Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0006285

Physical Location & Seq

Genomic Coordinates Reverse (-)

8017654 .. 8019552

Gene Structure 1899 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G22670.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1689 bp

ATGCTCACTAAGCTTAGGATTAGTAAGCTTGTTTCGTATACTTTACCTCGGAGAATCTTCCAACGGAGGTTTCTGGTAACGAATAACACTGCAGAGGAGTCGCCGATTGTTGCCGCAGAGTCACCGGAGCTACCGTCTTGGATTAAAGACTTTCTATCAAACAAGCCTTCTTCTTCATCGAGTTCGGTTTCCAAAGATGATGAAGATTTTGTTATCCCTTCTTTGGCGAATTGGGTCGAGAGCCAGAAGTTTAGTCGTCAACAAGTCTCAGAGGGAAATGTAGTGAAGAAACCAGTGGAAGATATTGATAAAGTTTGCGACTTTTTGAATAAGAAGGACACGTCTCATGAGGATGTTGTTAAAGAGTTGAGTAAATGCGATGTGGTGGTTACAGAGAGTTTGGTTTTGCAAGTTCTAAGAAGGTTTAGTAATGGTTGGAATCAAGCTTACGGGTTTTTCATTTGGGCAAATTCACAAACAGGTTATGTGCATTCAGGTCATACTTATAATGCAATGGTTGATGTGTTGGGGAAATGTAGGAATTTTGATTTGATGTGGGAATTAGTCAATGAGATGAACAAGAATGAAGAATCTAAGCTTGTTACGCTTGATACGATGAGTAAGGTTATGAGGAGATTGGCCAAGTCAGGGAAATATAATAAAGCTGTTGATGCTTTTTTAGAGATGGAGAAGAGTTATGGTGTGAAAACAGATACTATTGCTATGAACAGTTTGATGGATGCACTTGTGAAAGAGAATAGTATAGAGCATGCTCATGAAGTTTTTCTGAAGCTTTTCGATACAATCAAGCCGGATGCGCGGACATTCAACATTTTGATTCACGGTTTTTGTAAAGCTCGGAAATTTGATGATGCTAGAGCGATGATGGATTTGATGAAGGTTACTGAGTTCACTCCTGATGTTGTTACTTACACTAGCTTTGTGGAAGCTTATTGCAAGGAAGGGGATTTTAGGAGGGTTAATGAAATGTTGGAAGAGATGCGAGAGAATGGGTGTAATCCTAATGTTGTGACTTATACTATTGTGATGCATTCTTTGGGTAAATCTAAACAAGTAGCTGAAGCTTTAGGAGTGTATGAGAAGATGAAAGAAGATGGTTGTGTTCCTGATGCTAAGTTTTATAGCTCATTGATACATATTTTGTCGAAGACTGGTAGGTTTAAGGATGCAGCTGAGATATTTGAGGACATGACGAATCAAGGAGTTCGTCGTGATGTTTTAGTCTACAATACCATGATTTCCGCTGCGCTTCATCACTCACGAGATGAGATGGCTCTACGTTTGCTTAAAAGGATGGAGGATGAGGAGGGGGAATCATGTAGTCCAAACGTTGAGACTTATGCTCCATTGTTGAAGATGTGTTGCCATAAGAAGAAAATGAAGCTACTTGGAATATTATTGCATCACATGGTGAAAAACGATGTTAGTATCGATGTTTCGACATATATTCTTCTCATTAGAGGGTTATGTATGAGCGGGAAAGTTGAAGAAGCTTGCTTGTTCTTTGAGGAAGCAGTACGAAAAGGAATGGTTCCTAGAGATAGCACTTGCAAAATGTTGGTAGATGAGCTTGAGAAGAAAAATATGGCAGAAGCAAAACTCAAGATTCAGAGTTTGGTTCAATCGAAAACAATGATTGATTCTCACAGTCCTTTATCTGTTTCGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

562

Amino Acids

64.01

Weight (kDa)

6.56

Isoelectric Point (pI)

43.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_long	PF17177	224 - 349	3.2e-06	Pentacotripeptide-repeat region of PRORP
PPR_2	PF13041	238 - 285	1e-09	PPR repeat family
PPR_1	PF12854	269 - 300	1e-10	PPR repeat
PPR_2	PF13041	271 - 315	3.5e-11	PPR repeat family
PPR_3	PF13812	299 - 355	4.6e-13	Pentatricopeptide repeat domain
PPR_1	PF12854	304 - 335	3.6e-07	PPR repeat
PPR_2	PF13041	306 - 354	4.6e-16	PPR repeat family
PPR	PF01535	309 - 339	2.1e-07	PPR repeat
PPR_1	PF12854	337 - 370	5.1e-07	PPR repeat
PPR_2	PF13041	341 - 386	2.1e-11	PPR repeat family
PPR	PF01535	344 - 374	1.3e-06	PPR repeat
TPR_24	PF23276	346 - 438	8e-06	Fungal tetratrico peptide repeats
PPR_long	PF17177	350 - 526	5.8e-13	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	400 - 461	9.5e-10	Pentatricopeptide repeat domain
PPR_2	PF13041	412 - 463	7.5e-08	PPR repeat family
PPR_2	PF13041	449 - 497	3.3e-08	PPR repeat family
PPR_1	PF12854	482 - 511	7.4e-06	PPR repeat
PPR_2	PF13041	485 - 531	6.4e-06	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0006285)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22670
fragaria_vesca	FvH4_4g00721
malus_domestica	MD13G1197300.v1.1
prunus_persica	Prupe.1G018400_v2.0.a1
pyrus_communis	pycom13g17020
rosa_chinensis	RchiOBHm_Chr1g0322101 RchiOBHm_Chr4g0386451
rosa_laevigata	RLG00000010131 RLG00000010157 RLG00000010161
rosa_multiflora	Rmu_co8274927.1_g000001 Rmu_sc0001942.1_g000008 Rmu_sc0001942.1_g000027 Rmu_sc0001942.1_g000051 Rmu_sc0002785.1_g000008 Rmu_sc0003786.1_g000023 Rmu_sc0006648.1_g000016 Rmu_sc0036937.1_g000001 Rmu_ssc0000272.1_g000008 Rmu_ssc0000272.1_g000009
rosa_roxburghii	Rroxscaffold_5G00333960 Rroxscaffold_6G00392780
rosa_samantha	Rh1AG049600 Rh4BG009300 Rh4CG014300 Rh4DG010100
rosa_wichuraiana	Rw4G000030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	507
AccBSI	CCGCTC	1 cut(s)	1497
AccI	GTMKAC	2 cut(s)	38, 1245
AccII	CGCG	1 cut(s)	820
AciI	CCGC	4 cut(s)	114, 820, 1263, 1497
AclI	AACGTT	1 cut(s)	1350
AcoI	YGGCCR	1 cut(s)	639
AcsI	RAATTY	3 cut(s)	469, 541, 863
AcuI	CTGAAG	2 cut(s)	809, 1101
AdeI	CACNNNGTG	1 cut(s)	1432
AfaI	GTAC	1 cut(s)	1539
AfiI	CCNNNNNNNGG	2 cut(s)	223, 648
AflIII	ACRYGT	1 cut(s)	339
AgsI	TTSAA	5 cut(s)	328, 829, 1375, 1508, 1643
AjiI	CACGTC	1 cut(s)	342
AjuI	GAANNNNNNNTTGG	2 cut(s)	54, 86
Alw26I	GTCTC	3 cut(s)	271, 348, 1349
AoxI	GGCC	1 cut(s)	639
ApeKI	GCWGC	2 cut(s)	1190, 1265
ApoI	RAATTY	3 cut(s)	469, 541, 863
Asp700I	GAANNNNTTC	2 cut(s)	783, 794
AspLEI	GCGC	2 cut(s)	820, 1270
AsuHPI	GGTGA	2 cut(s)	114, 1444
BalI	TGGCCA	1 cut(s)	641
BauI	CACGAG	1 cut(s)	1281
BbsI	GAAGAC	1 cut(s)	1175
BbvI	GCAGC	2 cut(s)	1202, 1252
BccI	CCATC	6 cut(s)	679, 730, 880, 1109, 1285, 1309
BcgI	CGANNNNNNTGC	2 cut(s)	81, 115
BcoDI	GTCTC	3 cut(s)	271, 348, 1349
BfaI	CTAG	3 cut(s)	876, 936, 1557
BfmI	CTRYAG	1 cut(s)	90
BisI	GCNGC	3 cut(s)	114, 1191, 1266
BlsI	GCNGC	3 cut(s)	115, 1192, 1267
BmgBI	CACGTC	1 cut(s)	342
BmiI	GGNNCC	1 cut(s)	1554
BmsI	GCATC	9 cut(s)	661, 730, 805, 862, 990, 1038, 1120, 1177, 1432
BpiI	GAAGAC	1 cut(s)	1175
Bpu10I	CCTNAGC	1 cut(s)	14
BpuEI	CTTGAG	2 cut(s)	1607, 1613
Bsa29I	ATCGAT	1 cut(s)	1452
BsaJI	CCNNGG	1 cut(s)	47
BsaWI	WCCGGW	1 cut(s)	124
BsaXI	ACNNNNNCTCC	4 cut(s)	119, 149, 1348, 1378
Bsc4I	CCNNNNNNNGG	2 cut(s)	223, 648
Bse1I	ACTGG	2 cut(s)	293, 1177
Bse3DI	GCAATG	1 cut(s)	519
BseCI	ATCGAT	1 cut(s)	1452
BseDI	CCNNGG	1 cut(s)	47
BseGI	GGATG	6 cut(s)	358, 745, 820, 1192, 1320, 1327
BseLI	CCNNNNNNNGG	2 cut(s)	223, 648
BseMI	GCAATG	1 cut(s)	519
BseMII	CTCAG	3 cut(s)	282, 897, 1185
BseNI	ACTGG	2 cut(s)	293, 1177
BseRI	GAGGAG	3 cut(s)	110, 646, 1340
BseXI	GCAGC	2 cut(s)	1202, 1252
Bsh1236I	CGCG	1 cut(s)	820
BshFI	GGCC	1 cut(s)	641
BshVI	ATCGAT	1 cut(s)	1452
BsiSI	CCGG	2 cut(s)	125, 812
BslI	CCNNNNNNNGG	2 cut(s)	223, 648
BsmAI	GTCTC	3 cut(s)	271, 348, 1349
BsmBI	CGTCTC	1 cut(s)	348
BsmI	GAATGC	2 cut(s)	490, 1051
BsnI	GGCC	1 cut(s)	641
BspACI	CCGC	4 cut(s)	114, 820, 1263, 1497
BspANI	GGCC	1 cut(s)	641
BspCNI	CTCAG	3 cut(s)	281, 898, 1186
BspDI	ATCGAT	1 cut(s)	1452
BspFNI	CGCG	1 cut(s)	820
BspHI	TCATGA	2 cut(s)	346, 775
BspLI	GGNNCC	1 cut(s)	1554
BspMAI	CTGCAG	1 cut(s)	94
BsrBI	CCGCTC	1 cut(s)	1497
BsrDI	GCAATG	1 cut(s)	519
BsrI	ACTGG	2 cut(s)	293, 1177
BssECI	CCNNGG	1 cut(s)	47
BssNAI	GTATAC	1 cut(s)	39
BssSI	CACGAG	1 cut(s)	1281
Bst1107I	GTATAC	1 cut(s)	39
Bst2BI	CACGAG	1 cut(s)	1281
Bst4CI	ACNGT	4 cut(s)	135, 731, 845, 1670
Bst6I	CTCTTC	2 cut(s)	686, 990
BstC8I	GCNNGC	2 cut(s)	771, 1516
BstDEI	CTNAG	8 cut(s)	9, 14, 268, 416, 594, 906, 1134, 1194
BstF5I	GGATG	6 cut(s)	358, 745, 820, 1192, 1320, 1327
BstFNI	CGCG	1 cut(s)	820
BstHHI	GCGC	2 cut(s)	820, 1270
BstMAI	GTCTC	3 cut(s)	271, 348, 1349
BstMWI	GCNNNNNNNGC	4 cut(s)	10, 604, 671, 817
BstNSI	RCATGY	1 cut(s)	773
BstSFI	CTRYAG	1 cut(s)	90
BstUI	CGCG	1 cut(s)	820
BstV1I	GCAGC	2 cut(s)	1202, 1252
BstV2I	GAAGAC	1 cut(s)	1175
BstZ17I	GTATAC	1 cut(s)	39
Bsu15I	ATCGAT	1 cut(s)	1452
BsuRI	GGCC	1 cut(s)	641
BsuTUI	ATCGAT	1 cut(s)	1452
BtgZI	GCGATG	2 cut(s)	393, 896
BtrI	CACGTC	1 cut(s)	342
BtsCI	GGATG	6 cut(s)	358, 745, 820, 1192, 1320, 1327
BtsI	GCAGTG	1 cut(s)	87
BtsIMutI	CAGTG	2 cut(s)	87, 300
Cac8I	GCNNGC	2 cut(s)	771, 1516
CciI	TCATGA	2 cut(s)	346, 775
CfoI	GCGC	2 cut(s)	820, 1270
ClaI	ATCGAT	1 cut(s)	1452
Csp6I	GTAC	1 cut(s)	1538
CviAII	CATG	7 cut(s)	347, 770, 776, 1210, 1255, 1338, 1429
CviQI	GTAC	1 cut(s)	1538
DdeI	CTNAG	8 cut(s)	9, 14, 268, 416, 594, 906, 1134, 1194
DraIII	CACNNNGTG	1 cut(s)	1432
EaeI	YGGCCR	1 cut(s)	639
Eam1104I	CTCTTC	2 cut(s)	686, 990
EarI	CTCTTC	2 cut(s)	686, 990
Eco57I	CTGAAG	2 cut(s)	809, 1101
EcoT22I	ATGCAT	1 cut(s)	1053
Esp3I	CGTCTC	1 cut(s)	348
FaeI	CATG	7 cut(s)	350, 773, 779, 1213, 1258, 1341, 1432
FatI	CATG	7 cut(s)	346, 769, 775, 1209, 1254, 1337, 1428
FauI	CCCGC	1 cut(s)	1490
FblI	GTMKAC	2 cut(s)	38, 1245
Fnu4HI	GCNGC	3 cut(s)	114, 1191, 1266
FokI	GGATG	6 cut(s)	365, 752, 827, 1199, 1327, 1334
Fsp4HI	GCNGC	3 cut(s)	114, 1191, 1266
FspBI	CTAG	3 cut(s)	876, 936, 1557
GlaI	GCGC	2 cut(s)	819, 1269
GluI	GCNGC	3 cut(s)	114, 1191, 1266
HaeIII	GGCC	1 cut(s)	641
HapII	CCGG	2 cut(s)	125, 812
HhaI	GCGC	2 cut(s)	820, 1270
Hin1II	CATG	7 cut(s)	350, 773, 779, 1213, 1258, 1341, 1432
Hin6I	GCGC	2 cut(s)	818, 1268
HinP1I	GCGC	2 cut(s)	818, 1268
HincII	GTYRAC	1 cut(s)	260
HindII	GTYRAC	1 cut(s)	260
HindIII	AAGCTT	8 cut(s)	11, 26, 444, 596, 791, 948, 1083, 1512
HpaII	CCGG	2 cut(s)	125, 812
HphI	GGTGA	2 cut(s)	114, 1444
Hpy166II	GTNNAC	4 cut(s)	39, 260, 912, 1246
Hpy188I	TCNGA	5 cut(s)	51, 271, 789, 861, 1632
Hpy188III	TCNNGA	8 cut(s)	238, 347, 776, 917, 1127, 1232, 1281, 1624
Hpy8I	GTNNAC	4 cut(s)	39, 260, 912, 1246
Hpy99I	CGWCG	1 cut(s)	1233
HpyAV	CCTTC	6 cut(s)	177, 228, 328, 414, 892, 956
HpyCH4III	ACNGT	4 cut(s)	135, 731, 845, 1670
HpyCH4IV	ACGT	3 cut(s)	341, 1300, 1350
HpyF10VI	GCNNNNNNNGC	4 cut(s)	10, 604, 671, 817
HpyF3I	CTNAG	8 cut(s)	9, 14, 268, 416, 594, 906, 1134, 1194
HpySE526I	ACGT	3 cut(s)	341, 1300, 1350
Hsp92II	CATG	7 cut(s)	350, 773, 779, 1213, 1258, 1341, 1432
HspAI	GCGC	2 cut(s)	818, 1268
LmnI	GCTCC	2 cut(s)	127, 1369
Lsp1109I	GCAGC	2 cut(s)	1202, 1252
LweI	GCATC	9 cut(s)	661, 730, 805, 862, 990, 1038, 1120, 1177, 1432
MaeI	CTAG	3 cut(s)	876, 936, 1557
MaeII	ACGT	3 cut(s)	341, 1300, 1350
MaeIII	GTNAC	7 cut(s)	76, 120, 388, 601, 901, 925, 1030
MbiI	CCGCTC	1 cut(s)	1497
MlsI	TGGCCA	1 cut(s)	641
MluCI	AATT	5 cut(s)	229, 469, 541, 560, 863
MluNI	TGGCCA	1 cut(s)	641
MlyI	GAGTC	2 cut(s)	107, 128
MmeI	TCCRAC	3 cut(s)	85, 416, 972
Mox20I	TGGCCA	1 cut(s)	641
Mph1103I	ATGCAT	1 cut(s)	1053
MroXI	GAANNNNTTC	2 cut(s)	783, 794
MscI	TGGCCA	1 cut(s)	641
MseI	TTAA	5 cut(s)	144, 360, 981, 1182, 1308
MslI	CAYNNNNRTG	2 cut(s)	351, 774
Msp20I	TGGCCA	1 cut(s)	641
MspA1I	CMGCKG	2 cut(s)	1193, 1265
MspI	CCGG	2 cut(s)	125, 812
Mva1269I	GAATGC	2 cut(s)	490, 1051
MvnI	CGCG	1 cut(s)	820
MwoI	GCNNNNNNNGC	4 cut(s)	10, 604, 671, 817
NlaIII	CATG	7 cut(s)	350, 773, 779, 1213, 1258, 1341, 1432
NlaIV	GGNNCC	1 cut(s)	1554
NmuCI	GTSAC	2 cut(s)	120, 1030
NsiI	ATGCAT	1 cut(s)	1053
NspI	RCATGY	1 cut(s)	773
PaeI	GCATGC	1 cut(s)	773
PagI	TCATGA	2 cut(s)	346, 775
PcsI	WCGNNNNNNNCGW	1 cut(s)	611
PctI	GAATGC	2 cut(s)	490, 1051
PdmI	GAANNNNTTC	2 cut(s)	783, 794
PfeI	GAWTC	8 cut(s)	54, 439, 590, 838, 1216, 1334, 1627, 1661
PkrI	GCNGC	3 cut(s)	115, 1192, 1267
PleI	GAGTC	2 cut(s)	106, 127
PpsI	GAGTC	2 cut(s)	106, 127
PsiI	TTATAA	1 cut(s)	507
Psp1406I	AACGTT	1 cut(s)	1350
PspN4I	GGNNCC	1 cut(s)	1554
PstI	CTGCAG	1 cut(s)	94
PvuII	CAGCTG	1 cut(s)	1193
RsaI	GTAC	1 cut(s)	1539
RsaNI	GTAC	1 cut(s)	1538
RseI	CAYNNNNRTG	2 cut(s)	351, 774
SaqAI	TTAA	5 cut(s)	144, 360, 981, 1182, 1308
SatI	GCNGC	3 cut(s)	114, 1191, 1266
SchI	GAGTC	2 cut(s)	107, 128
SfaNI	GCATC	9 cut(s)	661, 730, 805, 862, 990, 1038, 1120, 1177, 1432
SfcI	CTRYAG	1 cut(s)	90
SmiMI	CAYNNNNRTG	2 cut(s)	351, 774
SmlI	CTYRAG	2 cut(s)	1592, 1622
SmoI	CTYRAG	2 cut(s)	1592, 1622
SphI	GCATGC	1 cut(s)	773
Sse9I	AATT	5 cut(s)	229, 469, 541, 560, 863
SsiI	CCGC	4 cut(s)	114, 820, 1263, 1497
SspI	AATATT	1 cut(s)	1416
SspMI	CTAG	3 cut(s)	876, 936, 1557
TaaI	ACNGT	4 cut(s)	135, 731, 845, 1670
TaiI	ACGT	3 cut(s)	344, 1303, 1353
TaqI	TCGA	7 cut(s)	179, 237, 798, 1166, 1452, 1460, 1646
TasI	AATT	5 cut(s)	229, 469, 541, 560, 863
TauI	GCSGC	1 cut(s)	116
TfiI	GAWTC	8 cut(s)	54, 439, 590, 838, 1216, 1334, 1627, 1661
Tru1I	TTAA	5 cut(s)	144, 360, 981, 1182, 1308
Tru9I	TTAA	5 cut(s)	144, 360, 981, 1182, 1308
TscAI	CASTG	2 cut(s)	94, 300
TseFI	GTSAC	2 cut(s)	120, 1030
TseI	GCWGC	2 cut(s)	1190, 1265
Tsp45I	GTSAC	2 cut(s)	120, 1030
TspGWI	ACGGA	1 cut(s)	79
TspRI	CASTG	2 cut(s)	94, 300
XapI	RAATTY	3 cut(s)	469, 541, 863
XceI	RCATGY	1 cut(s)	773
XmiI	GTMKAC	2 cut(s)	38, 1245
XmnI	GAANNNNTTC	2 cut(s)	783, 794
XspI	CTAG	3 cut(s)	876, 936, 1557
Zsp2I	ATGCAT	1 cut(s)	1053

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.