut(s) 588
Tru9I TTAA 1 cut(s) 588
TscAI CASTG 4 cut(s) 12, 247, 496, 520
TseI GCWGC 6 cut(s) 107, 269, 824, 827, 833, 836
TspDTI ATGAA 5 cut(s) 250, 398, 498, 747, 771
TspRI CASTG 4 cut(s) 12, 247, 496, 520
Van91I CCANNNNNTGG 2 cut(s) 82, 233
VpaK11BI GGWCC 2 cut(s) 494, 665
XapI RAATTY 1 cut(s) 911
XceI RCATGY 1 cut(s) 442
XmnI GAANNNNTTC 1 cut(s) 738
XspI CTAG 4 cut(s) 138, 254, 603, 908
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.