FvH4_6g03700

Belongs to the cysteine synthase cystathionine beta- synthase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0001773
Physical Location & Seq
Reverse (-)
2011541 .. 2017051
5511 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g03700.t5

Sequence Viewer

Length: 978 bp
ATGGTGGAGGAGAAGGCCTGGATTGCGAAAGATGTTACTGAATTGATTGGAAACACGCCATTGGTGTATCTCAACCATGTCGTAGATGGCTGTGTCGCAAGGGTCGCTGCTAAGCTGGAGATGATGGAGCCTTGCTCTAGCGTCAAGGATAGGATTGGATATAGTATGATCACAGATGCTGAGGAGAAGGGTCTCATTAAGGCTGGTGAGAGTGTCCTGGTTGAGCCTACAAGTGGGAATACTGGCATTGGGTTGGCTTTTATGGCAGCTGCAAAGGGTTACAAACTAATAATCACCATGCCTGCTTCCATGAGTCTTGAAAGACGAACCATTCTTCGAGGTTTTGGAGCTGAGCTTGTTCTCACGGATCCTGCCAAAGGCATGAAAGGGGCTGTTCAGAAGGCACAGGAGATAGTGGATAAGACACCCAATGCTTATATGCTTCAGCAATTTGAGAACCCTGCAAACCCTAAGGTACATTATGAAACTACTGGACCAGAGATCTGGAGAGGCTCTGCTGGCAAAGTCGATGCTTTTGTTTCTGGGATAGGGACCGGAGGTACAATTACAGGTGCTGGGAAGTACCTCAAAGAGCAGAATCCTGATATTAAGCTCTACGGTGTAGAACCAGTTGAAAGTGCTGTTTTGTCCGGAGGGAGACCTGGCCCTCACAAGATTCAAGGGATTGGTGCTGGCTTCATCCCTGGAGTTTTGGATGTCAGCTTAATTGATGAAGTTATCCAAATATCAAGTGAAGAATCTATTGAAACAGCTAAGCGTCTTGCATTGAAGGAAGGTTTGTTGGTGGGGATATCATCTGGTGCCGCAGCTGCAGCTGCAATTGAGATTGCAAGGAGGCCAGCAAATGCTGGAAAGCTCATTGTTGCGGTCTTCCCCAGCTTTGGAGAGCGTTACCTGTCCTCTGTGTTGTTCGAATCTGTAAAGCGGGAGGCAGAGAACATGGTTTTTGAGCCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00270 ko00920 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 map00270 map00920 map01100 map01110 map01120 map01130 map01200 map01230
Pfam Domains
Protein Families
PALP

Protein Analysis

326

Amino Acids

34.45

Weight (kDa)

5.49

Isoelectric Point (pI)

31.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PALP PF00291 12 - 299 1.1e-73 Pyridoxal-phosphate dependent enzyme
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 821
AccIII TCCGGA 1 cut(s) 650
AciI CCGC 3 cut(s) 825, 887, 946
AclWI GGATC 2 cut(s) 362, 375
AcuI CTGAAG 1 cut(s) 428
AfaI GTAC 3 cut(s) 477, 562, 584
AfiI CCNNNNNNNGG 3 cut(s) 233, 377, 902
AgsI TTSAA 5 cut(s) 320, 635, 680, 767, 790
AjnI CCWGG 4 cut(s) 17, 216, 661, 703
Alw26I GTCTC 2 cut(s) 197, 652
AlwI GGATC 2 cut(s) 362, 375
AlwNI CAGNNNCTG 2 cut(s) 179, 575
Aor13HI TCCGGA 1 cut(s) 650
AoxI GGCC 3 cut(s) 15, 664, 857
ApeKI GCWGC 7 cut(s) 107, 266, 269, 827, 830, 833, 836
AspS9I GGNCC 3 cut(s) 494, 552, 665
AsuHPI GGTGA 2 cut(s) 218, 286
AsuII TTCGAA 1 cut(s) 933
AvaII GGWCC 2 cut(s) 494, 552
AxyI CCTNAGG 1 cut(s) 471
BamHI GGATCC 1 cut(s) 367
BanI GGYRCC 1 cut(s) 821
BanII GRGCYC 1 cut(s) 975
BbsI GAAGAC 1 cut(s) 883
BbvCI CCTCAGC 1 cut(s) 180
BbvI GCAGC 7 cut(s) 94, 256, 278, 817, 823, 839, 845
BccI CCATC 2 cut(s) 80, 118
BciT130I CCWGG 4 cut(s) 19, 218, 663, 705
BclI TGATCA 1 cut(s) 168
BcoDI GTCTC 2 cut(s) 197, 652
BfaI CTAG 1 cut(s) 138
BfmI CTRYAG 1 cut(s) 831
BglII AGATCT 1 cut(s) 501
BisI GCNGC 8 cut(s) 108, 267, 270, 825, 828, 831, 834, 837
BlpI GCTNAGC 3 cut(s) 111, 351, 774
BlsI GCNGC 8 cut(s) 109, 268, 271, 826, 829, 832, 835, 838
Bme1390I CCNGG 4 cut(s) 19, 218, 663, 705
Bme18I GGWCC 2 cut(s) 494, 552
BmgT120I GGNCC 3 cut(s) 494, 552, 665
BmiI GGNNCC 4 cut(s) 129, 369, 553, 823
BmrFI CCNGG 4 cut(s) 19, 218, 663, 705
BmsI GCATC 2 cut(s) 166, 520
BpiI GAAGAC 1 cut(s) 883
BplI GAGNNNNNCTC 2 cut(s) 119, 151
BpmI CTGGAG 3 cut(s) 137, 526, 726
Bpu10I CCTNAGC 1 cut(s) 180
Bpu1102I GCTNAGC 3 cut(s) 111, 351, 774
Bpu14I TTCGAA 1 cut(s) 933
BsaI GGTCTC 2 cut(s) 197, 652
BsaJI CCNNGG 1 cut(s) 703
BsaWI WCCGGW 2 cut(s) 554, 650
Bsc4I CCNNNNNNNGG 3 cut(s) 233, 377, 902
Bse1I ACTGG 3 cut(s) 247, 496, 629
Bse21I CCTNAGG 1 cut(s) 471
BseAI TCCGGA 1 cut(s) 650
BseBI CCWGG 4 cut(s) 19, 218, 663, 705
BseDI CCNNGG 1 cut(s) 703
BseGI GGATG 2 cut(s) 699, 721
BseLI CCNNNNNNNGG 3 cut(s) 233, 377, 902
BseMII CTCAG 2 cut(s) 171, 342
BseNI ACTGG 3 cut(s) 247, 496, 629
BseRI GAGGAG 2 cut(s) 23, 197
BseXI GCAGC 7 cut(s) 94, 256, 278, 817, 823, 839, 845
BseYI CCCAGC 2 cut(s) 575, 896
BshFI GGCC 3 cut(s) 17, 666, 859
BshNI GGYRCC 1 cut(s) 821
BsiSI CCGG 2 cut(s) 555, 651
BslFI GGGAC 1 cut(s) 565
BslI CCNNNNNNNGG 3 cut(s) 233, 377, 902
BsmAI GTCTC 2 cut(s) 197, 652
BsmFI GGGAC 1 cut(s) 565
BsnI GGCC 3 cut(s) 17, 666, 859
Bso31I GGTCTC 2 cut(s) 197, 652
Bsp119I TTCGAA 1 cut(s) 933
Bsp1286I GDGCHC 1 cut(s) 975
Bsp13I TCCGGA 1 cut(s) 650
Bsp143I GATC 3 cut(s) 168, 367, 501
Bsp1720I GCTNAGC 3 cut(s) 111, 351, 774
BspACI CCGC 3 cut(s) 825, 887, 946
BspANI GGCC 3 cut(s) 17, 666, 859
BspCNI CTCAG 2 cut(s) 172, 343
BspEI TCCGGA 1 cut(s) 650
BspLI GGNNCC 4 cut(s) 129, 369, 553, 823
BspMAI CTGCAG 1 cut(s) 835
BspPI GGATC 2 cut(s) 362, 375
BspT104I TTCGAA 1 cut(s) 933
BspT107I GGYRCC 1 cut(s) 821
BspTNI GGTCTC 2 cut(s) 197, 652
BsrI ACTGG 3 cut(s) 247, 496, 629
BssECI CCNNGG 1 cut(s) 703
BssMI GATC 3 cut(s) 168, 367, 501
Bst2UI CCWGG 4 cut(s) 19, 218, 663, 705
Bst4CI ACNGT 1 cut(s) 620
BstBI TTCGAA 1 cut(s) 933
BstC8I GCNNGC 4 cut(s) 303, 520, 694, 861
BstDEI CTNAG 5 cut(s) 111, 180, 351, 471, 774
BstENI CCTNNNNNAGG 1 cut(s) 375
BstF5I GGATG 2 cut(s) 699, 721
BstKTI GATC 3 cut(s) 171, 370, 504
BstMAI GTCTC 2 cut(s) 197, 652
BstMBI GATC 3 cut(s) 168, 367, 501
BstMWI GCNNNNNNNGC 7 cut(s) 23, 104, 263, 519, 830, 833, 836
BstNI CCWGG 4 cut(s) 19, 218, 663, 705
BstSCI CCNGG 4 cut(s) 17, 216, 661, 703
BstSFI CTRYAG 1 cut(s) 831
BstV1I GCAGC 7 cut(s) 94, 256, 278, 817, 823, 839, 845
BstV2I GAAGAC 1 cut(s) 883
BstX2I RGATCY 2 cut(s) 367, 501
BstXI CCANNNNNNTGG 1 cut(s) 504
BstYI RGATCY 2 cut(s) 367, 501
Bsu36I CCTNAGG 1 cut(s) 471
BsuRI GGCC 3 cut(s) 17, 666, 859
BtsCI GGATG 2 cut(s) 699, 721
Cac8I GCNNGC 4 cut(s) 303, 520, 694, 861
CaiI CAGNNNCTG 2 cut(s) 179, 575
Cfr13I GGNCC 3 cut(s) 494, 552, 665
CseI GACGC 2 cut(s) 130, 767
Csp6I GTAC 3 cut(s) 476, 561, 583
CviAII CATG 5 cut(s) 77, 298, 310, 382, 961
CviQI GTAC 3 cut(s) 476, 561, 583
DdeI CTNAG 5 cut(s) 111, 180, 351, 471, 774
DpnI GATC 3 cut(s) 170, 369, 503
DpnII GATC 3 cut(s) 168, 367, 501
Eco147I AGGCCT 1 cut(s) 17
Eco24I GRGCYC 1 cut(s) 975
Eco31I GGTCTC 2 cut(s) 197, 652
Eco32I GATATC 1 cut(s) 813
Eco47I GGWCC 2 cut(s) 494, 552
Eco57I CTGAAG 1 cut(s) 428
Eco81I CCTNAGG 1 cut(s) 471
EcoNI CCTNNNNNAGG 1 cut(s) 375
EcoRII CCWGG 4 cut(s) 17, 216, 661, 703
EcoRV GATATC 1 cut(s) 813
EcoT38I GRGCYC 1 cut(s) 975
FaeI CATG 5 cut(s) 80, 301, 313, 385, 964
FaqI GGGAC 1 cut(s) 565
FatI CATG 5 cut(s) 76, 297, 309, 381, 960
FauI CCCGC 1 cut(s) 939
FbaI TGATCA 1 cut(s) 168
Fnu4HI GCNGC 8 cut(s) 108, 267, 270, 825, 828, 831, 834, 837
FokI GGATG 2 cut(s) 686, 728
FriOI GRGCYC 1 cut(s) 975
Fsp4HI GCNGC 8 cut(s) 108, 267, 270, 825, 828, 831, 834, 837
FspBI CTAG 1 cut(s) 138
GluI GCNGC 8 cut(s) 108, 267, 270, 825, 828, 831, 834, 837
GsaI CCCAGC 2 cut(s) 579, 900
GsuI CTGGAG 3 cut(s) 137, 526, 726
HaeIII GGCC 3 cut(s) 17, 666, 859
HapII CCGG 2 cut(s) 555, 651
HgaI GACGC 2 cut(s) 130, 767
Hin1II CATG 5 cut(s) 80, 301, 313, 385, 964
HinfI GANTC 5 cut(s) 313, 598, 676, 758, 935
HpaII CCGG 2 cut(s) 555, 651
HphI GGTGA 2 cut(s) 218, 286
Hpy188I TCNGA 1 cut(s) 399
Hpy188III TCNNGA 4 cut(s) 317, 505, 602, 651
HpyAV CCTTC 5 cut(s) 7, 181, 394, 784, 788
HpyCH4III ACNGT 1 cut(s) 620
HpyCH4V TGCA 6 cut(s) 272, 464, 785, 833, 839, 851
HpyF10VI GCNNNNNNNGC 7 cut(s) 23, 104, 263, 519, 830, 833, 836
HpyF3I CTNAG 5 cut(s) 111, 180, 351, 471, 774
Hsp92II CATG 5 cut(s) 80, 301, 313, 385, 964
Kpn2I TCCGGA 1 cut(s) 650
Ksp22I TGATCA 1 cut(s) 168
Kzo9I GATC 3 cut(s) 168, 367, 501
LmnI GCTCC 2 cut(s) 127, 347
Lsp1109I GCAGC 7 cut(s) 94, 256, 278, 817, 823, 839, 845
LweI GCATC 2 cut(s) 166, 520
MaeI CTAG 1 cut(s) 138
MaeIII GTNAC 3 cut(s) 34, 278, 911
MalI GATC 3 cut(s) 170, 369, 503
MboI GATC 3 cut(s) 168, 367, 501
MboII GAAGA 3 cut(s) 326, 767, 883
MfeI CAATTG 1 cut(s) 840
MflI RGATCY 2 cut(s) 367, 501
MhlI GDGCHC 1 cut(s) 975
MluCI AATT 5 cut(s) 41, 449, 564, 726, 840
MlyI GAGTC 1 cut(s) 322
MroI TCCGGA 1 cut(s) 650
MseI TTAA 3 cut(s) 198, 609, 725
MspA1I CMGCKG 3 cut(s) 269, 830, 836
MspI CCGG 2 cut(s) 555, 651
MspR9I CCNGG 4 cut(s) 19, 218, 663, 705
MunI CAATTG 1 cut(s) 840
MvaI CCWGG 4 cut(s) 19, 218, 663, 705
MwoI GCNNNNNNNGC 7 cut(s) 23, 104, 263, 519, 830, 833, 836
NdeII GATC 3 cut(s) 168, 367, 501
NlaIII CATG 5 cut(s) 80, 301, 313, 385, 964
NlaIV GGNNCC 4 cut(s) 129, 369, 553, 823
NspV TTCGAA 1 cut(s) 933
PceI AGGCCT 1 cut(s) 17
PfeI GAWTC 4 cut(s) 598, 676, 758, 935
PkrI GCNGC 8 cut(s) 109, 268, 271, 826, 829, 832, 835, 838
PleI GAGTC 1 cut(s) 321
PpsI GAGTC 1 cut(s) 321
Psp6I CCWGG 4 cut(s) 17, 216, 661, 703
PspFI CCCAGC 2 cut(s) 575, 896
PspGI CCWGG 4 cut(s) 17, 216, 661, 703
PspN4I GGNNCC 4 cut(s) 129, 369, 553, 823
PspPI GGNCC 3 cut(s) 494, 552, 665
PstI CTGCAG 1 cut(s) 835
PstNI CAGNNNCTG 2 cut(s) 179, 575
PsuI RGATCY 2 cut(s) 367, 501
PvuII CAGCTG 3 cut(s) 269, 830, 836
RsaI GTAC 3 cut(s) 477, 562, 584
RsaNI GTAC 3 cut(s) 476, 561, 583
SaqAI TTAA 3 cut(s) 198, 609, 725
SatI GCNGC 8 cut(s) 108, 267, 270, 825, 828, 831, 834, 837
Sau3AI GATC 3 cut(s) 168, 367, 501
Sau96I GGNCC 3 cut(s) 494, 552, 665
SchI GAGTC 1 cut(s) 322
ScrFI CCNGG 4 cut(s) 19, 218, 663, 705
SduI GDGCHC 1 cut(s) 975
SfaNI GCATC 2 cut(s) 166, 520
SfcI CTRYAG 1 cut(s) 831
SfuI TTCGAA 1 cut(s) 933
SinI GGWCC 2 cut(s) 494, 552
Sse9I AATT 5 cut(s) 41, 449, 564, 726, 840
SseBI AGGCCT 1 cut(s) 17
SsiI CCGC 3 cut(s) 825, 887, 946
SspMI CTAG 1 cut(s) 138
StuI AGGCCT 1 cut(s) 17
StyD4I CCNGG 4 cut(s) 17, 216, 661, 703
TaaI ACNGT 1 cut(s) 620
TaqI TCGA 3 cut(s) 337, 528, 933
TasI AATT 5 cut(s) 41, 449, 564, 726, 840
TauI GCSGC 1 cut(s) 827
TfiI GAWTC 4 cut(s) 598, 676, 758, 935
Tru1I TTAA 3 cut(s) 198, 609, 725
Tru9I TTAA 3 cut(s) 198, 609, 725
TseI GCWGC 7 cut(s) 107, 266, 269, 827, 830, 833, 836
TspDTI ATGAA 4 cut(s) 398, 498, 688, 747
TspGWI ACGGA 1 cut(s) 380
VpaK11BI GGWCC 2 cut(s) 494, 552
XagI CCTNNNNNAGG 1 cut(s) 375
XcmI CCANNNNNNNNNTGG 1 cut(s) 83
XspI CTAG 1 cut(s) 138
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.