Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0010928.1

Orthogroup ID

OG0001773

Physical Location & Seq

Genomic Coordinates Forward (+)

20542 .. 24151

Gene Structure 3610 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0010928.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 978 bp

atggtggaagagaaggcttggattgcaaaagatgttactgaattggttggcaacactccattggtgtatctcaaccatgtcgtagatggctgcgtggcacgggttgctgctaagctggagatgatggagccttgctctagtgtcaaggataggattggatacagtatgatcacagatgctgaggagaagggtcttattaaggctggtgagagtgtcctggtcgagcctactagtggcaatactggcataggattggcgtttatggcagctgctaagggttacaaactaataatcaccatgcctgcttcaatgagtcttgaaagacgaaccattcttcgaggttttggagctgagcttgttctcacagatcccgccaaaggcatgaagggggctgttcagaaggcacaagagatagtggacaagacacccaatgcttatatgcttcagcaatttgagaaccctgcaaacccaaaggtacattatgaaactactggaccagagatctggagaggctctgctggtaaagtcgacgcctttgtttctgggatagggactggaggtacaataacaggtgctgggaagtacctcaaagagcaaaatcctgatgttaagctctacggtgtagaaccagttgaaagtgctgtcttgtctggagggcgacctggccctcacaagattcaaggaattggtgctggcttcatccctggagttttagatgtcaacctaattgatgaagttatccaaatatcaagtgaagaagcaattgaaacagccaagcgtctagcattgaaggaaggtttgttggtagggatatcatctggtgctgcagctgcagctgctattgagattgcaaggaggccagcaaatgctggaaagctcattgttgtggtcttccccagctttggagagcgttacctctcctctgtattgtttgaatctgtgaagcgggaggcagagaacatggtttttgagccctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00270 ko00920 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 map00270 map00920 map01100 map01110 map01120 map01130 map01200 map01230

Pfam Domains

Protein Families

PALP

Protein Analysis

325

Amino Acids

34.46

Weight (kDa)

5.49

Isoelectric Point (pI)

31.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001773)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22460 AT4G14880 AT4G14880 AT4G14880 AT4G14880 AT4G14880
fragaria_vesca	FvH4_4g15640 FvH4_4g15640 FvH4_4g15640 FvH4_4g15640 FvH4_4g15640 FvH4_4g15640 FvH4_4g15640 FvH4_6g03700 FvH4_6g03700 FvH4_6g03700 FvH4_6g03700 FvH4_6g03700
malus_domestica	MD04G1219000.v1.1 MD12G1236000.v1.1 MD13G1193400.v1.1 MD16G1194200.v1.1
prunus_persica	Prupe.1G014000_v2.0.a1 Prupe.6G338400_v2.0.a1 Prupe.6G338400_v2.0.a1
pyrus_communis	pycom04g19440 pycom12g21720 pycom13g16570
rosa_chinensis	RchiOBHm_Chr3g0452241 RchiOBHm_Chr4g0416171
rosa_laevigata	RLG00000008009 RLG00000025614
rosa_multiflora	Rmu_sc0001145.1_g000001 Rmu_sc0010928.1_g000004 Rmu_sc0031164.1_g000006 Rmu_sc0042623.1_g000001
rosa_roxburghii	Rroxscaffold_5G00360030 Rroxscaffold_6G00429370
rosa_rugosa	Rorug02G0639500 Rorug02G0639600 Rorug04G0139300 Rorug04G0139400 Rorug04G0139500
rosa_samantha	Rh3DG042600 Rh4BG199000
rosa_wichuraiana	Rw3G003170 Rw4G017040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	528
AciI	CCGC	2 cut(s)	372, 946
AclWI	GGATC	1 cut(s)	362
AcuI	CTGAAG	1 cut(s)	428
AcyI	GRCGYC	1 cut(s)	531
AfaI	GTAC	3 cut(s)	477, 562, 584
AfiI	CCNNNNNNNGG	3 cut(s)	233, 377, 902
AgsI	TTSAA	7 cut(s)	309, 320, 635, 680, 767, 790, 935
AhlI	ACTAGT	1 cut(s)	230
AjnI	CCWGG	3 cut(s)	216, 661, 703
AluBI	AGCT	9 cut(s)	115, 269, 350, 355, 613, 830, 836, 877, 900
AluI	AGCT	9 cut(s)	115, 269, 350, 355, 613, 830, 836, 877, 900
AlwI	GGATC	1 cut(s)	362
AlwNI	CAGNNNCTG	2 cut(s)	179, 575
AoxI	GGCC	2 cut(s)	664, 857
ApeKI	GCWGC	9 cut(s)	90, 107, 266, 269, 824, 827, 830, 833, 836
AspS9I	GGNCC	2 cut(s)	494, 665
AsuHPI	GGTGA	2 cut(s)	218, 286
AvaII	GGWCC	1 cut(s)	494
BanII	GRGCYC	1 cut(s)	975
BbsI	GAAGAC	1 cut(s)	883
BbvCI	CCTCAGC	1 cut(s)	180
BbvI	GCAGC	9 cut(s)	77, 94, 256, 278, 811, 817, 823, 839, 845
BccI	CCATC	2 cut(s)	80, 118
BciT130I	CCWGG	3 cut(s)	218, 663, 705
BciVI	GTATCC	1 cut(s)	152
BclI	TGATCA	1 cut(s)	168
BcuI	ACTAGT	1 cut(s)	230
BfaI	CTAG	3 cut(s)	138, 231, 782
BfmI	CTRYAG	2 cut(s)	825, 831
BfuI	GTATCC	1 cut(s)	152
BglII	AGATCT	1 cut(s)	501
BisI	GCNGC	9 cut(s)	91, 108, 267, 270, 825, 828, 831, 834, 837
BlpI	GCTNAGC	2 cut(s)	111, 351
BlsI	GCNGC	9 cut(s)	92, 109, 268, 271, 826, 829, 832, 835, 838
Bme1390I	CCNGG	3 cut(s)	218, 663, 705
Bme18I	GGWCC	1 cut(s)	494
BmgT120I	GGNCC	2 cut(s)	494, 665
BmiI	GGNNCC	1 cut(s)	129
BmrFI	CCNGG	3 cut(s)	218, 663, 705
BmsI	GCATC	1 cut(s)	166
BpiI	GAAGAC	1 cut(s)	883
BplI	GAGNNNNNCTC	2 cut(s)	119, 151
BpmI	CTGGAG	5 cut(s)	137, 526, 576, 672, 726
Bpu10I	CCTNAGC	2 cut(s)	180, 273
Bpu1102I	GCTNAGC	2 cut(s)	111, 351
BsaHI	GRCGYC	1 cut(s)	531
BsaJI	CCNNGG	1 cut(s)	703
Bsc4I	CCNNNNNNNGG	3 cut(s)	233, 377, 902
Bse1I	ACTGG	4 cut(s)	247, 496, 559, 629
BseBI	CCWGG	3 cut(s)	218, 663, 705
BseDI	CCNNGG	1 cut(s)	703
BseGI	GGATG	1 cut(s)	699
BseLI	CCNNNNNNNGG	3 cut(s)	233, 377, 902
BseMII	CTCAG	2 cut(s)	171, 342
BseNI	ACTGG	4 cut(s)	247, 496, 559, 629
BseRI	GAGGAG	2 cut(s)	197, 910
BseXI	GCAGC	9 cut(s)	77, 94, 256, 278, 811, 817, 823, 839, 845
BseYI	CCCAGC	2 cut(s)	575, 896
BshFI	GGCC	2 cut(s)	666, 859
BslFI	GGGAC	1 cut(s)	565
BslI	CCNNNNNNNGG	3 cut(s)	233, 377, 902
BsmFI	GGGAC	1 cut(s)	565
BsnI	GGCC	2 cut(s)	666, 859
Bsp1286I	GDGCHC	1 cut(s)	975
Bsp143I	GATC	3 cut(s)	168, 367, 501
Bsp1720I	GCTNAGC	2 cut(s)	111, 351
BspACI	CCGC	2 cut(s)	372, 946
BspANI	GGCC	2 cut(s)	666, 859
BspCNI	CTCAG	2 cut(s)	172, 343
BspLI	GGNNCC	1 cut(s)	129
BspMAI	CTGCAG	2 cut(s)	829, 835
BspPI	GGATC	1 cut(s)	362
BsrI	ACTGG	4 cut(s)	247, 496, 559, 629
BssECI	CCNNGG	1 cut(s)	703
BssMI	GATC	3 cut(s)	168, 367, 501
BssNI	GRCGYC	1 cut(s)	531
Bst2UI	CCWGG	3 cut(s)	218, 663, 705
Bst4CI	ACNGT	2 cut(s)	164, 620
Bst6I	CTCTTC	1 cut(s)	3
BstACI	GRCGYC	1 cut(s)	531
BstAPI	GCANNNNNTGC	1 cut(s)	104
BstC8I	GCNNGC	3 cut(s)	303, 694, 861
BstDEI	CTNAG	4 cut(s)	111, 180, 273, 351
BstF5I	GGATG	1 cut(s)	699
BstKTI	GATC	3 cut(s)	171, 370, 504
BstMBI	GATC	3 cut(s)	168, 367, 501
BstMWI	GCNNNNNNNGC	7 cut(s)	23, 104, 243, 263, 830, 833, 836
BstNI	CCWGG	3 cut(s)	218, 663, 705
BstSCI	CCNGG	3 cut(s)	216, 661, 703
BstSFI	CTRYAG	2 cut(s)	825, 831
BstV1I	GCAGC	9 cut(s)	77, 94, 256, 278, 811, 817, 823, 839, 845
BstV2I	GAAGAC	1 cut(s)	883
BstX2I	RGATCY	2 cut(s)	367, 501
BstXI	CCANNNNNNTGG	1 cut(s)	504
BstYI	RGATCY	2 cut(s)	367, 501
BsuI	GTATCC	1 cut(s)	152
BsuRI	GGCC	2 cut(s)	666, 859
BtsCI	GGATG	1 cut(s)	699
Cac8I	GCNNGC	3 cut(s)	303, 694, 861
CaiI	CAGNNNCTG	2 cut(s)	179, 575
Cfr13I	GGNCC	2 cut(s)	494, 665
CseI	GACGC	2 cut(s)	539, 767
Csp6I	GTAC	3 cut(s)	476, 561, 583
CviAII	CATG	4 cut(s)	77, 298, 382, 961
CviQI	GTAC	3 cut(s)	476, 561, 583
DdeI	CTNAG	4 cut(s)	111, 180, 273, 351
DpnI	GATC	3 cut(s)	170, 369, 503
DpnII	GATC	3 cut(s)	168, 367, 501
Eam1104I	CTCTTC	1 cut(s)	3
EarI	CTCTTC	1 cut(s)	3
Eco24I	GRGCYC	1 cut(s)	975
Eco32I	GATATC	1 cut(s)	813
Eco47I	GGWCC	1 cut(s)	494
Eco57I	CTGAAG	1 cut(s)	428
EcoRII	CCWGG	3 cut(s)	216, 661, 703
EcoRV	GATATC	1 cut(s)	813
EcoT38I	GRGCYC	1 cut(s)	975
FaeI	CATG	4 cut(s)	80, 301, 385, 964
FaqI	GGGAC	1 cut(s)	565
FatI	CATG	4 cut(s)	76, 297, 381, 960
FauI	CCCGC	2 cut(s)	379, 939
FbaI	TGATCA	1 cut(s)	168
FblI	GTMKAC	1 cut(s)	528
Fnu4HI	GCNGC	9 cut(s)	91, 108, 267, 270, 825, 828, 831, 834, 837
FokI	GGATG	1 cut(s)	686
FriOI	GRGCYC	1 cut(s)	975
Fsp4HI	GCNGC	9 cut(s)	91, 108, 267, 270, 825, 828, 831, 834, 837
FspBI	CTAG	3 cut(s)	138, 231, 782
GluI	GCNGC	9 cut(s)	91, 108, 267, 270, 825, 828, 831, 834, 837
GsaI	CCCAGC	2 cut(s)	579, 900
GsuI	CTGGAG	5 cut(s)	137, 526, 576, 672, 726
HaeIII	GGCC	2 cut(s)	666, 859
HgaI	GACGC	2 cut(s)	539, 767
Hin1I	GRCGYC	1 cut(s)	531
Hin1II	CATG	4 cut(s)	80, 301, 385, 964
HincII	GTYRAC	2 cut(s)	529, 721
HindII	GTYRAC	2 cut(s)	529, 721
HinfI	GANTC	3 cut(s)	313, 676, 935
HphI	GGTGA	2 cut(s)	218, 286
Hpy166II	GTNNAC	3 cut(s)	418, 529, 721
Hpy188I	TCNGA	1 cut(s)	399
Hpy188III	TCNNGA	4 cut(s)	317, 505, 602, 651
Hpy8I	GTNNAC	3 cut(s)	418, 529, 721
Hpy99I	CGWCG	1 cut(s)	533
HpyAV	CCTTC	6 cut(s)	7, 181, 379, 394, 784, 788
HpyCH4III	ACNGT	2 cut(s)	164, 620
HpyCH4V	TGCA	5 cut(s)	26, 464, 827, 833, 851
HpyF10VI	GCNNNNNNNGC	7 cut(s)	23, 104, 243, 263, 830, 833, 836
HpyF3I	CTNAG	4 cut(s)	111, 180, 273, 351
Hsp92I	GRCGYC	1 cut(s)	531
Hsp92II	CATG	4 cut(s)	80, 301, 385, 964
Ksp22I	TGATCA	1 cut(s)	168
Kzo9I	GATC	3 cut(s)	168, 367, 501
LmnI	GCTCC	2 cut(s)	127, 347
Lsp1109I	GCAGC	9 cut(s)	77, 94, 256, 278, 811, 817, 823, 839, 845
LweI	GCATC	1 cut(s)	166
MaeI	CTAG	3 cut(s)	138, 231, 782
MaeIII	GTNAC	3 cut(s)	34, 278, 911
MalI	GATC	3 cut(s)	170, 369, 503
MboI	GATC	3 cut(s)	168, 367, 501
MboII	GAAGA	4 cut(s)	20, 326, 767, 883
MfeI	CAATTG	1 cut(s)	762
MflI	RGATCY	2 cut(s)	367, 501
MhlI	GDGCHC	1 cut(s)	975
MluCI	AATT	5 cut(s)	41, 449, 684, 726, 762
MlyI	GAGTC	1 cut(s)	322
MseI	TTAA	2 cut(s)	198, 609
MslI	CAYNNNNRTG	1 cut(s)	884
MspA1I	CMGCKG	3 cut(s)	269, 830, 836
MspR9I	CCNGG	3 cut(s)	218, 663, 705
MunI	CAATTG	1 cut(s)	762
MvaI	CCWGG	3 cut(s)	218, 663, 705
MwoI	GCNNNNNNNGC	7 cut(s)	23, 104, 243, 263, 830, 833, 836
NdeII	GATC	3 cut(s)	168, 367, 501
NlaIII	CATG	4 cut(s)	80, 301, 385, 964
NlaIV	GGNNCC	1 cut(s)	129
PfeI	GAWTC	2 cut(s)	676, 935
PkrI	GCNGC	9 cut(s)	92, 109, 268, 271, 826, 829, 832, 835, 838
PleI	GAGTC	1 cut(s)	321
PpsI	GAGTC	1 cut(s)	321
Psp6I	CCWGG	3 cut(s)	216, 661, 703
PspFI	CCCAGC	2 cut(s)	575, 896
PspGI	CCWGG	3 cut(s)	216, 661, 703
PspN4I	GGNNCC	1 cut(s)	129
PspPI	GGNCC	2 cut(s)	494, 665
PstI	CTGCAG	2 cut(s)	829, 835
PstNI	CAGNNNCTG	2 cut(s)	179, 575
PsuI	RGATCY	2 cut(s)	367, 501
PvuII	CAGCTG	3 cut(s)	269, 830, 836
RsaI	GTAC	3 cut(s)	477, 562, 584
RsaNI	GTAC	3 cut(s)	476, 561, 583
RseI	CAYNNNNRTG	1 cut(s)	884
SalI	GTCGAC	1 cut(s)	527
SaqAI	TTAA	2 cut(s)	198, 609
SatI	GCNGC	9 cut(s)	91, 108, 267, 270, 825, 828, 831, 834, 837
Sau3AI	GATC	3 cut(s)	168, 367, 501
Sau96I	GGNCC	2 cut(s)	494, 665
SchI	GAGTC	1 cut(s)	322
ScrFI	CCNGG	3 cut(s)	218, 663, 705
SduI	GDGCHC	1 cut(s)	975
SfaNI	GCATC	1 cut(s)	166
SfcI	CTRYAG	2 cut(s)	825, 831
SinI	GGWCC	1 cut(s)	494
SmiMI	CAYNNNNRTG	1 cut(s)	884
SpeI	ACTAGT	1 cut(s)	230
Sse9I	AATT	5 cut(s)	41, 449, 684, 726, 762
SsiI	CCGC	2 cut(s)	372, 946
SspMI	CTAG	3 cut(s)	138, 231, 782
StyD4I	CCNGG	3 cut(s)	216, 661, 703
TaaI	ACNGT	2 cut(s)	164, 620
TaqI	TCGA	3 cut(s)	222, 337, 528
TasI	AATT	5 cut(s)	41, 449, 684, 726, 762
TfiI	GAWTC	2 cut(s)	676, 935
Tru1I	TTAA	2 cut(s)	198, 609
Tru9I	TTAA	2 cut(s)	198, 609
TseI	GCWGC	9 cut(s)	90, 107, 266, 269, 824, 827, 830, 833, 836
TspDTI	ATGAA	4 cut(s)	398, 498, 688, 747
VpaK11BI	GGWCC	1 cut(s)	494
XcmI	CCANNNNNNNNNTGG	1 cut(s)	83
XmiI	GTMKAC	1 cut(s)	528
XspI	CTAG	3 cut(s)	138, 231, 782

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.