Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0031164.1

Orthogroup ID

OG0001773

Physical Location & Seq

Genomic Coordinates Reverse (-)

24858 .. 27426

Gene Structure 2569 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0031164.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 597 bp

atgaaaggggctgttcaaaaggctgaggagatattggccaagacacctaatgcttacatgctccagcagtttgagaatcctgccaacccaaaggtacattatgaaaccactggaccggagatatgggaaggcactggagggaaagtagatgcttttgtttctgggataggtacaggtggaactataactggtgcaggaaaatatcttaaagagaagaatcctagtgtaaagctgtatggtgtggaaccagttgagagtccagtcctaactggaggaaagcctggtccacacaagatccaaggaataggtgctggttttgtcccaggtgtcttggaagtcaatatcattgatgatgtcattcaaatatcaagtgatgaagcaattgaaactgccaagcttcttgcaacaaaagaaggtttgcttgtgggaatatcatctggtgctgctgccgctgctgcaattaggattgcaaagagaccagagaatgctggaaagctcattgttgtggttttcccaagctttggggagagatatctctcctctgtgctgtttgagtcagtgagacgggaagctgaaagcatgacctttgagacctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000096 GO:0000097 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0003824 GO:0004124 GO:0005488 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005773 GO:0005774 GO:0005777 GO:0005829 GO:0005886 GO:0006082 GO:0006520 GO:0006534 GO:0006535 GO:0006563 GO:0006790 GO:0006807 GO:0007568 GO:0008144 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009069 GO:0009070 GO:0009507 GO:0009532 GO:0009536 GO:0009566 GO:0009567 GO:0009570 GO:0009653 GO:0009826 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0010035 GO:0010038 GO:0010043 GO:0016020 GO:0016043 GO:0016049 GO:0016053 GO:0016740 GO:0016765 GO:0019344 GO:0019752 GO:0019842 GO:0019953 GO:0022414 GO:0030154 GO:0030170 GO:0031090 GO:0032501 GO:0032502 GO:0032989 GO:0036094 GO:0040007 GO:0042221 GO:0042579 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044272 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0044703 GO:0044706 GO:0046394 GO:0046686 GO:0048037 GO:0048046 GO:0048468 GO:0048588 GO:0048589 GO:0048856 GO:0048868 GO:0048869 GO:0050662 GO:0050896 GO:0051704 GO:0060560 GO:0070279 GO:0071704 GO:0071840 GO:0071944 GO:0097159 GO:0098588 GO:0098805 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00270 ko00920 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 map00270 map00920 map01100 map01110 map01120 map01130 map01200 map01230

Pfam Domains

Protein Families

PALP

Protein Analysis

198

Amino Acids

20.83

Weight (kDa)

5.54

Isoelectric Point (pI)

36.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001773)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22460 AT4G14880 AT4G14880 AT4G14880 AT4G14880 AT4G14880
fragaria_vesca	FvH4_4g15640 FvH4_4g15640 FvH4_4g15640 FvH4_4g15640 FvH4_4g15640 FvH4_4g15640 FvH4_4g15640 FvH4_6g03700 FvH4_6g03700 FvH4_6g03700 FvH4_6g03700 FvH4_6g03700
malus_domestica	MD04G1219000.v1.1 MD12G1236000.v1.1 MD13G1193400.v1.1 MD16G1194200.v1.1
prunus_persica	Prupe.1G014000_v2.0.a1 Prupe.6G338400_v2.0.a1 Prupe.6G338400_v2.0.a1
pyrus_communis	pycom04g19440 pycom12g21720 pycom13g16570
rosa_chinensis	RchiOBHm_Chr3g0452241 RchiOBHm_Chr4g0416171
rosa_laevigata	RLG00000008009 RLG00000025614
rosa_multiflora	Rmu_sc0001145.1_g000001 Rmu_sc0010928.1_g000004 Rmu_sc0031164.1_g000006 Rmu_sc0042623.1_g000001
rosa_roxburghii	Rroxscaffold_5G00360030 Rroxscaffold_6G00429370
rosa_rugosa	Rorug02G0639500 Rorug02G0639600 Rorug04G0139300 Rorug04G0139400 Rorug04G0139500
rosa_samantha	Rh3DG042600 Rh4BG199000
rosa_wichuraiana	Rw3G003170 Rw4G017040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	521
AciI	CCGC	1 cut(s)	450
AclWI	GGATC	1 cut(s)	289
AcoI	YGGCCR	1 cut(s)	36
AfaI	GTAC	2 cut(s)	96, 172
AfiI	CCNNNNNNNGG	1 cut(s)	521
AgsI	TTSAA	3 cut(s)	17, 362, 386
AjnI	CCWGG	2 cut(s)	280, 322
AluBI	AGCT	5 cut(s)	232, 397, 496, 519, 572
AluI	AGCT	5 cut(s)	232, 397, 496, 519, 572
Alw26I	GTCTC	3 cut(s)	469, 556, 584
AlwI	GGATC	1 cut(s)	289
AoxI	GGCC	1 cut(s)	36
ApeKI	GCWGC	4 cut(s)	443, 446, 452, 455
AspS9I	GGNCC	2 cut(s)	113, 284
AvaII	GGWCC	2 cut(s)	113, 284
BalI	TGGCCA	1 cut(s)	38
BbvCI	CCTCAGC	1 cut(s)	24
BbvI	GCAGC	4 cut(s)	430, 433, 439, 442
BciT130I	CCWGG	2 cut(s)	282, 324
BcoDI	GTCTC	3 cut(s)	469, 556, 584
BfaI	CTAG	1 cut(s)	222
BisI	GCNGC	5 cut(s)	444, 447, 450, 453, 456
BlsI	GCNGC	5 cut(s)	445, 448, 451, 454, 457
Bme1390I	CCNGG	2 cut(s)	282, 324
Bme18I	GGWCC	2 cut(s)	113, 284
BmgT120I	GGNCC	2 cut(s)	113, 284
BmiI	GGNNCC	1 cut(s)	246
BmrFI	CCNGG	2 cut(s)	282, 324
BmsI	GCATC	1 cut(s)	139
BpmI	CTGGAG	3 cut(s)	47, 156, 291
Bpu10I	CCTNAGC	1 cut(s)	24
BsaI	GGTCTC	2 cut(s)	469, 584
BsaJI	CCNNGG	2 cut(s)	298, 322
BsaWI	WCCGGW	1 cut(s)	115
BsaXI	ACNNNNNCTCC	2 cut(s)	129, 159
Bsc4I	CCNNNNNNNGG	1 cut(s)	521
Bse1I	ACTGG	6 cut(s)	115, 139, 193, 248, 260, 274
BseBI	CCWGG	2 cut(s)	282, 324
BseDI	CCNNGG	2 cut(s)	298, 322
BseLI	CCNNNNNNNGG	1 cut(s)	521
BseMII	CTCAG	1 cut(s)	15
BseNI	ACTGG	6 cut(s)	115, 139, 193, 248, 260, 274
BseRI	GAGGAG	2 cut(s)	41, 529
BseXI	GCAGC	4 cut(s)	430, 433, 439, 442
BsgI	GTGCAG	1 cut(s)	213
BshFI	GGCC	1 cut(s)	38
BsiSI	CCGG	1 cut(s)	116
BslFI	GGGAC	1 cut(s)	305
BslI	CCNNNNNNNGG	1 cut(s)	521
BsmAI	GTCTC	3 cut(s)	469, 556, 584
BsmBI	CGTCTC	1 cut(s)	556
BsmFI	GGGAC	1 cut(s)	305
BsmI	GAATGC	1 cut(s)	490
BsnI	GGCC	1 cut(s)	38
Bso31I	GGTCTC	2 cut(s)	469, 584
Bsp143I	GATC	1 cut(s)	294
BspACI	CCGC	1 cut(s)	450
BspANI	GGCC	1 cut(s)	38
BspCNI	CTCAG	1 cut(s)	16
BspLI	GGNNCC	1 cut(s)	246
BspPI	GGATC	1 cut(s)	289
BspTNI	GGTCTC	2 cut(s)	469, 584
BsrI	ACTGG	6 cut(s)	115, 139, 193, 248, 260, 274
BssECI	CCNNGG	2 cut(s)	298, 322
BssMI	GATC	1 cut(s)	294
BssT1I	CCWWGG	1 cut(s)	298
Bst2UI	CCWGG	2 cut(s)	282, 324
BstDEI	CTNAG	1 cut(s)	24
BstKTI	GATC	1 cut(s)	297
BstMAI	GTCTC	3 cut(s)	469, 556, 584
BstMBI	GATC	1 cut(s)	294
BstMWI	GCNNNNNNNGC	3 cut(s)	449, 452, 455
BstNI	CCWGG	2 cut(s)	282, 324
BstNSI	RCATGY	1 cut(s)	61
BstSCI	CCNGG	2 cut(s)	280, 322
BstV1I	GCAGC	4 cut(s)	430, 433, 439, 442
BstX2I	RGATCY	1 cut(s)	294
BstYI	RGATCY	1 cut(s)	294
BsuRI	GGCC	1 cut(s)	38
BtsIMutI	CAGTG	3 cut(s)	108, 132, 564
Cfr13I	GGNCC	2 cut(s)	113, 284
Csp6I	GTAC	2 cut(s)	95, 171
CviAII	CATG	2 cut(s)	58, 580
CviJI	RGCY	9 cut(s)	11, 23, 38, 232, 280, 397, 496, 519, 572
CviKI_1	RGCY	9 cut(s)	11, 23, 38, 232, 280, 397, 496, 519, 572
CviQI	GTAC	2 cut(s)	95, 171
DdeI	CTNAG	1 cut(s)	24
DpnI	GATC	1 cut(s)	296
DpnII	GATC	1 cut(s)	294
EaeI	YGGCCR	1 cut(s)	36
Eco130I	CCWWGG	1 cut(s)	298
Eco31I	GGTCTC	2 cut(s)	469, 584
Eco32I	GATATC	1 cut(s)	533
Eco47I	GGWCC	2 cut(s)	113, 284
EcoRII	CCWGG	2 cut(s)	280, 322
EcoRV	GATATC	1 cut(s)	533
EcoT14I	CCWWGG	1 cut(s)	298
ErhI	CCWWGG	1 cut(s)	298
Esp3I	CGTCTC	1 cut(s)	556
FaeI	CATG	2 cut(s)	61, 583
FaiI	YATR	6 cut(s)	59, 102, 124, 185, 237, 581
FalI	AAGNNNNNCTT	2 cut(s)	405, 437
FaqI	GGGAC	1 cut(s)	305
FatI	CATG	2 cut(s)	57, 579
Fnu4HI	GCNGC	5 cut(s)	444, 447, 450, 453, 456
Fsp4HI	GCNGC	5 cut(s)	444, 447, 450, 453, 456
FspBI	CTAG	1 cut(s)	222
GluI	GCNGC	5 cut(s)	444, 447, 450, 453, 456
GsuI	CTGGAG	3 cut(s)	47, 156, 291
HaeIII	GGCC	1 cut(s)	38
HapII	CCGG	1 cut(s)	116
Hin1II	CATG	2 cut(s)	61, 583
HindIII	AAGCTT	2 cut(s)	395, 517
HinfI	GANTC	4 cut(s)	76, 217, 256, 554
HpaII	CCGG	1 cut(s)	116
Hpy166II	GTNNAC	1 cut(s)	287
Hpy8I	GTNNAC	1 cut(s)	287
HpyAV	CCTTC	2 cut(s)	122, 407
HpyCH4V	TGCA	4 cut(s)	194, 404, 458, 470
HpyF10VI	GCNNNNNNNGC	3 cut(s)	449, 452, 455
HpyF3I	CTNAG	1 cut(s)	24
Hsp92II	CATG	2 cut(s)	61, 583
Kzo9I	GATC	1 cut(s)	294
LmnI	GCTCC	1 cut(s)	66
Lsp1109I	GCAGC	4 cut(s)	430, 433, 439, 442
LweI	GCATC	1 cut(s)	139
MaeI	CTAG	1 cut(s)	222
MalI	GATC	1 cut(s)	296
MboI	GATC	1 cut(s)	294
MboII	GAAGA	1 cut(s)	226
MfeI	CAATTG	1 cut(s)	381
MflI	RGATCY	1 cut(s)	294
MlsI	TGGCCA	1 cut(s)	38
MluCI	AATT	2 cut(s)	381, 459
MluNI	TGGCCA	1 cut(s)	38
MlyI	GAGTC	2 cut(s)	265, 563
MnlI	CCTC	4 cut(s)	19, 131, 266, 550
Mox20I	TGGCCA	1 cut(s)	38
MscI	TGGCCA	1 cut(s)	38
MseI	TTAA	1 cut(s)	207
MslI	CAYNNNNRTG	1 cut(s)	503
Msp20I	TGGCCA	1 cut(s)	38
MspA1I	CMGCKG	1 cut(s)	452
MspI	CCGG	1 cut(s)	116
MspR9I	CCNGG	2 cut(s)	282, 324
MunI	CAATTG	1 cut(s)	381
Mva1269I	GAATGC	1 cut(s)	490
MvaI	CCWGG	2 cut(s)	282, 324
MwoI	GCNNNNNNNGC	3 cut(s)	449, 452, 455
NdeII	GATC	1 cut(s)	294
NlaIII	CATG	2 cut(s)	61, 583
NlaIV	GGNNCC	1 cut(s)	246
NspI	RCATGY	1 cut(s)	61
PctI	GAATGC	1 cut(s)	490
PfeI	GAWTC	2 cut(s)	76, 217
PflMI	CCANNNNNTGG	1 cut(s)	521
PkrI	GCNGC	5 cut(s)	445, 448, 451, 454, 457
PleI	GAGTC	2 cut(s)	264, 562
PpsI	GAGTC	2 cut(s)	264, 562
Psp6I	CCWGG	2 cut(s)	280, 322
PspGI	CCWGG	2 cut(s)	280, 322
PspN4I	GGNNCC	1 cut(s)	246
PspPI	GGNCC	2 cut(s)	113, 284
PsuI	RGATCY	1 cut(s)	294
RsaI	GTAC	2 cut(s)	96, 172
RsaNI	GTAC	2 cut(s)	95, 171
RseI	CAYNNNNRTG	1 cut(s)	503
SaqAI	TTAA	1 cut(s)	207
SatI	GCNGC	5 cut(s)	444, 447, 450, 453, 456
Sau3AI	GATC	1 cut(s)	294
Sau96I	GGNCC	2 cut(s)	113, 284
SchI	GAGTC	2 cut(s)	265, 563
ScrFI	CCNGG	2 cut(s)	282, 324
SfaNI	GCATC	1 cut(s)	139
SinI	GGWCC	2 cut(s)	113, 284
SmiMI	CAYNNNNRTG	1 cut(s)	503
Sse9I	AATT	2 cut(s)	381, 459
SsiI	CCGC	1 cut(s)	450
SspMI	CTAG	1 cut(s)	222
StyD4I	CCNGG	2 cut(s)	280, 322
StyI	CCWWGG	1 cut(s)	298
TasI	AATT	2 cut(s)	381, 459
TauI	GCSGC	1 cut(s)	452
TfiI	GAWTC	2 cut(s)	76, 217
Tru1I	TTAA	1 cut(s)	207
Tru9I	TTAA	1 cut(s)	207
TscAI	CASTG	3 cut(s)	115, 139, 564
TseI	GCWGC	4 cut(s)	443, 446, 452, 455
TspDTI	ATGAA	3 cut(s)	17, 117, 390
TspRI	CASTG	3 cut(s)	115, 139, 564
Van91I	CCANNNNNTGG	1 cut(s)	521
VpaK11BI	GGWCC	2 cut(s)	113, 284
XceI	RCATGY	1 cut(s)	61
XspI	CTAG	1 cut(s)	222

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.