Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0001773

Physical Location & Seq

Genomic Coordinates Reverse (-)

21167924 .. 21170549

Gene Structure 2626 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom04g19440.7

Sequence Viewer

CDS Protein Promoter (2k)

Length: 858 bp

ATGATGGAACCATGCTCTAGTGTCAAAGATAGGATCGGATATAGTATGATTCAAGATGCCGAGGAGAAAGGTCTCATTACGCCGGGCGAGAGTGTCCTGGTTGAGCCTACAAGTGGCAATACTGGCATAGGATTGGCATTTATGGCAGCCGCTAAGGGTTACAAACTAATAATCACCATGCCTGCTTCAACGAGTCTTGAAAGACGAACCATTCTTCTAGGATTTGGGGCTGAACTTGTCCTCACAGATCCAGCCAGAGGCATGAAGGGCGCTGTTCAGAAGGCTGAAGAGATAGTGGCAAAGACACCCAATGCTTATATGCTTCAGCAATTCGAAAACCCTGCGAACCCAAAGGTGCATTATGAAACTACTGGACCAGAAGTCTGGAAAGGCTCTGGTGGTAAAGTTGATGCCTTTGTGTCCGGGATAGGGACAGGAGGTACGATAACAGGTGTTGGGAAGTACCTCAAAGAACAGAATCCGGACATTAAGATCTATGGTGTAGAACCAGTTGAAAGCGCTGTTTTATCAGGAGGGAAACCCGGCCCTCACAAGATTCAAGGAATTGGTGCTGGCTTCATCCCTGGAGTTTTAGATGTCAACGTGATGGATGAAGTTATTCAAGTATCTAGTGAAGTGGCTATAGAAACTGCTAAGCTTCTTGCATTGACAGAAGGTTTGCTGGTTGGGATATCATCTGGTGCTGCTGCAGCAGCTGCAATCGAAATTGCAAAGAGGCCAGAGAATGCTGGAAAACTCATTGTTGCGGTCTTCCCCAGCTTCGGAGAGCGTTATCTGTCCTCCGTGTTGTTTGAATCTGTGAAGCGGGAGGCTGAGAGCATGGTTTTTGAGCCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00270 ko00920 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 map00270 map00920 map01100 map01110 map01120 map01130 map01200 map01230

Pfam Domains

Protein Families

PALP

Protein Analysis

286

Amino Acids

29.86

Weight (kDa)

5.11

Isoelectric Point (pI)

31.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001773)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22460 AT4G14880 AT4G14880 AT4G14880 AT4G14880 AT4G14880
fragaria_vesca	FvH4_4g15640 FvH4_4g15640 FvH4_4g15640 FvH4_4g15640 FvH4_4g15640 FvH4_4g15640 FvH4_4g15640 FvH4_6g03700 FvH4_6g03700 FvH4_6g03700 FvH4_6g03700 FvH4_6g03700
malus_domestica	MD04G1219000.v1.1 MD12G1236000.v1.1 MD13G1193400.v1.1 MD16G1194200.v1.1
prunus_persica	Prupe.1G014000_v2.0.a1 Prupe.6G338400_v2.0.a1 Prupe.6G338400_v2.0.a1
pyrus_communis	pycom04g19440 pycom12g21720 pycom13g16570
rosa_chinensis	RchiOBHm_Chr3g0452241 RchiOBHm_Chr4g0416171
rosa_laevigata	RLG00000008009 RLG00000025614
rosa_multiflora	Rmu_sc0001145.1_g000001 Rmu_sc0010928.1_g000004 Rmu_sc0031164.1_g000006 Rmu_sc0042623.1_g000001
rosa_roxburghii	Rroxscaffold_5G00360030 Rroxscaffold_6G00429370
rosa_rugosa	Rorug02G0639500 Rorug02G0639600 Rorug04G0139300 Rorug04G0139400 Rorug04G0139500
rosa_samantha	Rh3DG042600 Rh4BG199000
rosa_wichuraiana	Rw3G003170 Rw4G017040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	481
AciI	CCGC	3 cut(s)	150, 767, 826
AclWI	GGATC	2 cut(s)	41, 242
AcuI	CTGAAG	2 cut(s)	306, 308
AfaI	GTAC	2 cut(s)	442, 464
AfeI	AGCGCT	1 cut(s)	520
AfiI	CCNNNNNNNGG	4 cut(s)	113, 257, 429, 782
AgsI	TTSAA	7 cut(s)	53, 189, 200, 515, 560, 623, 815
AhdI	GACNNNNNGTC	1 cut(s)	380
AjnI	CCWGG	2 cut(s)	96, 583
AluBI	AGCT	3 cut(s)	658, 716, 780
AluI	AGCT	3 cut(s)	658, 716, 780
Alw26I	GTCTC	1 cut(s)	77
AlwI	GGATC	2 cut(s)	41, 242
AlwNI	CAGNNNCTG	1 cut(s)	716
Aor13HI	TCCGGA	1 cut(s)	481
Aor51HI	AGCGCT	1 cut(s)	520
AoxI	GGCC	2 cut(s)	544, 737
ApeKI	GCWGC	6 cut(s)	146, 704, 707, 710, 713, 716
ArsI	GACNNNNNNTTYG	2 cut(s)	661, 693
Asp700I	GAANNNNTTC	1 cut(s)	618
AspLEI	GCGC	2 cut(s)	272, 521
AspS9I	GGNCC	2 cut(s)	374, 545
AsuC2I	CCSGG	3 cut(s)	84, 424, 543
AsuHPI	GGTGA	1 cut(s)	166
AsuII	TTCGAA	1 cut(s)	333
AvaII	GGWCC	1 cut(s)	374
BanII	GRGCYC	1 cut(s)	855
BbsI	GAAGAC	1 cut(s)	763
BbvI	GCAGC	6 cut(s)	158, 691, 694, 703, 722, 725
BccI	CCATC	1 cut(s)	601
BcgI	CGANNNNNNTGC	2 cut(s)	323, 357
BciT130I	CCWGG	2 cut(s)	98, 585
BcnI	CCSGG	3 cut(s)	84, 424, 543
BcoDI	GTCTC	1 cut(s)	77
BfaI	CTAG	3 cut(s)	18, 218, 630
BfmI	CTRYAG	2 cut(s)	642, 708
BfoI	RGCGCY	2 cut(s)	273, 522
BglII	AGATCT	1 cut(s)	492
BisI	GCNGC	7 cut(s)	147, 150, 705, 708, 711, 714, 717
BlpI	GCTNAGC	1 cut(s)	654
BlsI	GCNGC	7 cut(s)	148, 151, 706, 709, 712, 715, 718
Bme1390I	CCNGG	5 cut(s)	84, 98, 424, 543, 585
Bme18I	GGWCC	1 cut(s)	374
BmeRI	GACNNNNNGTC	1 cut(s)	380
BmgT120I	GGNCC	2 cut(s)	374, 545
BmiI	GGNNCC	1 cut(s)	9
BmrFI	CCNGG	5 cut(s)	84, 98, 424, 543, 585
BmsI	GCATC	2 cut(s)	46, 400
BpiI	GAAGAC	1 cut(s)	763
BpmI	CTGGAG	1 cut(s)	606
Bpu10I	CCTNAGC	1 cut(s)	153
Bpu1102I	GCTNAGC	1 cut(s)	654
Bpu14I	TTCGAA	1 cut(s)	333
BpuMI	CCSGG	3 cut(s)	84, 424, 543
BsaI	GGTCTC	1 cut(s)	77
BsaJI	CCNNGG	2 cut(s)	60, 583
BsaWI	WCCGGW	1 cut(s)	481
Bsc4I	CCNNNNNNNGG	4 cut(s)	113, 257, 429, 782
Bse1I	ACTGG	3 cut(s)	127, 376, 509
BseAI	TCCGGA	1 cut(s)	481
BseBI	CCWGG	2 cut(s)	98, 585
BseDI	CCNNGG	2 cut(s)	60, 583
BseGI	GGATG	2 cut(s)	579, 616
BseLI	CCNNNNNNNGG	4 cut(s)	113, 257, 429, 782
BseMII	CTCAG	1 cut(s)	825
BseNI	ACTGG	3 cut(s)	127, 376, 509
BseRI	GAGGAG	1 cut(s)	77
BseXI	GCAGC	6 cut(s)	158, 691, 694, 703, 722, 725
BseYI	CCCAGC	1 cut(s)	776
BshFI	GGCC	2 cut(s)	546, 739
BsiSI	CCGG	4 cut(s)	83, 423, 482, 543
BslFI	GGGAC	1 cut(s)	445
BslI	CCNNNNNNNGG	4 cut(s)	113, 257, 429, 782
BsmAI	GTCTC	1 cut(s)	77
BsmFI	GGGAC	1 cut(s)	445
BsmI	GAATGC	1 cut(s)	751
BsnI	GGCC	2 cut(s)	546, 739
Bso31I	GGTCTC	1 cut(s)	77
Bsp119I	TTCGAA	1 cut(s)	333
Bsp1286I	GDGCHC	1 cut(s)	855
Bsp13I	TCCGGA	1 cut(s)	481
Bsp143I	GATC	3 cut(s)	33, 247, 492
Bsp1720I	GCTNAGC	1 cut(s)	654
BspACI	CCGC	3 cut(s)	150, 767, 826
BspANI	GGCC	2 cut(s)	546, 739
BspCNI	CTCAG	1 cut(s)	826
BspEI	TCCGGA	1 cut(s)	481
BspLI	GGNNCC	1 cut(s)	9
BspMAI	CTGCAG	1 cut(s)	712
BspPI	GGATC	2 cut(s)	41, 242
BspT104I	TTCGAA	1 cut(s)	333
BspTNI	GGTCTC	1 cut(s)	77
BsrI	ACTGG	3 cut(s)	127, 376, 509
BssECI	CCNNGG	2 cut(s)	60, 583
BssMI	GATC	3 cut(s)	33, 247, 492
Bst2UI	CCWGG	2 cut(s)	98, 585
Bst6I	CTCTTC	1 cut(s)	282
BstAPI	GCANNNNNTGC	1 cut(s)	716
BstBI	TTCGAA	1 cut(s)	333
BstC8I	GCNNGC	2 cut(s)	183, 574
BstDEI	CTNAG	3 cut(s)	153, 654, 834
BstF5I	GGATG	2 cut(s)	579, 616
BstH2I	RGCGCY	2 cut(s)	273, 522
BstHHI	GCGC	2 cut(s)	272, 521
BstKTI	GATC	3 cut(s)	36, 250, 495
BstMAI	GTCTC	1 cut(s)	77
BstMBI	GATC	3 cut(s)	33, 247, 492
BstMWI	GCNNNNNNNGC	6 cut(s)	123, 143, 267, 710, 713, 716
BstNI	CCWGG	2 cut(s)	98, 585
BstSCI	CCNGG	5 cut(s)	82, 96, 422, 541, 583
BstSFI	CTRYAG	2 cut(s)	642, 708
BstV1I	GCAGC	6 cut(s)	158, 691, 694, 703, 722, 725
BstV2I	GAAGAC	1 cut(s)	763
BstX2I	RGATCY	2 cut(s)	247, 492
BstXI	CCANNNNNNTGG	1 cut(s)	384
BstYI	RGATCY	2 cut(s)	247, 492
BsuRI	GGCC	2 cut(s)	546, 739
BtsCI	GGATG	2 cut(s)	579, 616
Cac8I	GCNNGC	2 cut(s)	183, 574
CaiI	CAGNNNCTG	1 cut(s)	716
CfoI	GCGC	2 cut(s)	272, 521
Cfr13I	GGNCC	2 cut(s)	374, 545
Csp6I	GTAC	2 cut(s)	441, 463
CviAII	CATG	4 cut(s)	12, 178, 262, 841
CviQI	GTAC	2 cut(s)	441, 463
DdeI	CTNAG	3 cut(s)	153, 654, 834
DpnI	GATC	3 cut(s)	35, 249, 494
DpnII	GATC	3 cut(s)	33, 247, 492
DriI	GACNNNNNGTC	1 cut(s)	380
Eam1104I	CTCTTC	1 cut(s)	282
Eam1105I	GACNNNNNGTC	1 cut(s)	380
EarI	CTCTTC	1 cut(s)	282
Eco24I	GRGCYC	1 cut(s)	855
Eco31I	GGTCTC	1 cut(s)	77
Eco32I	GATATC	1 cut(s)	693
Eco47I	GGWCC	1 cut(s)	374
Eco47III	AGCGCT	1 cut(s)	520
Eco57I	CTGAAG	2 cut(s)	306, 308
EcoRII	CCWGG	2 cut(s)	96, 583
EcoRV	GATATC	1 cut(s)	693
EcoT38I	GRGCYC	1 cut(s)	855
FaeI	CATG	4 cut(s)	15, 181, 265, 844
FaqI	GGGAC	1 cut(s)	445
FatI	CATG	4 cut(s)	11, 177, 261, 840
FauI	CCCGC	1 cut(s)	819
Fnu4HI	GCNGC	7 cut(s)	147, 150, 705, 708, 711, 714, 717
FokI	GGATG	2 cut(s)	566, 623
FriOI	GRGCYC	1 cut(s)	855
Fsp4HI	GCNGC	7 cut(s)	147, 150, 705, 708, 711, 714, 717
FspBI	CTAG	3 cut(s)	18, 218, 630
GlaI	GCGC	2 cut(s)	271, 520
GluI	GCNGC	7 cut(s)	147, 150, 705, 708, 711, 714, 717
GsaI	CCCAGC	1 cut(s)	780
GsuI	CTGGAG	1 cut(s)	606
HaeII	RGCGCY	2 cut(s)	273, 522
HaeIII	GGCC	2 cut(s)	546, 739
HapII	CCGG	4 cut(s)	83, 423, 482, 543
HhaI	GCGC	2 cut(s)	272, 521
Hin1II	CATG	4 cut(s)	15, 181, 265, 844
Hin6I	GCGC	2 cut(s)	270, 519
HinP1I	GCGC	2 cut(s)	270, 519
HincII	GTYRAC	1 cut(s)	601
HindII	GTYRAC	1 cut(s)	601
HindIII	AAGCTT	1 cut(s)	656
HinfI	GANTC	5 cut(s)	49, 193, 478, 556, 815
HpaII	CCGG	4 cut(s)	83, 423, 482, 543
HphI	GGTGA	1 cut(s)	166
Hpy166II	GTNNAC	1 cut(s)	601
Hpy188I	TCNGA	3 cut(s)	38, 279, 785
Hpy188III	TCNNGA	5 cut(s)	53, 197, 385, 482, 531
Hpy8I	GTNNAC	1 cut(s)	601
HpyAV	CCTTC	3 cut(s)	259, 274, 668
HpyCH4IV	ACGT	1 cut(s)	603
HpyCH4V	TGCA	5 cut(s)	358, 665, 710, 719, 731
HpyF10VI	GCNNNNNNNGC	6 cut(s)	123, 143, 267, 710, 713, 716
HpyF3I	CTNAG	3 cut(s)	153, 654, 834
HpySE526I	ACGT	1 cut(s)	603
Hsp92II	CATG	4 cut(s)	15, 181, 265, 844
HspAI	GCGC	2 cut(s)	270, 519
Kpn2I	TCCGGA	1 cut(s)	481
Kzo9I	GATC	3 cut(s)	33, 247, 492
Lsp1109I	GCAGC	6 cut(s)	158, 691, 694, 703, 722, 725
LweI	GCATC	2 cut(s)	46, 400
MaeI	CTAG	3 cut(s)	18, 218, 630
MaeII	ACGT	1 cut(s)	603
MaeIII	GTNAC	1 cut(s)	158
MalI	GATC	3 cut(s)	35, 249, 494
MboI	GATC	3 cut(s)	33, 247, 492
MboII	GAAGA	3 cut(s)	206, 299, 763
MflI	RGATCY	2 cut(s)	247, 492
MhlI	GDGCHC	1 cut(s)	855
MluCI	AATT	3 cut(s)	329, 564, 726
MlyI	GAGTC	1 cut(s)	202
MroI	TCCGGA	1 cut(s)	481
MroXI	GAANNNNTTC	1 cut(s)	618
MseI	TTAA	1 cut(s)	489
MspA1I	CMGCKG	1 cut(s)	716
MspI	CCGG	4 cut(s)	83, 423, 482, 543
MspR9I	CCNGG	5 cut(s)	84, 98, 424, 543, 585
Mva1269I	GAATGC	1 cut(s)	751
MvaI	CCWGG	2 cut(s)	98, 585
MwoI	GCNNNNNNNGC	6 cut(s)	123, 143, 267, 710, 713, 716
NciI	CCSGG	3 cut(s)	84, 424, 543
NdeII	GATC	3 cut(s)	33, 247, 492
NlaIII	CATG	4 cut(s)	15, 181, 265, 844
NlaIV	GGNNCC	1 cut(s)	9
NmeAIII	GCCGAG	1 cut(s)	85
NspV	TTCGAA	1 cut(s)	333
PctI	GAATGC	1 cut(s)	751
PdmI	GAANNNNTTC	1 cut(s)	618
PfeI	GAWTC	4 cut(s)	49, 478, 556, 815
PfoI	TCCNGGA	1 cut(s)	422
PkrI	GCNGC	7 cut(s)	148, 151, 706, 709, 712, 715, 718
PleI	GAGTC	1 cut(s)	201
PpsI	GAGTC	1 cut(s)	201
Psp6I	CCWGG	2 cut(s)	96, 583
PspFI	CCCAGC	1 cut(s)	776
PspGI	CCWGG	2 cut(s)	96, 583
PspN4I	GGNNCC	1 cut(s)	9
PspPI	GGNCC	2 cut(s)	374, 545
PstI	CTGCAG	1 cut(s)	712
PstNI	CAGNNNCTG	1 cut(s)	716
PsuI	RGATCY	2 cut(s)	247, 492
PvuII	CAGCTG	1 cut(s)	716
RsaI	GTAC	2 cut(s)	442, 464
RsaNI	GTAC	2 cut(s)	441, 463
SaqAI	TTAA	1 cut(s)	489
SatI	GCNGC	7 cut(s)	147, 150, 705, 708, 711, 714, 717
Sau3AI	GATC	3 cut(s)	33, 247, 492
Sau96I	GGNCC	2 cut(s)	374, 545
SchI	GAGTC	1 cut(s)	202
ScrFI	CCNGG	5 cut(s)	84, 98, 424, 543, 585
SduI	GDGCHC	1 cut(s)	855
SfaNI	GCATC	2 cut(s)	46, 400
SfcI	CTRYAG	2 cut(s)	642, 708
SfuI	TTCGAA	1 cut(s)	333
SinI	GGWCC	1 cut(s)	374
Sse9I	AATT	3 cut(s)	329, 564, 726
SsiI	CCGC	3 cut(s)	150, 767, 826
SspMI	CTAG	3 cut(s)	18, 218, 630
StyD4I	CCNGG	5 cut(s)	82, 96, 422, 541, 583
TaiI	ACGT	1 cut(s)	606
TaqI	TCGA	2 cut(s)	333, 723
TasI	AATT	3 cut(s)	329, 564, 726
TauI	GCSGC	1 cut(s)	152
TfiI	GAWTC	4 cut(s)	49, 478, 556, 815
Tru1I	TTAA	1 cut(s)	489
Tru9I	TTAA	1 cut(s)	489
TseI	GCWGC	6 cut(s)	146, 704, 707, 710, 713, 716
TspDTI	ATGAA	4 cut(s)	278, 378, 568, 627
TspGWI	ACGGA	1 cut(s)	793
VpaK11BI	GGWCC	1 cut(s)	374
XmnI	GAANNNNTTC	1 cut(s)	618
XspI	CTAG	3 cut(s)	18, 218, 630

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.