Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0001773

Physical Location & Seq

Genomic Coordinates Reverse (-)

22843966 .. 22846543

Gene Structure 2578 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom12g21720.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 792 bp

ATGATGGAGCCATGCTCTAGTGTCAAAGATAGGATCGGATATAGTATGATTAAAGATGCTGAGGAGAAAGGTCTCATTACGCCCGGCGAGAGTGTCCTGATTGAGCCTACAAGTGGCAATACTGGCATAGGATTGGCATTCATGGCAGCTGCTAAGGGTTACAAACTAATAATCACCATGCCTGCTTCAATGAGTCTTGAAAGAAGGACGATTCTTCGAGGATTTGGGGCAGAACTTGTCCTCACAGATCCAGCCAGAGGCATGAAAGGGGCTGTTCAAAAGGCTGAAGAAATAGTGGCAAAGACACCCAATGCTTATATGCTTCAGCAATTCGAAAACCCTGCCAACCCAAAGGTGCATTATGAAACTACTGGACCAGAAATCTGGAAAGGCTCTGGTGGTAAAGTTGATGCCTTTGTGTCTGGGATAGGGACAGGAGAACCAGTTGAAAGTGCTGTGTTGTCTGGAGGGAAGCCCGGCCCTCATAAGATTCAAGGAATTGGTGCTGGCTTCATCCCTGGAGTTTTAGATGTCAACCTGATTGACGAAGTTATTCAAGTAACAAGTGAAGTGGCTATAGAAACTGCTAAGCTTCTTGCATTGAAAGAAGGTTTGCTGGTAGGAATATCATCTGGTGCTGCTGCTGCAGCGGCAATTGAAATTGCAAAGAGGCCAGAAAATGCTGGAAAGCTCATTGTTGTGGTCTTCCCCAGCTTCGGAGAGCGTTATCTATCCTCCGTGTTGTTTGAATCTGTGAAGCGGGAGGCCGAGAGCATGGTGTTTGAGCCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00270 ko00920 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 map00270 map00920 map01100 map01110 map01120 map01130 map01200 map01230

Pfam Domains

Protein Families

PALP

Protein Analysis

264

Amino Acids

27.65

Weight (kDa)

5.31

Isoelectric Point (pI)

35.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001773)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22460 AT4G14880 AT4G14880 AT4G14880 AT4G14880 AT4G14880
fragaria_vesca	FvH4_4g15640 FvH4_4g15640 FvH4_4g15640 FvH4_4g15640 FvH4_4g15640 FvH4_4g15640 FvH4_4g15640 FvH4_6g03700 FvH4_6g03700 FvH4_6g03700 FvH4_6g03700 FvH4_6g03700
malus_domestica	MD04G1219000.v1.1 MD12G1236000.v1.1 MD13G1193400.v1.1 MD16G1194200.v1.1
prunus_persica	Prupe.1G014000_v2.0.a1 Prupe.6G338400_v2.0.a1 Prupe.6G338400_v2.0.a1
pyrus_communis	pycom04g19440 pycom12g21720 pycom13g16570
rosa_chinensis	RchiOBHm_Chr3g0452241 RchiOBHm_Chr4g0416171
rosa_laevigata	RLG00000008009 RLG00000025614
rosa_multiflora	Rmu_sc0001145.1_g000001 Rmu_sc0010928.1_g000004 Rmu_sc0031164.1_g000006 Rmu_sc0042623.1_g000001
rosa_roxburghii	Rroxscaffold_5G00360030 Rroxscaffold_6G00429370
rosa_rugosa	Rorug02G0639500 Rorug02G0639600 Rorug04G0139300 Rorug04G0139400 Rorug04G0139500
rosa_samantha	Rh3DG042600 Rh4BG199000
rosa_wichuraiana	Rw3G003170 Rw4G017040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	650, 760
AclWI	GGATC	2 cut(s)	41, 242
AcuI	CTGAAG	2 cut(s)	306, 308
AfiI	CCNNNNNNNGG	3 cut(s)	113, 257, 716
AgsI	TTSAA	9 cut(s)	189, 200, 278, 449, 494, 557, 604, 659, 749
AjnI	CCWGG	1 cut(s)	517
AluBI	AGCT	4 cut(s)	149, 592, 691, 714
AluI	AGCT	4 cut(s)	149, 592, 691, 714
Alw26I	GTCTC	1 cut(s)	77
AlwI	GGATC	2 cut(s)	41, 242
AoxI	GGCC	3 cut(s)	478, 671, 765
ApeKI	GCWGC	6 cut(s)	146, 149, 638, 641, 644, 647
Asp700I	GAANNNNTTC	1 cut(s)	552
AspS9I	GGNCC	2 cut(s)	374, 479
AsuC2I	CCSGG	2 cut(s)	84, 477
AsuHPI	GGTGA	1 cut(s)	166
AsuII	TTCGAA	1 cut(s)	333
AvaII	GGWCC	1 cut(s)	374
BanII	GRGCYC	1 cut(s)	789
BbsI	GAAGAC	1 cut(s)	697
BbvCI	CCTCAGC	1 cut(s)	60
BbvI	GCAGC	6 cut(s)	136, 158, 625, 628, 631, 659
BcgI	CGANNNNNNTGC	2 cut(s)	323, 357
BciT130I	CCWGG	1 cut(s)	519
BcnI	CCSGG	2 cut(s)	84, 477
BcoDI	GTCTC	1 cut(s)	77
BfaI	CTAG	1 cut(s)	18
BfmI	CTRYAG	2 cut(s)	576, 645
BisI	GCNGC	7 cut(s)	147, 150, 639, 642, 645, 648, 651
BlpI	GCTNAGC	1 cut(s)	588
BlsI	GCNGC	7 cut(s)	148, 151, 640, 643, 646, 649, 652
Bme1390I	CCNGG	3 cut(s)	84, 477, 519
Bme18I	GGWCC	1 cut(s)	374
BmgT120I	GGNCC	2 cut(s)	374, 479
BmiI	GGNNCC	1 cut(s)	9
BmrFI	CCNGG	3 cut(s)	84, 477, 519
BmsI	GCATC	2 cut(s)	46, 400
BpiI	GAAGAC	1 cut(s)	697
BplI	GAGNNNNNCTC	1 cut(s)	31
BpmI	CTGGAG	2 cut(s)	486, 540
Bpu10I	CCTNAGC	2 cut(s)	60, 153
Bpu1102I	GCTNAGC	1 cut(s)	588
Bpu14I	TTCGAA	1 cut(s)	333
BpuMI	CCSGG	2 cut(s)	84, 477
BsaI	GGTCTC	1 cut(s)	77
BsaJI	CCNNGG	1 cut(s)	517
BsaXI	ACNNNNNCTCC	2 cut(s)	429, 459
Bsc4I	CCNNNNNNNGG	3 cut(s)	113, 257, 716
Bse1I	ACTGG	3 cut(s)	127, 376, 443
BseBI	CCWGG	1 cut(s)	519
BseDI	CCNNGG	1 cut(s)	517
BseGI	GGATG	1 cut(s)	513
BseLI	CCNNNNNNNGG	3 cut(s)	113, 257, 716
BseMII	CTCAG	1 cut(s)	51
BseNI	ACTGG	3 cut(s)	127, 376, 443
BseRI	GAGGAG	1 cut(s)	77
BseXI	GCAGC	6 cut(s)	136, 158, 625, 628, 631, 659
BseYI	CCCAGC	1 cut(s)	710
BshFI	GGCC	3 cut(s)	480, 673, 767
BsiSI	CCGG	2 cut(s)	84, 477
BslFI	GGGAC	1 cut(s)	445
BslI	CCNNNNNNNGG	3 cut(s)	113, 257, 716
BsmAI	GTCTC	1 cut(s)	77
BsmFI	GGGAC	1 cut(s)	445
BsmI	GAATGC	1 cut(s)	137
BsnI	GGCC	3 cut(s)	480, 673, 767
Bso31I	GGTCTC	1 cut(s)	77
Bsp119I	TTCGAA	1 cut(s)	333
Bsp1286I	GDGCHC	1 cut(s)	789
Bsp143I	GATC	2 cut(s)	33, 247
Bsp1720I	GCTNAGC	1 cut(s)	588
BspACI	CCGC	2 cut(s)	650, 760
BspANI	GGCC	3 cut(s)	480, 673, 767
BspCNI	CTCAG	1 cut(s)	52
BspLI	GGNNCC	1 cut(s)	9
BspMAI	CTGCAG	1 cut(s)	649
BspPI	GGATC	2 cut(s)	41, 242
BspT104I	TTCGAA	1 cut(s)	333
BspTNI	GGTCTC	1 cut(s)	77
BsrI	ACTGG	3 cut(s)	127, 376, 443
BssECI	CCNNGG	1 cut(s)	517
BssMI	GATC	2 cut(s)	33, 247
Bst2UI	CCWGG	1 cut(s)	519
BstBI	TTCGAA	1 cut(s)	333
BstC8I	GCNNGC	2 cut(s)	183, 508
BstDEI	CTNAG	3 cut(s)	60, 153, 588
BstF5I	GGATG	1 cut(s)	513
BstKTI	GATC	2 cut(s)	36, 250
BstMAI	GTCTC	1 cut(s)	77
BstMBI	GATC	2 cut(s)	33, 247
BstMWI	GCNNNNNNNGC	5 cut(s)	123, 143, 644, 647, 650
BstNI	CCWGG	1 cut(s)	519
BstSCI	CCNGG	3 cut(s)	82, 475, 517
BstSFI	CTRYAG	2 cut(s)	576, 645
BstV1I	GCAGC	6 cut(s)	136, 158, 625, 628, 631, 659
BstV2I	GAAGAC	1 cut(s)	697
BstX2I	RGATCY	1 cut(s)	247
BstXI	CCANNNNNNTGG	1 cut(s)	384
BstYI	RGATCY	1 cut(s)	247
BsuRI	GGCC	3 cut(s)	480, 673, 767
BtsCI	GGATG	1 cut(s)	513
Cac8I	GCNNGC	2 cut(s)	183, 508
Cfr13I	GGNCC	2 cut(s)	374, 479
CspCI	CAANNNNNGTGG	2 cut(s)	552, 587
CviAII	CATG	5 cut(s)	12, 142, 178, 262, 775
DdeI	CTNAG	3 cut(s)	60, 153, 588
DpnI	GATC	2 cut(s)	35, 249
DpnII	GATC	2 cut(s)	33, 247
Eco24I	GRGCYC	1 cut(s)	789
Eco31I	GGTCTC	1 cut(s)	77
Eco47I	GGWCC	1 cut(s)	374
Eco57I	CTGAAG	2 cut(s)	306, 308
EcoRII	CCWGG	1 cut(s)	517
EcoT38I	GRGCYC	1 cut(s)	789
FaeI	CATG	5 cut(s)	15, 145, 181, 265, 778
FaqI	GGGAC	1 cut(s)	445
FatI	CATG	5 cut(s)	11, 141, 177, 261, 774
FauI	CCCGC	1 cut(s)	753
Fnu4HI	GCNGC	7 cut(s)	147, 150, 639, 642, 645, 648, 651
FokI	GGATG	1 cut(s)	500
FriOI	GRGCYC	1 cut(s)	789
Fsp4HI	GCNGC	7 cut(s)	147, 150, 639, 642, 645, 648, 651
FspBI	CTAG	1 cut(s)	18
GluI	GCNGC	7 cut(s)	147, 150, 639, 642, 645, 648, 651
GsaI	CCCAGC	1 cut(s)	714
GsuI	CTGGAG	2 cut(s)	486, 540
HaeIII	GGCC	3 cut(s)	480, 673, 767
HapII	CCGG	2 cut(s)	84, 477
Hin1II	CATG	5 cut(s)	15, 145, 181, 265, 778
HincII	GTYRAC	1 cut(s)	535
HindII	GTYRAC	1 cut(s)	535
HindIII	AAGCTT	1 cut(s)	590
HinfI	GANTC	4 cut(s)	193, 211, 490, 749
HpaII	CCGG	2 cut(s)	84, 477
HphI	GGTGA	1 cut(s)	166
Hpy166II	GTNNAC	1 cut(s)	535
Hpy188I	TCNGA	2 cut(s)	38, 719
Hpy188III	TCNNGA	4 cut(s)	97, 197, 385, 465
Hpy8I	GTNNAC	1 cut(s)	535
HpyAV	CCTTC	2 cut(s)	198, 602
HpyCH4V	TGCA	4 cut(s)	358, 599, 647, 665
HpyF10VI	GCNNNNNNNGC	5 cut(s)	123, 143, 644, 647, 650
HpyF3I	CTNAG	3 cut(s)	60, 153, 588
Hsp92II	CATG	5 cut(s)	15, 145, 181, 265, 778
Kzo9I	GATC	2 cut(s)	33, 247
LmnI	GCTCC	1 cut(s)	7
Lsp1109I	GCAGC	6 cut(s)	136, 158, 625, 628, 631, 659
LweI	GCATC	2 cut(s)	46, 400
MaeI	CTAG	1 cut(s)	18
MaeIII	GTNAC	2 cut(s)	158, 559
MalI	GATC	2 cut(s)	35, 249
MboI	GATC	2 cut(s)	33, 247
MboII	GAAGA	3 cut(s)	206, 299, 697
MfeI	CAATTG	1 cut(s)	654
MflI	RGATCY	1 cut(s)	247
MhlI	GDGCHC	1 cut(s)	789
MluCI	AATT	4 cut(s)	329, 498, 654, 660
MlyI	GAGTC	1 cut(s)	202
MnlI	CCTC	9 cut(s)	55, 212, 251, 251, 461, 492, 663, 745, 757
MroXI	GAANNNNTTC	1 cut(s)	552
MseI	TTAA	1 cut(s)	51
MslI	CAYNNNNRTG	1 cut(s)	698
MspA1I	CMGCKG	2 cut(s)	149, 650
MspI	CCGG	2 cut(s)	84, 477
MspR9I	CCNGG	3 cut(s)	84, 477, 519
MunI	CAATTG	1 cut(s)	654
Mva1269I	GAATGC	1 cut(s)	137
MvaI	CCWGG	1 cut(s)	519
MwoI	GCNNNNNNNGC	5 cut(s)	123, 143, 644, 647, 650
NciI	CCSGG	2 cut(s)	84, 477
NdeII	GATC	2 cut(s)	33, 247
NlaIII	CATG	5 cut(s)	15, 145, 181, 265, 778
NlaIV	GGNNCC	1 cut(s)	9
NspV	TTCGAA	1 cut(s)	333
PctI	GAATGC	1 cut(s)	137
PdmI	GAANNNNTTC	1 cut(s)	552
PfeI	GAWTC	3 cut(s)	211, 490, 749
PkrI	GCNGC	7 cut(s)	148, 151, 640, 643, 646, 649, 652
PleI	GAGTC	1 cut(s)	201
PpsI	GAGTC	1 cut(s)	201
Psp6I	CCWGG	1 cut(s)	517
PspFI	CCCAGC	1 cut(s)	710
PspGI	CCWGG	1 cut(s)	517
PspN4I	GGNNCC	1 cut(s)	9
PspPI	GGNCC	2 cut(s)	374, 479
PstI	CTGCAG	1 cut(s)	649
PsuI	RGATCY	1 cut(s)	247
PvuII	CAGCTG	1 cut(s)	149
RseI	CAYNNNNRTG	1 cut(s)	698
SaqAI	TTAA	1 cut(s)	51
SatI	GCNGC	7 cut(s)	147, 150, 639, 642, 645, 648, 651
Sau3AI	GATC	2 cut(s)	33, 247
Sau96I	GGNCC	2 cut(s)	374, 479
SchI	GAGTC	1 cut(s)	202
ScrFI	CCNGG	3 cut(s)	84, 477, 519
SduI	GDGCHC	1 cut(s)	789
SetI	ASST	8 cut(s)	73, 151, 357, 540, 594, 613, 693, 716
SfaNI	GCATC	2 cut(s)	46, 400
SfcI	CTRYAG	2 cut(s)	576, 645
SfuI	TTCGAA	1 cut(s)	333
SinI	GGWCC	1 cut(s)	374
SmiMI	CAYNNNNRTG	1 cut(s)	698
Sse9I	AATT	4 cut(s)	329, 498, 654, 660
SsiI	CCGC	2 cut(s)	650, 760
SspMI	CTAG	1 cut(s)	18
StyD4I	CCNGG	3 cut(s)	82, 475, 517
TaqI	TCGA	2 cut(s)	217, 333
TasI	AATT	4 cut(s)	329, 498, 654, 660
TauI	GCSGC	1 cut(s)	653
TfiI	GAWTC	3 cut(s)	211, 490, 749
Tru1I	TTAA	1 cut(s)	51
Tru9I	TTAA	1 cut(s)	51
TseI	GCWGC	6 cut(s)	146, 149, 638, 641, 644, 647
TspDTI	ATGAA	4 cut(s)	130, 278, 378, 502
TspGWI	ACGGA	1 cut(s)	727
VpaK11BI	GGWCC	1 cut(s)	374
XmnI	GAANNNNTTC	1 cut(s)	552
XspI	CTAG	1 cut(s)	18

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.