Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0001773

Physical Location & Seq

Genomic Coordinates Reverse (-)

29326476 .. 29330565

Gene Structure 4090 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G338400.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 978 bp

ATGGGGGAGGAGAATTCTGGGATTGCAAAGGATGTCACTGAATTAATTGGTAAAACACCATTGGTGTATCTCAACCATGTTGTAGATGGCTGTGTAGCAAAAATTGCTGCTAAGCTGGAGATGATGGAACCCTGCTCTAGTGTCAAAGACAGGATCGGATACAGTATGATTAAAGATGCTGAGGAGAAAGGTCTCATTAAGCCGGGTGAGAGTGTCCTGATTGAACCTACGAGTGGCAATACTGGCATAGGATTGGCATTTATGGCAGCTGCTAAGGGTTACAAACTAATAATCACCATGCCTGCTTCAATGAGTCTCGAAAGACGAACCATTCTTCTAGGATTTGGGGCTGAGCTTGTCCTCACAGATCCAGCCAGAGGCATGAAAGGGGCTGTTCAGAAGGCAGAAGAGATAGTGGCAAAGACTCCCAATGCTTATATGCTACAGCAATTTGAAAACCATGCCAACCCAAAGGTACACTATGAAACTACTGGACCAGAAATCTGGGAAGGCTCTGGTGGTAAAGCCGATGCCTTTGTTTCTGGGATAGGAACAGGAGGTACAATAACAGGTGTTGGGAAGTACCTCAAGGAGCAAAACCCAAACATCAAGCTCTATGGTGTAGAACCAGTTGAAAGTGCTGTTTTGTCTGGAGGGAAACCCGGCCCTCACAAGATTCAAGGAATTGGTGCTGGCTTCATCCCTGGAGTTTTAGATGTCAACTTGATTGACGAAGTTATTCAAATATCAAGTGAAGAAGCTATAGAAACTGCTAAGCAGCTTGCATTGAAAGAAGGTTTGCTGGTGGGGATATCATCCGGTGCTGCTGCTGCTGCTGCGATTGAAATTGCAAAGAGGCCAGAAAATGCTGGAAAGCTCATTGTTGTGGTCTTCCCCAGCTTTGGAGAGCGTTATCTATCCTCTGTGTTGTTCGAATCTGTGAAGCGGGAGGCTGAGAATATGGTTTTTGAGCCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00270 ko00920 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 map00270 map00920 map01100 map01110 map01120 map01130 map01200 map01230

Pfam Domains

Protein Families

PALP

Protein Analysis

326

Amino Acids

34.3

Weight (kDa)

5.27

Isoelectric Point (pI)

32.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001773)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22460 AT4G14880 AT4G14880 AT4G14880 AT4G14880 AT4G14880
fragaria_vesca	FvH4_4g15640 FvH4_4g15640 FvH4_4g15640 FvH4_4g15640 FvH4_4g15640 FvH4_4g15640 FvH4_4g15640 FvH4_6g03700 FvH4_6g03700 FvH4_6g03700 FvH4_6g03700 FvH4_6g03700
malus_domestica	MD04G1219000.v1.1 MD12G1236000.v1.1 MD13G1193400.v1.1 MD16G1194200.v1.1
prunus_persica	Prupe.1G014000_v2.0.a1 Prupe.6G338400_v2.0.a1 Prupe.6G338400_v2.0.a1
pyrus_communis	pycom04g19440 pycom12g21720 pycom13g16570
rosa_chinensis	RchiOBHm_Chr3g0452241 RchiOBHm_Chr4g0416171
rosa_laevigata	RLG00000008009 RLG00000025614
rosa_multiflora	Rmu_sc0001145.1_g000001 Rmu_sc0010928.1_g000004 Rmu_sc0031164.1_g000006 Rmu_sc0042623.1_g000001
rosa_roxburghii	Rroxscaffold_5G00360030 Rroxscaffold_6G00429370
rosa_rugosa	Rorug02G0639500 Rorug02G0639600 Rorug04G0139300 Rorug04G0139400 Rorug04G0139500
rosa_samantha	Rh3DG042600 Rh4BG199000
rosa_wichuraiana	Rw3G003170 Rw4G017040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	946
AclWI	GGATC	2 cut(s)	161, 362
AcsI	RAATTY	1 cut(s)	13
AfaI	GTAC	3 cut(s)	477, 562, 584
AfiI	CCNNNNNNNGG	3 cut(s)	233, 377, 902
AgsI	TTSAA	8 cut(s)	224, 309, 455, 635, 680, 743, 790, 845
AjnI	CCWGG	1 cut(s)	703
AluBI	AGCT	8 cut(s)	115, 269, 355, 613, 761, 781, 877, 900
AluI	AGCT	8 cut(s)	115, 269, 355, 613, 761, 781, 877, 900
Alw26I	GTCTC	2 cut(s)	197, 320
AlwI	GGATC	2 cut(s)	161, 362
AoxI	GGCC	2 cut(s)	664, 857
ApeKI	GCWGC	9 cut(s)	107, 266, 269, 778, 824, 827, 830, 833, 836
ApoI	RAATTY	1 cut(s)	13
AseI	ATTAAT	1 cut(s)	44
Asp700I	GAANNNNTTC	1 cut(s)	738
AspS9I	GGNCC	2 cut(s)	494, 665
AsuC2I	CCSGG	2 cut(s)	204, 663
AsuHPI	GGTGA	2 cut(s)	218, 286
AsuII	TTCGAA	1 cut(s)	933
AvaII	GGWCC	1 cut(s)	494
BanII	GRGCYC	1 cut(s)	975
BbsI	GAAGAC	1 cut(s)	883
BbvCI	CCTCAGC	1 cut(s)	180
BbvI	GCAGC	9 cut(s)	94, 256, 278, 790, 811, 814, 817, 820, 823
BccI	CCATC	2 cut(s)	80, 118
BciT130I	CCWGG	1 cut(s)	705
BciVI	GTATCC	1 cut(s)	152
BcnI	CCSGG	2 cut(s)	204, 663
BcoDI	GTCTC	2 cut(s)	197, 320
BfaI	CTAG	2 cut(s)	138, 338
BfmI	CTRYAG	2 cut(s)	443, 762
BfuI	GTATCC	1 cut(s)	152
BisI	GCNGC	9 cut(s)	108, 267, 270, 779, 825, 828, 831, 834, 837
BlpI	GCTNAGC	3 cut(s)	111, 351, 774
BlsI	GCNGC	9 cut(s)	109, 268, 271, 780, 826, 829, 832, 835, 838
Bme1390I	CCNGG	3 cut(s)	204, 663, 705
Bme18I	GGWCC	1 cut(s)	494
BmgT120I	GGNCC	2 cut(s)	494, 665
BmiI	GGNNCC	1 cut(s)	129
BmrFI	CCNGG	3 cut(s)	204, 663, 705
BmsI	GCATC	2 cut(s)	166, 520
BpiI	GAAGAC	1 cut(s)	883
BpmI	CTGGAG	3 cut(s)	137, 672, 726
Bpu10I	CCTNAGC	2 cut(s)	180, 273
Bpu1102I	GCTNAGC	3 cut(s)	111, 351, 774
Bpu14I	TTCGAA	1 cut(s)	933
BpuEI	CTTGAG	1 cut(s)	572
BpuMI	CCSGG	2 cut(s)	204, 663
BsaI	GGTCTC	1 cut(s)	197
BsaJI	CCNNGG	1 cut(s)	703
BsaWI	WCCGGW	1 cut(s)	818
Bsc4I	CCNNNNNNNGG	3 cut(s)	233, 377, 902
Bse1I	ACTGG	3 cut(s)	247, 496, 629
BseBI	CCWGG	1 cut(s)	705
BseDI	CCNNGG	1 cut(s)	703
BseGI	GGATG	3 cut(s)	37, 699, 815
BseLI	CCNNNNNNNGG	3 cut(s)	233, 377, 902
BseMII	CTCAG	3 cut(s)	171, 342, 945
BseNI	ACTGG	3 cut(s)	247, 496, 629
BseRI	GAGGAG	2 cut(s)	23, 197
BseXI	GCAGC	9 cut(s)	94, 256, 278, 790, 811, 814, 817, 820, 823
BseYI	CCCAGC	1 cut(s)	896
BshFI	GGCC	2 cut(s)	666, 859
BsiSI	CCGG	3 cut(s)	203, 663, 819
BslI	CCNNNNNNNGG	3 cut(s)	233, 377, 902
BsmAI	GTCTC	2 cut(s)	197, 320
BsnI	GGCC	2 cut(s)	666, 859
Bso31I	GGTCTC	1 cut(s)	197
Bsp119I	TTCGAA	1 cut(s)	933
Bsp1286I	GDGCHC	1 cut(s)	975
Bsp143I	GATC	2 cut(s)	153, 367
Bsp1720I	GCTNAGC	3 cut(s)	111, 351, 774
BspACI	CCGC	1 cut(s)	946
BspANI	GGCC	2 cut(s)	666, 859
BspCNI	CTCAG	3 cut(s)	172, 343, 946
BspLI	GGNNCC	1 cut(s)	129
BspPI	GGATC	2 cut(s)	161, 362
BspT104I	TTCGAA	1 cut(s)	933
BspTNI	GGTCTC	1 cut(s)	197
BsrI	ACTGG	3 cut(s)	247, 496, 629
BssECI	CCNNGG	1 cut(s)	703
BssMI	GATC	2 cut(s)	153, 367
Bst2UI	CCWGG	1 cut(s)	705
Bst4CI	ACNGT	1 cut(s)	164
Bst6I	CTCTTC	1 cut(s)	402
BstAPI	GCANNNNNTGC	1 cut(s)	104
BstBI	TTCGAA	1 cut(s)	933
BstC8I	GCNNGC	3 cut(s)	303, 694, 783
BstDEI	CTNAG	6 cut(s)	111, 180, 273, 351, 774, 954
BstF5I	GGATG	3 cut(s)	37, 699, 815
BstKTI	GATC	2 cut(s)	156, 370
BstMAI	GTCTC	2 cut(s)	197, 320
BstMBI	GATC	2 cut(s)	153, 367
BstMWI	GCNNNNNNNGC	6 cut(s)	104, 243, 263, 830, 833, 836
BstNI	CCWGG	1 cut(s)	705
BstSCI	CCNGG	3 cut(s)	202, 661, 703
BstSFI	CTRYAG	2 cut(s)	443, 762
BstV1I	GCAGC	9 cut(s)	94, 256, 278, 790, 811, 814, 817, 820, 823
BstV2I	GAAGAC	1 cut(s)	883
BstX2I	RGATCY	1 cut(s)	367
BstXI	CCANNNNNNTGG	1 cut(s)	504
BstYI	RGATCY	1 cut(s)	367
BsuI	GTATCC	1 cut(s)	152
BsuRI	GGCC	2 cut(s)	666, 859
BtsCI	GGATG	3 cut(s)	37, 699, 815
BtsIMutI	CAGTG	1 cut(s)	36
Cac8I	GCNNGC	3 cut(s)	303, 694, 783
Cfr13I	GGNCC	2 cut(s)	494, 665
Csp6I	GTAC	3 cut(s)	476, 561, 583
CviAII	CATG	4 cut(s)	77, 298, 382, 461
CviQI	GTAC	3 cut(s)	476, 561, 583
DdeI	CTNAG	6 cut(s)	111, 180, 273, 351, 774, 954
DpnI	GATC	2 cut(s)	155, 369
DpnII	GATC	2 cut(s)	153, 367
Eam1104I	CTCTTC	1 cut(s)	402
EarI	CTCTTC	1 cut(s)	402
Eco24I	GRGCYC	1 cut(s)	975
Eco31I	GGTCTC	1 cut(s)	197
Eco32I	GATATC	1 cut(s)	813
Eco47I	GGWCC	1 cut(s)	494
EcoRI	GAATTC	1 cut(s)	13
EcoRII	CCWGG	1 cut(s)	703
EcoRV	GATATC	1 cut(s)	813
EcoT38I	GRGCYC	1 cut(s)	975
FaeI	CATG	4 cut(s)	80, 301, 385, 464
FatI	CATG	4 cut(s)	76, 297, 381, 460
FauI	CCCGC	1 cut(s)	939
Fnu4HI	GCNGC	9 cut(s)	108, 267, 270, 779, 825, 828, 831, 834, 837
FokI	GGATG	3 cut(s)	44, 686, 802
FriOI	GRGCYC	1 cut(s)	975
Fsp4HI	GCNGC	9 cut(s)	108, 267, 270, 779, 825, 828, 831, 834, 837
FspBI	CTAG	2 cut(s)	138, 338
GluI	GCNGC	9 cut(s)	108, 267, 270, 779, 825, 828, 831, 834, 837
GsaI	CCCAGC	1 cut(s)	900
GsuI	CTGGAG	3 cut(s)	137, 672, 726
HaeIII	GGCC	2 cut(s)	666, 859
HapII	CCGG	3 cut(s)	203, 663, 819
Hin1II	CATG	4 cut(s)	80, 301, 385, 464
HincII	GTYRAC	1 cut(s)	721
HindII	GTYRAC	1 cut(s)	721
HinfI	GANTC	4 cut(s)	313, 424, 676, 935
HpaII	CCGG	3 cut(s)	203, 663, 819
HphI	GGTGA	2 cut(s)	218, 286
Hpy166II	GTNNAC	2 cut(s)	478, 721
Hpy188I	TCNGA	2 cut(s)	158, 399
Hpy188III	TCNNGA	3 cut(s)	217, 317, 651
Hpy8I	GTNNAC	2 cut(s)	478, 721
HpyAV	CCTTC	3 cut(s)	394, 503, 788
HpyCH4III	ACNGT	1 cut(s)	164
HpyCH4V	TGCA	3 cut(s)	26, 785, 851
HpyF10VI	GCNNNNNNNGC	6 cut(s)	104, 243, 263, 830, 833, 836
HpyF3I	CTNAG	6 cut(s)	111, 180, 273, 351, 774, 954
Hsp92II	CATG	4 cut(s)	80, 301, 385, 464
Kzo9I	GATC	2 cut(s)	153, 367
LmnI	GCTCC	1 cut(s)	592
Lsp1109I	GCAGC	9 cut(s)	94, 256, 278, 790, 811, 814, 817, 820, 823
LweI	GCATC	2 cut(s)	166, 520
MaeI	CTAG	2 cut(s)	138, 338
MaeIII	GTNAC	2 cut(s)	34, 278
MalI	GATC	2 cut(s)	155, 369
MboI	GATC	2 cut(s)	153, 367
MboII	GAAGA	4 cut(s)	326, 419, 767, 883
MflI	RGATCY	1 cut(s)	367
MhlI	GDGCHC	1 cut(s)	975
MluCI	AATT	7 cut(s)	13, 41, 45, 102, 449, 684, 846
MlyI	GAGTC	2 cut(s)	322, 418
MroXI	GAANNNNTTC	1 cut(s)	738
MseI	TTAA	3 cut(s)	44, 171, 198
MslI	CAYNNNNRTG	1 cut(s)	884
MspA1I	CMGCKG	1 cut(s)	269
MspI	CCGG	3 cut(s)	203, 663, 819
MspR9I	CCNGG	3 cut(s)	204, 663, 705
MvaI	CCWGG	1 cut(s)	705
MwoI	GCNNNNNNNGC	6 cut(s)	104, 243, 263, 830, 833, 836
NciI	CCSGG	2 cut(s)	204, 663
NdeII	GATC	2 cut(s)	153, 367
NlaIII	CATG	4 cut(s)	80, 301, 385, 464
NlaIV	GGNNCC	1 cut(s)	129
NmuCI	GTSAC	1 cut(s)	34
NspV	TTCGAA	1 cut(s)	933
PdmI	GAANNNNTTC	1 cut(s)	738
PfeI	GAWTC	2 cut(s)	676, 935
PkrI	GCNGC	9 cut(s)	109, 268, 271, 780, 826, 829, 832, 835, 838
PleI	GAGTC	2 cut(s)	321, 418
PpsI	GAGTC	2 cut(s)	321, 418
PshBI	ATTAAT	1 cut(s)	44
Psp6I	CCWGG	1 cut(s)	703
PspFI	CCCAGC	1 cut(s)	896
PspGI	CCWGG	1 cut(s)	703
PspN4I	GGNNCC	1 cut(s)	129
PspPI	GGNCC	2 cut(s)	494, 665
PsrI	GAACNNNNNNTAC	2 cut(s)	544, 576
PsuI	RGATCY	1 cut(s)	367
PvuII	CAGCTG	1 cut(s)	269
RsaI	GTAC	3 cut(s)	477, 562, 584
RsaNI	GTAC	3 cut(s)	476, 561, 583
RseI	CAYNNNNRTG	1 cut(s)	884
SaqAI	TTAA	3 cut(s)	44, 171, 198
SatI	GCNGC	9 cut(s)	108, 267, 270, 779, 825, 828, 831, 834, 837
Sau3AI	GATC	2 cut(s)	153, 367
Sau96I	GGNCC	2 cut(s)	494, 665
SchI	GAGTC	2 cut(s)	322, 418
ScrFI	CCNGG	3 cut(s)	204, 663, 705
SduI	GDGCHC	1 cut(s)	975
SfaNI	GCATC	2 cut(s)	166, 520
SfcI	CTRYAG	2 cut(s)	443, 762
SfuI	TTCGAA	1 cut(s)	933
SinI	GGWCC	1 cut(s)	494
SmiMI	CAYNNNNRTG	1 cut(s)	884
SmlI	CTYRAG	1 cut(s)	587
SmoI	CTYRAG	1 cut(s)	587
Sse9I	AATT	7 cut(s)	13, 41, 45, 102, 449, 684, 846
SsiI	CCGC	1 cut(s)	946
SspMI	CTAG	2 cut(s)	138, 338
StyD4I	CCNGG	3 cut(s)	202, 661, 703
TaaI	ACNGT	1 cut(s)	164
TaqI	TCGA	2 cut(s)	318, 933
TasI	AATT	7 cut(s)	13, 41, 45, 102, 449, 684, 846
TfiI	GAWTC	2 cut(s)	676, 935
Tru1I	TTAA	3 cut(s)	44, 171, 198
Tru9I	TTAA	3 cut(s)	44, 171, 198
TscAI	CASTG	1 cut(s)	43
TseFI	GTSAC	1 cut(s)	34
TseI	GCWGC	9 cut(s)	107, 266, 269, 778, 824, 827, 830, 833, 836
Tsp45I	GTSAC	1 cut(s)	34
TspDTI	ATGAA	3 cut(s)	398, 498, 688
TspRI	CASTG	1 cut(s)	43
VpaK11BI	GGWCC	1 cut(s)	494
VspI	ATTAAT	1 cut(s)	44
XapI	RAATTY	1 cut(s)	13
XcmI	CCANNNNNNNNNTGG	1 cut(s)	83
XmnI	GAANNNNTTC	1 cut(s)	738
XspI	CTAG	2 cut(s)	138, 338

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.