Rh3DG042600

Belongs to the cysteine synthase cystathionine beta- synthase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0001773
Physical Location & Seq
Forward (+)
2780775 .. 2786075
5301 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG042600.1

Sequence Viewer

Length: 822 bp
ATGGTGGAAGAGAAGGCTTGGATTGCAAAAGATGTTACTGAATTGGTTGGCAACACTCCATTGGTGTATCTCAACCATGTCGTAGATGGCTGTGTGGCACGGGTTGCTGCTAAGCTGGAGATGATGGAGCCTTGCTCTAGCGTCAAGGATAGGATTGGATACAGTATGATCACAGATGCTGAGGAGAAGGGTCTTATTAAGGCTGGTGAGAGTGTCCTGGTCGAGCCTACTAGTGGCAATACTGGCATAGGATTGGCGTTTATGGCAGCTGCTAAGGGTTACAAACTAATAATCACCATGCCTGCTTCAATGAGTCTTGAAAGACGAACCATTCTTCGAGGTTTTGGAGCTGAGCTTGTTCTCACAGATCCCGCCAAAGGCATGAAGGGGGCTGTTCAGAAGGCACAAGAGATAGTGGACAAGACACCCAATGCTTATATGCTTCAGCAATTTGAGAACCCTGCAAACCCAAAGGTACATTATGAAACTACTGGACCAGAGATCTGGAGAGGCTCTGCTGGTAAAGTCGACGCCTTTGTTTCTGGGATAGGGACTGGAGGTACAATAACAGGTGCTGGGAAGTACCTCAAAGAGCAAAATCCTGATGTTAAGCTCTACGGTGTAGAACCAGTTGAAAGTGCTGTCTTGTCTGGAGGGCGACCTGGCCCTCACAAGATTCAAGGAATTGGTGCTGGCTTCATCCCTGGAGTTTTAGATGTCAGCCTAATTGATGAAGTTATCCAAATATCAAGTGAAGAAGCAATTGAAACAGCCAAGCGTCTAGCATTGAAGGAAGGTTTGTTGGTAAGTCCACAACCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00270 ko00920 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 map00270 map00920 map01100 map01110 map01120 map01130 map01200 map01230
Pfam Domains
Protein Families
PALP

Protein Analysis

273

Amino Acids

28.94

Weight (kDa)

5.42

Isoelectric Point (pI)

29.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PALP PF00291 12 - 271 3.7e-68 Pyridoxal-phosphate dependent enzyme
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 528
AciI CCGC 1 cut(s) 372
AclWI GGATC 1 cut(s) 362
AcuI CTGAAG 1 cut(s) 428
AcyI GRCGYC 1 cut(s) 531
AfaI GTAC 3 cut(s) 477, 562, 584
AfiI CCNNNNNNNGG 2 cut(s) 233, 377
AgsI TTSAA 6 cut(s) 309, 320, 635, 680, 767, 790
AhlI ACTAGT 1 cut(s) 230
AjnI CCWGG 3 cut(s) 216, 661, 703
AluBI AGCT 5 cut(s) 115, 269, 350, 355, 613
AluI AGCT 5 cut(s) 115, 269, 350, 355, 613
AlwI GGATC 1 cut(s) 362
AlwNI CAGNNNCTG 2 cut(s) 179, 575
AoxI GGCC 1 cut(s) 664
ApeKI GCWGC 3 cut(s) 107, 266, 269
AspS9I GGNCC 2 cut(s) 494, 665
AsuHPI GGTGA 2 cut(s) 218, 286
AvaII GGWCC 1 cut(s) 494
BbvCI CCTCAGC 1 cut(s) 180
BbvI GCAGC 3 cut(s) 94, 256, 278
BccI CCATC 2 cut(s) 80, 118
BciT130I CCWGG 3 cut(s) 218, 663, 705
BciVI GTATCC 1 cut(s) 152
BclI TGATCA 1 cut(s) 168
BcuI ACTAGT 1 cut(s) 230
BfaI CTAG 3 cut(s) 138, 231, 782
BfuI GTATCC 1 cut(s) 152
BglII AGATCT 1 cut(s) 501
BisI GCNGC 3 cut(s) 108, 267, 270
BlpI GCTNAGC 2 cut(s) 111, 351
BlsI GCNGC 3 cut(s) 109, 268, 271
Bme1390I CCNGG 3 cut(s) 218, 663, 705
Bme18I GGWCC 1 cut(s) 494
BmgT120I GGNCC 2 cut(s) 494, 665
BmiI GGNNCC 1 cut(s) 129
BmrFI CCNGG 3 cut(s) 218, 663, 705
BmsI GCATC 1 cut(s) 166
BplI GAGNNNNNCTC 2 cut(s) 119, 151
BpmI CTGGAG 5 cut(s) 137, 526, 576, 672, 726
Bpu10I CCTNAGC 2 cut(s) 180, 273
Bpu1102I GCTNAGC 2 cut(s) 111, 351
BsaHI GRCGYC 1 cut(s) 531
BsaJI CCNNGG 1 cut(s) 703
Bsc4I CCNNNNNNNGG 2 cut(s) 233, 377
Bse1I ACTGG 4 cut(s) 247, 496, 559, 629
BseBI CCWGG 3 cut(s) 218, 663, 705
BseDI CCNNGG 1 cut(s) 703
BseGI GGATG 1 cut(s) 699
BseLI CCNNNNNNNGG 2 cut(s) 233, 377
BseMII CTCAG 2 cut(s) 171, 342
BseNI ACTGG 4 cut(s) 247, 496, 559, 629
BseRI GAGGAG 1 cut(s) 197
BseXI GCAGC 3 cut(s) 94, 256, 278
BseYI CCCAGC 1 cut(s) 575
BshFI GGCC 1 cut(s) 666
BslFI GGGAC 1 cut(s) 565
BslI CCNNNNNNNGG 2 cut(s) 233, 377
BsmFI GGGAC 1 cut(s) 565
BsnI GGCC 1 cut(s) 666
Bsp143I GATC 3 cut(s) 168, 367, 501
Bsp1720I GCTNAGC 2 cut(s) 111, 351
BspACI CCGC 1 cut(s) 372
BspANI GGCC 1 cut(s) 666
BspCNI CTCAG 2 cut(s) 172, 343
BspLI GGNNCC 1 cut(s) 129
BspPI GGATC 1 cut(s) 362
BsrI ACTGG 4 cut(s) 247, 496, 559, 629
BssECI CCNNGG 1 cut(s) 703
BssMI GATC 3 cut(s) 168, 367, 501
BssNI GRCGYC 1 cut(s) 531
Bst2UI CCWGG 3 cut(s) 218, 663, 705
Bst4CI ACNGT 2 cut(s) 164, 620
Bst6I CTCTTC 1 cut(s) 3
BstACI GRCGYC 1 cut(s) 531
BstAPI GCANNNNNTGC 1 cut(s) 104
BstC8I GCNNGC 2 cut(s) 303, 694
BstDEI CTNAG 4 cut(s) 111, 180, 273, 351
BstF5I GGATG 1 cut(s) 699
BstKTI GATC 3 cut(s) 171, 370, 504
BstMBI GATC 3 cut(s) 168, 367, 501
BstMWI GCNNNNNNNGC 4 cut(s) 23, 104, 243, 263
BstNI CCWGG 3 cut(s) 218, 663, 705
BstSCI CCNGG 3 cut(s) 216, 661, 703
BstV1I GCAGC 3 cut(s) 94, 256, 278
BstX2I RGATCY 2 cut(s) 367, 501
BstXI CCANNNNNNTGG 1 cut(s) 504
BstYI RGATCY 2 cut(s) 367, 501
BsuI GTATCC 1 cut(s) 152
BsuRI GGCC 1 cut(s) 666
BtsCI GGATG 1 cut(s) 699
Cac8I GCNNGC 2 cut(s) 303, 694
CaiI CAGNNNCTG 2 cut(s) 179, 575
Cfr13I GGNCC 2 cut(s) 494, 665
CseI GACGC 3 cut(s) 130, 539, 767
Csp6I GTAC 3 cut(s) 476, 561, 583
CviAII CATG 3 cut(s) 77, 298, 382
CviQI GTAC 3 cut(s) 476, 561, 583
DdeI CTNAG 4 cut(s) 111, 180, 273, 351
DpnI GATC 3 cut(s) 170, 369, 503
DpnII GATC 3 cut(s) 168, 367, 501
Eam1104I CTCTTC 1 cut(s) 3
EarI CTCTTC 1 cut(s) 3
Eco47I GGWCC 1 cut(s) 494
Eco57I CTGAAG 1 cut(s) 428
EcoRII CCWGG 3 cut(s) 216, 661, 703
FaeI CATG 3 cut(s) 80, 301, 385
FaqI GGGAC 1 cut(s) 565
FatI CATG 3 cut(s) 76, 297, 381
FauI CCCGC 1 cut(s) 379
FbaI TGATCA 1 cut(s) 168
FblI GTMKAC 1 cut(s) 528
Fnu4HI GCNGC 3 cut(s) 108, 267, 270
FokI GGATG 1 cut(s) 686
Fsp4HI GCNGC 3 cut(s) 108, 267, 270
FspBI CTAG 3 cut(s) 138, 231, 782
GluI GCNGC 3 cut(s) 108, 267, 270
GsaI CCCAGC 1 cut(s) 579
GsuI CTGGAG 5 cut(s) 137, 526, 576, 672, 726
HaeIII GGCC 1 cut(s) 666
HgaI GACGC 3 cut(s) 130, 539, 767
Hin1I GRCGYC 1 cut(s) 531
Hin1II CATG 3 cut(s) 80, 301, 385
HincII GTYRAC 1 cut(s) 529
HindII GTYRAC 1 cut(s) 529
HinfI GANTC 2 cut(s) 313, 676
HphI GGTGA 2 cut(s) 218, 286
Hpy166II GTNNAC 3 cut(s) 418, 529, 812
Hpy188I TCNGA 1 cut(s) 399
Hpy188III TCNNGA 4 cut(s) 317, 505, 602, 651
Hpy8I GTNNAC 3 cut(s) 418, 529, 812
Hpy99I CGWCG 1 cut(s) 533
HpyAV CCTTC 6 cut(s) 7, 181, 379, 394, 784, 788
HpyCH4III ACNGT 2 cut(s) 164, 620
HpyCH4V TGCA 2 cut(s) 26, 464
HpyF10VI GCNNNNNNNGC 4 cut(s) 23, 104, 243, 263
HpyF3I CTNAG 4 cut(s) 111, 180, 273, 351
Hsp92I GRCGYC 1 cut(s) 531
Hsp92II CATG 3 cut(s) 80, 301, 385
Ksp22I TGATCA 1 cut(s) 168
Kzo9I GATC 3 cut(s) 168, 367, 501
LmnI GCTCC 2 cut(s) 127, 347
Lsp1109I GCAGC 3 cut(s) 94, 256, 278
LweI GCATC 1 cut(s) 166
MaeI CTAG 3 cut(s) 138, 231, 782
MaeIII GTNAC 2 cut(s) 34, 278
MalI GATC 3 cut(s) 170, 369, 503
MboI GATC 3 cut(s) 168, 367, 501
MboII GAAGA 3 cut(s) 20, 326, 767
MfeI CAATTG 1 cut(s) 762
MflI RGATCY 2 cut(s) 367, 501
MluCI AATT 5 cut(s) 41, 449, 684, 726, 762
MlyI GAGTC 1 cut(s) 322
MnlI CCTC 7 cut(s) 175, 332, 503, 551, 596, 647, 678
MseI TTAA 2 cut(s) 198, 609
MspA1I CMGCKG 1 cut(s) 269
MspR9I CCNGG 3 cut(s) 218, 663, 705
MunI CAATTG 1 cut(s) 762
MvaI CCWGG 3 cut(s) 218, 663, 705
MwoI GCNNNNNNNGC 4 cut(s) 23, 104, 243, 263
NdeII GATC 3 cut(s) 168, 367, 501
NlaIII CATG 3 cut(s) 80, 301, 385
NlaIV GGNNCC 1 cut(s) 129
PfeI GAWTC 1 cut(s) 676
PkrI GCNGC 3 cut(s) 109, 268, 271
PleI GAGTC 1 cut(s) 321
PpsI GAGTC 1 cut(s) 321
Psp6I CCWGG 3 cut(s) 216, 661, 703
PspFI CCCAGC 1 cut(s) 575
PspGI CCWGG 3 cut(s) 216, 661, 703
PspN4I GGNNCC 1 cut(s) 129
PspPI GGNCC 2 cut(s) 494, 665
PstNI CAGNNNCTG 2 cut(s) 179, 575
PsuI RGATCY 2 cut(s) 367, 501
PvuII CAGCTG 1 cut(s) 269
RsaI GTAC 3 cut(s) 477, 562, 584
RsaNI GTAC 3 cut(s) 476, 561, 583
SalI GTCGAC 1 cut(s) 527
SaqAI TTAA 2 cut(s) 198, 609
SatI GCNGC 3 cut(s) 108, 267, 270
Sau3AI GATC 3 cut(s) 168, 367, 501
Sau96I GGNCC 2 cut(s) 494, 665
SchI GAGTC 1 cut(s) 322
ScrFI CCNGG 3 cut(s) 218, 663, 705
SfaNI GCATC 1 cut(s) 166
SinI GGWCC 1 cut(s) 494
SpeI ACTAGT 1 cut(s) 230
Sse9I AATT 5 cut(s) 41, 449, 684, 726, 762
SsiI CCGC 1 cut(s) 372
SspMI CTAG 3 cut(s) 138, 231, 782
StyD4I CCNGG 3 cut(s) 216, 661, 703
TaaI ACNGT 2 cut(s) 164, 620
TaqI TCGA 3 cut(s) 222, 337, 528
TasI AATT 5 cut(s) 41, 449, 684, 726, 762
TfiI GAWTC 1 cut(s) 676
Tru1I TTAA 2 cut(s) 198, 609
Tru9I TTAA 2 cut(s) 198, 609
TseI GCWGC 3 cut(s) 107, 266, 269
TspDTI ATGAA 4 cut(s) 398, 498, 688, 747
VpaK11BI GGWCC 1 cut(s) 494
XcmI CCANNNNNNNNNTGG 1 cut(s) 83
XmiI GTMKAC 1 cut(s) 528
XspI CTAG 3 cut(s) 138, 231, 782
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.