Rorug04G0139400

Belongs to the cysteine synthase cystathionine beta- synthase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0001773
Physical Location & Seq
Forward (+)
22862700 .. 22863564
865 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0139400.1

Sequence Viewer

Length: 183 bp
ATGCTTATCGAGCTTCATGAGGAAGGAGTGGAACAAATGTTCCATCCTGGTTCTCTGTTGCTTATGGAATCACTGTGGCACGCAGCAACCGAGCTTGAAGCAAAAGAAGATGTGCGCGCGCAGCACAGGAAAGCAAATGGTTTAACAACATGGTACTCTTTTGACCACACCATCTCATTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000096 GO:0000097 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0003824 GO:0004124 GO:0005488 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005773 GO:0005774 GO:0005777 GO:0005829 GO:0005886 GO:0006082 GO:0006520 GO:0006534 GO:0006535 GO:0006563 GO:0006790 GO:0006807 GO:0007568 GO:0008144 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009069 GO:0009070 GO:0009507 GO:0009532 GO:0009536 GO:0009566 GO:0009567 GO:0009570 GO:0009653 GO:0009826 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0010035 GO:0010038 GO:0010043 GO:0016020 GO:0016043 GO:0016049 GO:0016053 GO:0016740 GO:0016765 GO:0019344 GO:0019752 GO:0019842 GO:0019953 GO:0022414 GO:0030154 GO:0030170 GO:0031090 GO:0032501 GO:0032502 GO:0032989 GO:0036094 GO:0040007 GO:0042221 GO:0042579 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044272 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0044703 GO:0044706 GO:0046394 GO:0046686 GO:0048037 GO:0048046 GO:0048468 GO:0048588 GO:0048589 GO:0048856 GO:0048868 GO:0048869 GO:0050662 GO:0050896 GO:0051704 GO:0060560 GO:0070279 GO:0071704 GO:0071840 GO:0071944 GO:0097159 GO:0098588 GO:0098805 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607
KEGG Pathways
Metabolic & Signaling
ko00270 ko00920 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 map00270 map00920 map01100 map01110 map01120 map01130 map01200 map01230
Pfam Domains
Protein Families
PALP

Protein Analysis

60

Amino Acids

6.95

Weight (kDa)

5.11

Isoelectric Point (pI)

38.63

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 117, 119
AfaI GTAC 1 cut(s) 155
AgsI TTSAA 1 cut(s) 98
AjnI CCWGG 1 cut(s) 46
AloI GAACNNNNNNTCC 4 cut(s) 23, 24, 55, 56
AluBI AGCT 2 cut(s) 13, 94
AluI AGCT 2 cut(s) 13, 94
ApeKI GCWGC 2 cut(s) 83, 121
AspLEI GCGC 3 cut(s) 117, 119, 121
BbvI GCAGC 2 cut(s) 95, 133
BccI CCATC 2 cut(s) 51, 179
BciT130I CCWGG 1 cut(s) 48
BisI GCNGC 2 cut(s) 84, 122
BlsI GCNGC 2 cut(s) 85, 123
Bme1390I CCNGG 1 cut(s) 48
BmrFI CCNGG 1 cut(s) 48
BseBI CCWGG 1 cut(s) 48
BseGI GGATG 1 cut(s) 43
BsePI GCGCGC 2 cut(s) 115, 117
BseXI GCAGC 2 cut(s) 95, 133
Bsh1236I CGCG 2 cut(s) 117, 119
BspFNI CGCG 2 cut(s) 117, 119
BspHI TCATGA 1 cut(s) 16
BssHII GCGCGC 2 cut(s) 115, 117
Bst2UI CCWGG 1 cut(s) 48
Bst4CI ACNGT 1 cut(s) 75
BstC8I GCNNGC 3 cut(s) 81, 117, 119
BstF5I GGATG 1 cut(s) 43
BstFNI CGCG 2 cut(s) 117, 119
BstHHI GCGC 3 cut(s) 117, 119, 121
BstMWI GCNNNNNNNGC 2 cut(s) 10, 121
BstNI CCWGG 1 cut(s) 48
BstSCI CCNGG 1 cut(s) 46
BstUI CGCG 2 cut(s) 117, 119
BstV1I GCAGC 2 cut(s) 95, 133
BtsCI GGATG 1 cut(s) 43
BtsIMutI CAGTG 1 cut(s) 71
Cac8I GCNNGC 3 cut(s) 81, 117, 119
CciI TCATGA 1 cut(s) 16
CfoI GCGC 3 cut(s) 117, 119, 121
Csp6I GTAC 1 cut(s) 154
CviAII CATG 2 cut(s) 17, 150
CviJI RGCY 2 cut(s) 13, 94
CviKI_1 RGCY 2 cut(s) 13, 94
CviQI GTAC 1 cut(s) 154
EcoRII CCWGG 1 cut(s) 46
FaeI CATG 2 cut(s) 20, 153
FaiI YATR 4 cut(s) 18, 65, 151, 181
FatI CATG 2 cut(s) 16, 149
Fnu4HI GCNGC 2 cut(s) 84, 122
FokI GGATG 1 cut(s) 30
Fsp4HI GCNGC 2 cut(s) 84, 122
GlaI GCGC 3 cut(s) 116, 118, 120
GluI GCNGC 2 cut(s) 84, 122
HhaI GCGC 3 cut(s) 117, 119, 121
Hin1II CATG 2 cut(s) 20, 153
Hin6I GCGC 3 cut(s) 115, 117, 119
HinP1I GCGC 3 cut(s) 115, 117, 119
HinfI GANTC 1 cut(s) 68
Hpy188III TCNNGA 1 cut(s) 17
HpyAV CCTTC 1 cut(s) 17
HpyCH4III ACNGT 1 cut(s) 75
HpyF10VI GCNNNNNNNGC 2 cut(s) 10, 121
Hsp92II CATG 2 cut(s) 20, 153
HspAI GCGC 3 cut(s) 115, 117, 119
LpnPI CCDG 3 cut(s) 33, 60, 112
Lsp1109I GCAGC 2 cut(s) 95, 133
MboII GAAGA 1 cut(s) 119
MnlI CCTC 1 cut(s) 13
MseI TTAA 1 cut(s) 143
MspR9I CCNGG 1 cut(s) 48
MvaI CCWGG 1 cut(s) 48
MvnI CGCG 2 cut(s) 117, 119
MwoI GCNNNNNNNGC 2 cut(s) 10, 121
NlaIII CATG 2 cut(s) 20, 153
PagI TCATGA 1 cut(s) 16
PauI GCGCGC 2 cut(s) 115, 117
PcsI WCGNNNNNNNCGW 1 cut(s) 87
PfeI GAWTC 1 cut(s) 68
PkrI GCNGC 2 cut(s) 85, 123
Psp6I CCWGG 1 cut(s) 46
PspGI CCWGG 1 cut(s) 46
PteI GCGCGC 2 cut(s) 115, 117
RsaI GTAC 1 cut(s) 155
RsaNI GTAC 1 cut(s) 154
SaqAI TTAA 1 cut(s) 143
SatI GCNGC 2 cut(s) 84, 122
ScrFI CCNGG 1 cut(s) 48
SetI ASST 2 cut(s) 15, 96
StyD4I CCNGG 1 cut(s) 46
TaaI ACNGT 1 cut(s) 75
TaqI TCGA 1 cut(s) 9
TfiI GAWTC 1 cut(s) 68
Tru1I TTAA 1 cut(s) 143
Tru9I TTAA 1 cut(s) 143
TscAI CASTG 1 cut(s) 78
TseI GCWGC 2 cut(s) 83, 121
TspDTI ATGAA 1 cut(s) 5
TspRI CASTG 1 cut(s) 78
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.