Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0001773

Physical Location & Seq

Genomic Coordinates Forward (+)

1039418 .. 1043320

Gene Structure 3903 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G014000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 978 bp

ATGGCAGTTGAGAAGGCCGGCATAGCCAAAGATGTTACTGAATTAATTGGAAAAACCCCATTGGTGTATCTAAACCATGTTGTGGACGGTTGTGTTGCTCGTATCGCTGCCAAATTGGAAATGATGGAGCCCTGCTCTAGTGTAAAAGACAGGATTGGCTATAGTATGATTGCAGATGCAGAGGCAAAGGGGCTTATCACACCAGGGCAGAGTGTCCTCATCGAGCCAACAAGTGGTAACACTGGAATAGGGTTAGCCTTCATGGCAGCAGCTAAACGCTACAGGCTTATCATTACAATGCCTGCTTCAATGAGTCTTGAGAGAAGAATCATCCTCCGGGCCTTCGGAGCTGAGTTGGTTCTCACAGATCCTGCGAAGGGCATGAAAGGTGCTGTTCAGAAGGCTGAAGAGATATTGGCCAAGACACCTGATGCCTACATGCTTCAACAGTTTGAAAATCCTGCCAATCCGAAGGTGCATTACGAAACCACTGGACCAGAGATATGGGAAGGTTCAGGCGAGAAAGTAGATGCTTTTGTTTCTGGGATAGGGACAGGTGGAACTATAACAGGTGCAGGGAAATTTCTAAAAGAGAAGAACCCTAGCATAAAGCTGTATGGTGTGGAACCAGTTGAAAGCCCTGTCCTAACTGGAGGAAAGCCTGGTCCACACAAGATCCAAGGAATAGGAGCTGGTTTTATCCCGGGTGTTTTGGAAGTCAACATCATTGATGAAGTTGTTCAAATATCAAGTGATGAAGCAATTGAAACTGCAAAGCTTCTTGCACATAAAGAAGGTTTGCTTGTTGGAATATCATCCGGAGCTGCTGCCGCTGCTGCAATCAGGATTGCAAAGAGACCAGAGAATGCTGGAAAGCTCATTGTTGTGATTTTTCCAAGCTTTGGGGAGAGGTATCTGTCCTCTGTACTGTTTGAGTCGGTGAGACGGGAAGCTGAAAGCATGACTTTCGAGCCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000096 GO:0000097 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0003824 GO:0004124 GO:0005488 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005773 GO:0005774 GO:0005777 GO:0005829 GO:0005886 GO:0006082 GO:0006520 GO:0006534 GO:0006535 GO:0006563 GO:0006790 GO:0006807 GO:0007568 GO:0008144 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009069 GO:0009070 GO:0009507 GO:0009532 GO:0009536 GO:0009566 GO:0009567 GO:0009570 GO:0009653 GO:0009826 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0010035 GO:0010038 GO:0010043 GO:0016020 GO:0016043 GO:0016049 GO:0016053 GO:0016740 GO:0016765 GO:0019344 GO:0019752 GO:0019842 GO:0019953 GO:0022414 GO:0030154 GO:0030170 GO:0031090 GO:0032501 GO:0032502 GO:0032989 GO:0036094 GO:0040007 GO:0042221 GO:0042579 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044272 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0044703 GO:0044706 GO:0046394 GO:0046686 GO:0048037 GO:0048046 GO:0048468 GO:0048588 GO:0048589 GO:0048856 GO:0048868 GO:0048869 GO:0050662 GO:0050896 GO:0051704 GO:0060560 GO:0070279 GO:0071704 GO:0071840 GO:0071944 GO:0097159 GO:0098588 GO:0098805 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00270 ko00920 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 map00270 map00920 map01100 map01110 map01120 map01130 map01200 map01230

Pfam Domains

Protein Families

PALP

Protein Analysis

326

Amino Acids

34.42

Weight (kDa)

5.95

Isoelectric Point (pI)

34.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001773)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22460 AT4G14880 AT4G14880 AT4G14880 AT4G14880 AT4G14880
fragaria_vesca	FvH4_4g15640 FvH4_4g15640 FvH4_4g15640 FvH4_4g15640 FvH4_4g15640 FvH4_4g15640 FvH4_4g15640 FvH4_6g03700 FvH4_6g03700 FvH4_6g03700 FvH4_6g03700 FvH4_6g03700
malus_domestica	MD04G1219000.v1.1 MD12G1236000.v1.1 MD13G1193400.v1.1 MD16G1194200.v1.1
prunus_persica	Prupe.1G014000_v2.0.a1 Prupe.6G338400_v2.0.a1 Prupe.6G338400_v2.0.a1
pyrus_communis	pycom04g19440 pycom12g21720 pycom13g16570
rosa_chinensis	RchiOBHm_Chr3g0452241 RchiOBHm_Chr4g0416171
rosa_laevigata	RLG00000008009 RLG00000025614
rosa_multiflora	Rmu_sc0001145.1_g000001 Rmu_sc0010928.1_g000004 Rmu_sc0031164.1_g000006 Rmu_sc0042623.1_g000001
rosa_roxburghii	Rroxscaffold_5G00360030 Rroxscaffold_6G00429370
rosa_rugosa	Rorug02G0639500 Rorug02G0639600 Rorug04G0139300 Rorug04G0139400 Rorug04G0139500
rosa_samantha	Rh3DG042600 Rh4BG199000
rosa_wichuraiana	Rw3G003170 Rw4G017040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	3 cut(s)	82, 233, 902
AccIII	TCCGGA	1 cut(s)	818
AciI	CCGC	1 cut(s)	831
AclWI	GGATC	2 cut(s)	362, 670
AcoI	YGGCCR	1 cut(s)	417
AcsI	RAATTY	1 cut(s)	581
AcuI	CTGAAG	1 cut(s)	426
AfaI	GTAC	1 cut(s)	927
AfiI	CCNNNNNNNGG	4 cut(s)	82, 233, 377, 902
AgsI	TTSAA	6 cut(s)	309, 446, 455, 635, 743, 767
AjnI	CCWGG	2 cut(s)	202, 661
AluBI	AGCT	9 cut(s)	272, 350, 613, 692, 778, 824, 877, 900, 953
AluI	AGCT	9 cut(s)	272, 350, 613, 692, 778, 824, 877, 900, 953
Alw26I	GTCTC	2 cut(s)	850, 937
AlwI	GGATC	2 cut(s)	362, 670
AlwNI	CAGNNNCTG	1 cut(s)	371
Ama87I	CYCGRG	1 cut(s)	703
Aor13HI	TCCGGA	1 cut(s)	818
AoxI	GGCC	3 cut(s)	15, 339, 417
ApeKI	GCWGC	7 cut(s)	107, 266, 269, 824, 827, 833, 836
ApoI	RAATTY	1 cut(s)	581
AseI	ATTAAT	1 cut(s)	44
Asp700I	GAANNNNTTC	1 cut(s)	738
AspS9I	GGNCC	3 cut(s)	339, 494, 665
AsuC2I	CCSGG	3 cut(s)	338, 704, 705
AsuHPI	GGTGA	1 cut(s)	952
AvaI	CYCGRG	1 cut(s)	703
AvaII	GGWCC	2 cut(s)	494, 665
BalI	TGGCCA	1 cut(s)	419
BanII	GRGCYC	2 cut(s)	132, 975
BarI	GAAGNNNNNNTAC	2 cut(s)	464, 496
BbvI	GCAGC	7 cut(s)	94, 278, 281, 811, 814, 820, 823
BccI	CCATC	1 cut(s)	118
BcgI	CGANNNNNNTGC	1 cut(s)	949
BciT130I	CCWGG	2 cut(s)	204, 663
BcnI	CCSGG	3 cut(s)	338, 704, 705
BcoDI	GTCTC	2 cut(s)	850, 937
BfaI	CTAG	2 cut(s)	138, 603
BfmI	CTRYAG	2 cut(s)	160, 280
BglI	GCCNNNNNGGC	1 cut(s)	263
BisI	GCNGC	8 cut(s)	108, 267, 270, 825, 828, 831, 834, 837
BlsI	GCNGC	8 cut(s)	109, 268, 271, 826, 829, 832, 835, 838
Bme1390I	CCNGG	5 cut(s)	204, 338, 663, 704, 705
Bme18I	GGWCC	2 cut(s)	494, 665
BmeT110I	CYCGRG	1 cut(s)	703
BmgT120I	GGNCC	3 cut(s)	339, 494, 665
BmiI	GGNNCC	2 cut(s)	129, 627
BmrFI	CCNGG	5 cut(s)	204, 338, 663, 704, 705
BmsI	GCATC	3 cut(s)	166, 421, 520
BplI	GAGNNNNNCTC	2 cut(s)	119, 151
BpmI	CTGGAG	1 cut(s)	672
BpuEI	CTTGAG	1 cut(s)	338
BpuMI	CCSGG	3 cut(s)	338, 704, 705
BsaI	GGTCTC	1 cut(s)	850
BsaJI	CCNNGG	3 cut(s)	203, 679, 703
BsaWI	WCCGGW	1 cut(s)	818
Bsc4I	CCNNNNNNNGG	4 cut(s)	82, 233, 377, 902
Bse118I	RCCGGY	1 cut(s)	17
Bse1I	ACTGG	4 cut(s)	247, 496, 629, 655
BseAI	TCCGGA	1 cut(s)	818
BseBI	CCWGG	2 cut(s)	204, 663
BseDI	CCNNGG	3 cut(s)	203, 679, 703
BseGI	GGATG	2 cut(s)	330, 815
BseLI	CCNNNNNNNGG	4 cut(s)	82, 233, 377, 902
BseMII	CTCAG	1 cut(s)	342
BseNI	ACTGG	4 cut(s)	247, 496, 629, 655
BseXI	GCAGC	7 cut(s)	94, 278, 281, 811, 814, 820, 823
BsgI	GTGCAG	1 cut(s)	594
BshFI	GGCC	3 cut(s)	17, 341, 419
BsiHKCI	CYCGRG	1 cut(s)	703
BsiSI	CCGG	4 cut(s)	18, 337, 704, 819
BslFI	GGGAC	1 cut(s)	565
BslI	CCNNNNNNNGG	4 cut(s)	82, 233, 377, 902
BsmAI	GTCTC	2 cut(s)	850, 937
BsmBI	CGTCTC	1 cut(s)	937
BsmFI	GGGAC	1 cut(s)	565
BsmI	GAATGC	1 cut(s)	871
BsnI	GGCC	3 cut(s)	17, 341, 419
Bso31I	GGTCTC	1 cut(s)	850
BsoBI	CYCGRG	1 cut(s)	703
Bsp1286I	GDGCHC	2 cut(s)	132, 975
Bsp13I	TCCGGA	1 cut(s)	818
Bsp143I	GATC	2 cut(s)	367, 675
BspACI	CCGC	1 cut(s)	831
BspANI	GGCC	3 cut(s)	17, 341, 419
BspCNI	CTCAG	1 cut(s)	343
BspEI	TCCGGA	1 cut(s)	818
BspLI	GGNNCC	2 cut(s)	129, 627
BspPI	GGATC	2 cut(s)	362, 670
BspTNI	GGTCTC	1 cut(s)	850
BsrFI	RCCGGY	1 cut(s)	17
BsrI	ACTGG	4 cut(s)	247, 496, 629, 655
BssAI	RCCGGY	1 cut(s)	17
BssECI	CCNNGG	3 cut(s)	203, 679, 703
BssMI	GATC	2 cut(s)	367, 675
BssT1I	CCWWGG	1 cut(s)	679
Bst2UI	CCWGG	2 cut(s)	204, 663
Bst4CI	ACNGT	3 cut(s)	89, 450, 930
Bst6I	CTCTTC	1 cut(s)	402
BstC8I	GCNNGC	2 cut(s)	19, 303
BstDEI	CTNAG	1 cut(s)	351
BstF5I	GGATG	2 cut(s)	330, 815
BstKTI	GATC	2 cut(s)	370, 678
BstMAI	GTCTC	2 cut(s)	850, 937
BstMBI	GATC	2 cut(s)	367, 675
BstMWI	GCNNNNNNNGC	7 cut(s)	23, 104, 263, 347, 830, 833, 836
BstNI	CCWGG	2 cut(s)	204, 663
BstNSI	RCATGY	1 cut(s)	442
BstSCI	CCNGG	5 cut(s)	202, 336, 661, 702, 703
BstSFI	CTRYAG	2 cut(s)	160, 280
BstV1I	GCAGC	7 cut(s)	94, 278, 281, 811, 814, 820, 823
BstX2I	RGATCY	2 cut(s)	367, 675
BstXI	CCANNNNNNTGG	1 cut(s)	504
BstYI	RGATCY	2 cut(s)	367, 675
BsuRI	GGCC	3 cut(s)	17, 341, 419
BtsCI	GGATG	2 cut(s)	330, 815
BtsIMutI	CAGTG	2 cut(s)	240, 489
Cac8I	GCNNGC	2 cut(s)	19, 303
CaiI	CAGNNNCTG	1 cut(s)	371
Cfr10I	RCCGGY	1 cut(s)	17
Cfr13I	GGNCC	3 cut(s)	339, 494, 665
Cfr9I	CCCGGG	1 cut(s)	703
Csp6I	GTAC	1 cut(s)	926
CviAII	CATG	5 cut(s)	77, 262, 382, 439, 961
CviQI	GTAC	1 cut(s)	926
DdeI	CTNAG	1 cut(s)	351
DpnI	GATC	2 cut(s)	369, 677
DpnII	GATC	2 cut(s)	367, 675
EaeI	YGGCCR	1 cut(s)	417
Eam1104I	CTCTTC	1 cut(s)	402
EarI	CTCTTC	1 cut(s)	402
Eco130I	CCWWGG	1 cut(s)	679
Eco24I	GRGCYC	2 cut(s)	132, 975
Eco31I	GGTCTC	1 cut(s)	850
Eco47I	GGWCC	2 cut(s)	494, 665
Eco57I	CTGAAG	1 cut(s)	426
Eco88I	CYCGRG	1 cut(s)	703
EcoRII	CCWGG	2 cut(s)	202, 661
EcoT14I	CCWWGG	1 cut(s)	679
EcoT38I	GRGCYC	2 cut(s)	132, 975
ErhI	CCWWGG	1 cut(s)	679
Esp3I	CGTCTC	1 cut(s)	937
FaeI	CATG	5 cut(s)	80, 265, 385, 442, 964
FalI	AAGNNNNNCTT	3 cut(s)	786, 818, 949
FaqI	GGGAC	1 cut(s)	565
FatI	CATG	5 cut(s)	76, 261, 381, 438, 960
Fnu4HI	GCNGC	8 cut(s)	108, 267, 270, 825, 828, 831, 834, 837
FokI	GGATG	2 cut(s)	317, 802
FriOI	GRGCYC	2 cut(s)	132, 975
Fsp4HI	GCNGC	8 cut(s)	108, 267, 270, 825, 828, 831, 834, 837
FspBI	CTAG	2 cut(s)	138, 603
GluI	GCNGC	8 cut(s)	108, 267, 270, 825, 828, 831, 834, 837
GsuI	CTGGAG	1 cut(s)	672
HaeIII	GGCC	3 cut(s)	17, 341, 419
HapII	CCGG	4 cut(s)	18, 337, 704, 819
Hin1II	CATG	5 cut(s)	80, 265, 385, 442, 964
HincII	GTYRAC	1 cut(s)	721
HindII	GTYRAC	1 cut(s)	721
HindIII	AAGCTT	2 cut(s)	776, 898
HinfI	GANTC	3 cut(s)	313, 327, 935
HpaII	CCGG	4 cut(s)	18, 337, 704, 819
HphI	GGTGA	1 cut(s)	952
Hpy166II	GTNNAC	3 cut(s)	85, 668, 721
Hpy188I	TCNGA	3 cut(s)	347, 399, 471
Hpy188III	TCNNGA	3 cut(s)	317, 819, 844
Hpy8I	GTNNAC	3 cut(s)	85, 668, 721
HpyAV	CCTTC	8 cut(s)	7, 268, 352, 370, 394, 466, 503, 788
HpyCH4III	ACNGT	3 cut(s)	89, 450, 930
HpyCH4V	TGCA	8 cut(s)	173, 179, 478, 575, 773, 785, 839, 851
HpyF10VI	GCNNNNNNNGC	7 cut(s)	23, 104, 263, 347, 830, 833, 836
HpyF3I	CTNAG	1 cut(s)	351
Hsp92II	CATG	5 cut(s)	80, 265, 385, 442, 964
Kpn2I	TCCGGA	1 cut(s)	818
KroI	GCCGGC	1 cut(s)	17
KroNI	GCCGGC	1 cut(s)	19
Kzo9I	GATC	2 cut(s)	367, 675
LmnI	GCTCC	4 cut(s)	127, 347, 689, 821
Lsp1109I	GCAGC	7 cut(s)	94, 278, 281, 811, 814, 820, 823
LweI	GCATC	3 cut(s)	166, 421, 520
MaeI	CTAG	2 cut(s)	138, 603
MaeIII	GTNAC	2 cut(s)	34, 236
MalI	GATC	2 cut(s)	369, 677
MboI	GATC	2 cut(s)	367, 675
MboII	GAAGA	3 cut(s)	336, 419, 607
MfeI	CAATTG	1 cut(s)	762
MflI	RGATCY	2 cut(s)	367, 675
MhlI	GDGCHC	2 cut(s)	132, 975
MlsI	TGGCCA	1 cut(s)	419
MluCI	AATT	5 cut(s)	41, 45, 113, 581, 762
MluNI	TGGCCA	1 cut(s)	419
MlyI	GAGTC	2 cut(s)	322, 944
MmeI	TCCRAC	1 cut(s)	787
MnlI	CCTC	6 cut(s)	175, 227, 344, 647, 903, 931
Mox20I	TGGCCA	1 cut(s)	419
MroI	TCCGGA	1 cut(s)	818
MroNI	GCCGGC	1 cut(s)	17
MroXI	GAANNNNTTC	1 cut(s)	738
MscI	TGGCCA	1 cut(s)	419
MseI	TTAA	1 cut(s)	44
MslI	CAYNNNNRTG	2 cut(s)	296, 884
Msp20I	TGGCCA	1 cut(s)	419
MspA1I	CMGCKG	1 cut(s)	833
MspI	CCGG	4 cut(s)	18, 337, 704, 819
MspR9I	CCNGG	5 cut(s)	204, 338, 663, 704, 705
MunI	CAATTG	1 cut(s)	762
Mva1269I	GAATGC	1 cut(s)	871
MvaI	CCWGG	2 cut(s)	204, 663
MwoI	GCNNNNNNNGC	7 cut(s)	23, 104, 263, 347, 830, 833, 836
NaeI	GCCGGC	1 cut(s)	19
NciI	CCSGG	3 cut(s)	338, 704, 705
NdeII	GATC	2 cut(s)	367, 675
NgoMIV	GCCGGC	1 cut(s)	17
NlaIII	CATG	5 cut(s)	80, 265, 385, 442, 964
NlaIV	GGNNCC	2 cut(s)	129, 627
NspI	RCATGY	1 cut(s)	442
PctI	GAATGC	1 cut(s)	871
PdiI	GCCGGC	1 cut(s)	19
PdmI	GAANNNNTTC	1 cut(s)	738
PfeI	GAWTC	1 cut(s)	327
PflMI	CCANNNNNTGG	3 cut(s)	82, 233, 902
PkrI	GCNGC	8 cut(s)	109, 268, 271, 826, 829, 832, 835, 838
PleI	GAGTC	2 cut(s)	321, 943
PpsI	GAGTC	2 cut(s)	321, 943
PshBI	ATTAAT	1 cut(s)	44
Psp6I	CCWGG	2 cut(s)	202, 661
PspGI	CCWGG	2 cut(s)	202, 661
PspN4I	GGNNCC	2 cut(s)	129, 627
PspPI	GGNCC	3 cut(s)	339, 494, 665
PstNI	CAGNNNCTG	1 cut(s)	371
PsuI	RGATCY	2 cut(s)	367, 675
RsaI	GTAC	1 cut(s)	927
RsaNI	GTAC	1 cut(s)	926
RseI	CAYNNNNRTG	2 cut(s)	296, 884
SaqAI	TTAA	1 cut(s)	44
SatI	GCNGC	8 cut(s)	108, 267, 270, 825, 828, 831, 834, 837
Sau3AI	GATC	2 cut(s)	367, 675
Sau96I	GGNCC	3 cut(s)	339, 494, 665
SchI	GAGTC	2 cut(s)	322, 944
ScrFI	CCNGG	5 cut(s)	204, 338, 663, 704, 705
SduI	GDGCHC	2 cut(s)	132, 975
SfaNI	GCATC	3 cut(s)	166, 421, 520
SfcI	CTRYAG	2 cut(s)	160, 280
SinI	GGWCC	2 cut(s)	494, 665
SmaI	CCCGGG	1 cut(s)	705
SmiMI	CAYNNNNRTG	2 cut(s)	296, 884
SmlI	CTYRAG	1 cut(s)	317
SmoI	CTYRAG	1 cut(s)	317
Sse9I	AATT	5 cut(s)	41, 45, 113, 581, 762
SsiI	CCGC	1 cut(s)	831
SspMI	CTAG	2 cut(s)	138, 603
StyD4I	CCNGG	5 cut(s)	202, 336, 661, 702, 703
StyI	CCWWGG	1 cut(s)	679
TaaI	ACNGT	3 cut(s)	89, 450, 930
TaqI	TCGA	2 cut(s)	222, 969
TasI	AATT	5 cut(s)	41, 45, 113, 581, 762
TatI	WGTACW	1 cut(s)	925
TauI	GCSGC	1 cut(s)	833
TfiI	GAWTC	1 cut(s)	327
Tru1I	TTAA	1 cut(s)	44
Tru9I	TTAA	1 cut(s)	44
TscAI	CASTG	2 cut(s)	247, 496
TseI	GCWGC	7 cut(s)	107, 266, 269, 824, 827, 833, 836
TspDTI	ATGAA	4 cut(s)	250, 398, 747, 771
TspMI	CCCGGG	1 cut(s)	703
TspRI	CASTG	2 cut(s)	247, 496
Van91I	CCANNNNNTGG	3 cut(s)	82, 233, 902
VpaK11BI	GGWCC	2 cut(s)	494, 665
VspI	ATTAAT	1 cut(s)	44
XapI	RAATTY	1 cut(s)	581
XceI	RCATGY	1 cut(s)	442
XmaI	CCCGGG	1 cut(s)	703
XmnI	GAANNNNTTC	1 cut(s)	738
XspI	CTAG	2 cut(s)	138, 603

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.