AT4G14880

Belongs to the cysteine synthase cystathionine beta- synthase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0001773
Physical Location & Seq
Reverse (-)
8517960 .. 8520596
2637 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G14880.3

Sequence Viewer

Length: 969 bp
ATGGCCTCGAGAATTGCTAAAGATGTGACTGAATTGATTGGGAACACTCCATTGGTGTATTTGAACAATGTTGCTGAAGGATGTGTTGGTCGTGTTGCTGCTAAGCTTGAGATGATGGAACCGTGCTCTAGCGTCAAAGACAGGATTGGTTTTAGCATGATTTCTGATGCAGAAAAGAAGGGTCTTATCAAACCAGGAGAGAGTGTGCTGATTGAGCCAACAAGTGGAAACACTGGAGTTGGGTTAGCATTCACGGCAGCTGCCAAAGGCTACAAGCTTATTATTACAATGCCAGCTTCTATGAGTACTGAGAGAAGAATCATTCTCTTAGCTTTTGGAGTTGAGTTGGTTTTAACTGACCCAGCTAAGGGCATGAAAGGAGCTATCGCAAAGGCGGAAGAGATTTTGGCGAAAACACCCAATGGTTACATGCTTCAGCAGTTTGAGAACCCTGCCAACCCTAAGATCCACTATGAGACTACGGGACCTGAGATATGGAAAGGCACTGGTGGCAAAATCGATGGCTTTGTTTCTGGGATTGGTACTGGTGGTACCATTACAGGTGCTGGGAAGTATCTTAAAGAACAGAACGCAAACGTCAAGCTGTATGGAGTGGAGCCAGTTGAAAGTGCTATTCTATCCGGTGGGAAGCCAGGTCCTCACAAGATTCAAGGGATAGGAGCTGGTTTTATACCAAGTGTATTGAATGTTGATCTTATTGACGAAGTTGTTCAGGTTTCAAGTGATGAATCCATTGACATGGCAAGGCAGCTTGCTCTTAAAGAAGGTCTTCTTGTGGGAATATCATCCGGTGCAGCAGCTGCTGCAGCAATTAAACTTGCACAGAGGCCAGAAAACGCTGGGAAGCTATTTGTGGCGATATTCCCGAGTTTCGGGGAGAGGTATCTATCAACGGTACTTTTCGATGCGACAAGGAAAGAAGCGGAAGCCATGACCTTCGAGGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000096 GO:0000097 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0003824 GO:0004124 GO:0005488 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005773 GO:0005774 GO:0005777 GO:0005829 GO:0005886 GO:0006082 GO:0006520 GO:0006534 GO:0006535 GO:0006563 GO:0006790 GO:0006807 GO:0007568 GO:0008144 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009069 GO:0009070 GO:0009507 GO:0009532 GO:0009536 GO:0009566 GO:0009567 GO:0009570 GO:0009653 GO:0009826 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0010035 GO:0010038 GO:0010043 GO:0016020 GO:0016043 GO:0016049 GO:0016053 GO:0016740 GO:0016765 GO:0019344 GO:0019752 GO:0019842 GO:0019953 GO:0022414 GO:0030154 GO:0030170 GO:0031090 GO:0032501 GO:0032502 GO:0032989 GO:0036094 GO:0040007 GO:0042221 GO:0042579 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044272 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0044703 GO:0044706 GO:0046394 GO:0046686 GO:0048037 GO:0048046 GO:0048468 GO:0048588 GO:0048589 GO:0048856 GO:0048868 GO:0048869 GO:0050662 GO:0050896 GO:0051704 GO:0060560 GO:0070279 GO:0071704 GO:0071840 GO:0071944 GO:0097159 GO:0098588 GO:0098805 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607
KEGG Pathways
Metabolic & Signaling
ko00270 ko00920 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 map00270 map00920 map01100 map01110 map01120 map01130 map01200 map01230
Pfam Domains
Protein Families
PALP

Protein Analysis

322

Amino Acids

33.8

Weight (kDa)

5.9

Isoelectric Point (pI)

25.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PALP PF00291 9 - 295 2.7e-73 Pyridoxal-phosphate dependent enzyme
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 551
AccB1I GGYRCC 1 cut(s) 551
AccB7I CCANNNNNTGG 1 cut(s) 224
AciI CCGC 2 cut(s) 395, 944
AclWI GGATC 1 cut(s) 460
AcuI CTGAAG 2 cut(s) 96, 419
AfaI GTAC 4 cut(s) 307, 544, 553, 918
AfiI CCNNNNNNNGG 4 cut(s) 224, 367, 368, 893
AgsI TTSAA 5 cut(s) 64, 626, 671, 706, 741
AjnI CCWGG 2 cut(s) 193, 652
AjuI GAANNNNNNNTTGG 4 cut(s) 35, 67, 69, 101
Alw21I GWGCWC 1 cut(s) 128
Alw26I GTCTC 1 cut(s) 470
AlwI GGATC 1 cut(s) 460
AlwNI CAGNNNCTG 3 cut(s) 566, 821, 824
Ama87I CYCGRG 2 cut(s) 7, 886
AoxI GGCC 2 cut(s) 3, 848
ApeKI GCWGC 9 cut(s) 98, 257, 260, 769, 815, 818, 821, 824, 827
Asp700I GAANNNNTTC 2 cut(s) 729, 789
Asp718I GGTACC 1 cut(s) 551
AspS9I GGNCC 2 cut(s) 485, 656
AvaI CYCGRG 2 cut(s) 7, 886
AvaII GGWCC 2 cut(s) 485, 656
BanI GGYRCC 1 cut(s) 551
BbsI GAAGAC 1 cut(s) 782
Bbv12I GWGCWC 1 cut(s) 128
BbvI GCAGC 9 cut(s) 85, 247, 269, 781, 808, 811, 827, 830, 839
BccI CCATC 2 cut(s) 109, 515
BceAI ACGGC 1 cut(s) 270
BciT130I CCWGG 2 cut(s) 195, 654
BcoDI GTCTC 1 cut(s) 470
BfaI CTAG 1 cut(s) 129
BfmI CTRYAG 1 cut(s) 825
BisI GCNGC 9 cut(s) 99, 258, 261, 770, 816, 819, 822, 825, 828
BlpI GCTNAGC 1 cut(s) 102
BlsI GCNGC 9 cut(s) 100, 259, 262, 771, 817, 820, 823, 826, 829
BmcAI AGTACT 1 cut(s) 307
Bme1390I CCNGG 2 cut(s) 195, 654
Bme18I GGWCC 2 cut(s) 485, 656
BmeT110I CYCGRG 2 cut(s) 7, 886
BmgT120I GGNCC 2 cut(s) 485, 656
BmiI GGNNCC 4 cut(s) 120, 486, 553, 618
BmrFI CCNGG 2 cut(s) 195, 654
BmsI GCATC 2 cut(s) 157, 916
BpiI GAAGAC 1 cut(s) 782
BpmI CTGGAG 1 cut(s) 255
Bpu10I CCTNAGC 1 cut(s) 366
Bpu1102I GCTNAGC 1 cut(s) 102
BpuEI CTTGAG 1 cut(s) 128
Bsa29I ATCGAT 1 cut(s) 519
BsaWI WCCGGW 2 cut(s) 641, 809
BsaXI ACNNNNNCTCC 2 cut(s) 189, 219
Bsc4I CCNNNNNNNGG 4 cut(s) 224, 367, 368, 893
Bse1I ACTGG 4 cut(s) 238, 511, 550, 620
BseBI CCWGG 2 cut(s) 195, 654
BseCI ATCGAT 1 cut(s) 519
BseGI GGATG 2 cut(s) 86, 806
BseLI CCNNNNNNNGG 4 cut(s) 224, 367, 368, 893
BseMII CTCAG 2 cut(s) 300, 480
BseNI ACTGG 4 cut(s) 238, 511, 550, 620
BseXI GCAGC 9 cut(s) 85, 247, 269, 781, 808, 811, 827, 830, 839
BseYI CCCAGC 3 cut(s) 361, 566, 860
BsgI GTGCAG 1 cut(s) 834
BshFI GGCC 2 cut(s) 5, 850
BshNI GGYRCC 1 cut(s) 551
BshVI ATCGAT 1 cut(s) 519
BsiHKAI GWGCWC 1 cut(s) 128
BsiHKCI CYCGRG 2 cut(s) 7, 886
BsiSI CCGG 2 cut(s) 642, 810
BslFI GGGAC 1 cut(s) 498
BslI CCNNNNNNNGG 4 cut(s) 224, 367, 368, 893
BsmAI GTCTC 1 cut(s) 470
BsmFI GGGAC 1 cut(s) 498
BsmI GAATGC 1 cut(s) 248
BsnI GGCC 2 cut(s) 5, 850
BsoBI CYCGRG 2 cut(s) 7, 886
Bsp1286I GDGCHC 1 cut(s) 128
Bsp143I GATC 2 cut(s) 465, 712
Bsp1720I GCTNAGC 1 cut(s) 102
BspACI CCGC 2 cut(s) 395, 944
BspANI GGCC 2 cut(s) 5, 850
BspCNI CTCAG 2 cut(s) 301, 481
BspDI ATCGAT 1 cut(s) 519
BspLI GGNNCC 4 cut(s) 120, 486, 553, 618
BspMAI CTGCAG 1 cut(s) 829
BspPI GGATC 1 cut(s) 460
BspT107I GGYRCC 1 cut(s) 551
BsrI ACTGG 4 cut(s) 238, 511, 550, 620
BssMI GATC 2 cut(s) 465, 712
Bst2UI CCWGG 2 cut(s) 195, 654
Bst4CI ACNGT 2 cut(s) 123, 916
Bst6I CTCTTC 1 cut(s) 393
BstAPI GCANNNNNTGC 2 cut(s) 821, 824
BstC8I GCNNGC 2 cut(s) 294, 774
BstDEI CTNAG 6 cut(s) 102, 309, 328, 366, 462, 489
BstF5I GGATG 2 cut(s) 86, 806
BstKTI GATC 2 cut(s) 468, 715
BstMAI GTCTC 1 cut(s) 470
BstMBI GATC 2 cut(s) 465, 712
BstMWI GCNNNNNNNGC 6 cut(s) 214, 254, 510, 821, 824, 827
BstNI CCWGG 2 cut(s) 195, 654
BstNSI RCATGY 1 cut(s) 433
BstSCI CCNGG 2 cut(s) 193, 652
BstSFI CTRYAG 1 cut(s) 825
BstV1I GCAGC 9 cut(s) 85, 247, 269, 781, 808, 811, 827, 830, 839
BstV2I GAAGAC 1 cut(s) 782
BstX2I RGATCY 1 cut(s) 465
BstXI CCANNNNNNTGG 1 cut(s) 760
BstYI RGATCY 1 cut(s) 465
Bsu15I ATCGAT 1 cut(s) 519
BsuRI GGCC 2 cut(s) 5, 850
BsuTUI ATCGAT 1 cut(s) 519
BtsCI GGATG 2 cut(s) 86, 806
BtsIMutI CAGTG 2 cut(s) 231, 504
Cac8I GCNNGC 2 cut(s) 294, 774
CaiI CAGNNNCTG 3 cut(s) 566, 821, 824
Cfr13I GGNCC 2 cut(s) 485, 656
ClaI ATCGAT 1 cut(s) 519
CseI GACGC 1 cut(s) 121
Csp6I GTAC 4 cut(s) 306, 543, 552, 917
CviAII CATG 5 cut(s) 157, 373, 430, 760, 952
CviQI GTAC 4 cut(s) 306, 543, 552, 917
DdeI CTNAG 6 cut(s) 102, 309, 328, 366, 462, 489
DpnI GATC 2 cut(s) 467, 714
DpnII GATC 2 cut(s) 465, 712
Eam1104I CTCTTC 1 cut(s) 393
EarI CTCTTC 1 cut(s) 393
EciI GGCGGA 1 cut(s) 410
Eco47I GGWCC 2 cut(s) 485, 656
Eco57I CTGAAG 2 cut(s) 96, 419
Eco88I CYCGRG 2 cut(s) 7, 886
EcoO109I RGGNCCY 2 cut(s) 485, 656
EcoRII CCWGG 2 cut(s) 193, 652
FaeI CATG 5 cut(s) 160, 376, 433, 763, 955
FalI AAGNNNNNCTT 4 cut(s) 774, 806, 777, 809
FaqI GGGAC 1 cut(s) 498
FatI CATG 5 cut(s) 156, 372, 429, 759, 951
Fnu4HI GCNGC 9 cut(s) 99, 258, 261, 770, 816, 819, 822, 825, 828
FokI GGATG 2 cut(s) 93, 793
Fsp4HI GCNGC 9 cut(s) 99, 258, 261, 770, 816, 819, 822, 825, 828
FspBI CTAG 1 cut(s) 129
GluI GCNGC 9 cut(s) 99, 258, 261, 770, 816, 819, 822, 825, 828
GsaI CCCAGC 3 cut(s) 365, 570, 864
GsuI CTGGAG 1 cut(s) 255
HaeIII GGCC 2 cut(s) 5, 850
HapII CCGG 2 cut(s) 642, 810
HgaI GACGC 1 cut(s) 121
Hin1II CATG 5 cut(s) 160, 376, 433, 763, 955
HindIII AAGCTT 2 cut(s) 104, 275
HinfI GANTC 3 cut(s) 318, 667, 749
HpaII CCGG 2 cut(s) 642, 810
Hpy188I TCNGA 1 cut(s) 166
Hpy188III TCNNGA 2 cut(s) 9, 886
HpyAV CCTTC 4 cut(s) 71, 172, 779, 967
HpyCH4III ACNGT 2 cut(s) 123, 916
HpyCH4IV ACGT 1 cut(s) 597
HpyCH4V TGCA 4 cut(s) 170, 815, 827, 842
HpyF10VI GCNNNNNNNGC 6 cut(s) 214, 254, 510, 821, 824, 827
HpyF3I CTNAG 6 cut(s) 102, 309, 328, 366, 462, 489
HpySE526I ACGT 1 cut(s) 597
Hsp92II CATG 5 cut(s) 160, 376, 433, 763, 955
KpnI GGTACC 1 cut(s) 555
Kzo9I GATC 2 cut(s) 465, 712
LmnI GCTCC 3 cut(s) 380, 616, 680
Lsp1109I GCAGC 9 cut(s) 85, 247, 269, 781, 808, 811, 827, 830, 839
LweI GCATC 2 cut(s) 157, 916
MaeI CTAG 1 cut(s) 129
MaeII ACGT 1 cut(s) 597
MaeIII GTNAC 2 cut(s) 25, 425
MalI GATC 2 cut(s) 467, 714
MboI GATC 2 cut(s) 465, 712
MboII GAAGA 3 cut(s) 327, 410, 782
MflI RGATCY 1 cut(s) 465
MhlI GDGCHC 1 cut(s) 128
MluCI AATT 3 cut(s) 12, 32, 831
MnlI CCTC 5 cut(s) 16, 669, 840, 894, 955
MroXI GAANNNNTTC 2 cut(s) 729, 789
MseI TTAA 4 cut(s) 353, 579, 780, 834
MslI CAYNNNNRTG 1 cut(s) 758
MspA1I CMGCKG 2 cut(s) 260, 821
MspI CCGG 2 cut(s) 642, 810
MspR9I CCNGG 2 cut(s) 195, 654
Mva1269I GAATGC 1 cut(s) 248
MvaI CCWGG 2 cut(s) 195, 654
MwoI GCNNNNNNNGC 6 cut(s) 214, 254, 510, 821, 824, 827
NdeII GATC 2 cut(s) 465, 712
NlaIII CATG 5 cut(s) 160, 376, 433, 763, 955
NlaIV GGNNCC 4 cut(s) 120, 486, 553, 618
NmuCI GTSAC 1 cut(s) 25
NspI RCATGY 1 cut(s) 433
PaeR7I CTCGAG 1 cut(s) 7
PctI GAATGC 1 cut(s) 248
PdmI GAANNNNTTC 2 cut(s) 729, 789
PfeI GAWTC 3 cut(s) 318, 667, 749
PflMI CCANNNNNTGG 1 cut(s) 224
PkrI GCNGC 9 cut(s) 100, 259, 262, 771, 817, 820, 823, 826, 829
PpuMI RGGWCCY 2 cut(s) 485, 656
Psp5II RGGWCCY 2 cut(s) 485, 656
Psp6I CCWGG 2 cut(s) 193, 652
PspFI CCCAGC 3 cut(s) 361, 566, 860
PspGI CCWGG 2 cut(s) 193, 652
PspN4I GGNNCC 4 cut(s) 120, 486, 553, 618
PspPI GGNCC 2 cut(s) 485, 656
PspPPI RGGWCCY 2 cut(s) 485, 656
PstI CTGCAG 1 cut(s) 829
PstNI CAGNNNCTG 3 cut(s) 566, 821, 824
PsuI RGATCY 1 cut(s) 465
PvuII CAGCTG 2 cut(s) 260, 821
RsaI GTAC 4 cut(s) 307, 544, 553, 918
RsaNI GTAC 4 cut(s) 306, 543, 552, 917
RseI CAYNNNNRTG 1 cut(s) 758
SaqAI TTAA 4 cut(s) 353, 579, 780, 834
SatI GCNGC 9 cut(s) 99, 258, 261, 770, 816, 819, 822, 825, 828
Sau3AI GATC 2 cut(s) 465, 712
Sau96I GGNCC 2 cut(s) 485, 656
ScaI AGTACT 1 cut(s) 307
ScrFI CCNGG 2 cut(s) 195, 654
SduI GDGCHC 1 cut(s) 128
SfaNI GCATC 2 cut(s) 157, 916
SfcI CTRYAG 1 cut(s) 825
Sfr274I CTCGAG 1 cut(s) 7
SinI GGWCC 2 cut(s) 485, 656
SlaI CTCGAG 1 cut(s) 7
SmiMI CAYNNNNRTG 1 cut(s) 758
SmlI CTYRAG 2 cut(s) 7, 107
SmoI CTYRAG 2 cut(s) 7, 107
Sse9I AATT 3 cut(s) 12, 32, 831
SsiI CCGC 2 cut(s) 395, 944
SspMI CTAG 1 cut(s) 129
StyD4I CCNGG 2 cut(s) 193, 652
TaaI ACNGT 2 cut(s) 123, 916
TaiI ACGT 1 cut(s) 600
TaqI TCGA 4 cut(s) 8, 519, 924, 960
TasI AATT 3 cut(s) 12, 32, 831
TatI WGTACW 1 cut(s) 305
TfiI GAWTC 3 cut(s) 318, 667, 749
Tru1I TTAA 4 cut(s) 353, 579, 780, 834
Tru9I TTAA 4 cut(s) 353, 579, 780, 834
TscAI CASTG 2 cut(s) 238, 511
TseFI GTSAC 1 cut(s) 25
TseI GCWGC 9 cut(s) 98, 257, 260, 769, 815, 818, 821, 824, 827
Tsp45I GTSAC 1 cut(s) 25
TspDTI ATGAA 2 cut(s) 389, 762
TspRI CASTG 2 cut(s) 238, 511
Van91I CCANNNNNTGG 1 cut(s) 224
VpaK11BI GGWCC 2 cut(s) 485, 656
XceI RCATGY 1 cut(s) 433
XhoI CTCGAG 1 cut(s) 7
XmnI GAANNNNTTC 2 cut(s) 729, 789
XspI CTAG 1 cut(s) 129
ZrmI AGTACT 1 cut(s) 307
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.