Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001942.1

Orthogroup ID

OG0006285

Physical Location & Seq

Genomic Coordinates Reverse (-)

46174 .. 46653

Gene Structure 480 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001942.1_g000008.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 480 bp

atgacaaagcagggtgtaaaaccggatgctatgacctataacaccctgatttcttgtgcttgcgagcattcgcaggaagaggctgctctcaagttgctgaagaaaatggaggaggattcctgcaagccggatgttcagacatacgccccgttgttgaagatgtgctgcagaaagaagaggatgaaggtgctctactttttgttagaccacatgtttaagaatgacattagtatcgacgctggaacctatgcgctcttggtacgtgggatgtgcaagaatggtaaacccgaaaacgcttgctccttctttgaggagatggcattgaagggttttgttcccaaggacagtacatacaagatgttgctagaggaattgcaggggaagaatatggagaaagagaagaaacatattgagaagttgatgttgcaggcaaagagcaaggaaacgtataatcaacccttcctgaacatctggtgttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

159

Amino Acids

18.39

Weight (kDa)

8.7

Isoelectric Point (pI)

52.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006285)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22670
fragaria_vesca	FvH4_4g00721
malus_domestica	MD13G1197300.v1.1
prunus_persica	Prupe.1G018400_v2.0.a1
pyrus_communis	pycom13g17020
rosa_chinensis	RchiOBHm_Chr1g0322101 RchiOBHm_Chr4g0386451
rosa_laevigata	RLG00000010131 RLG00000010157 RLG00000010161
rosa_multiflora	Rmu_co8274927.1_g000001 Rmu_sc0001942.1_g000008 Rmu_sc0001942.1_g000027 Rmu_sc0001942.1_g000051 Rmu_sc0002785.1_g000008 Rmu_sc0003786.1_g000023 Rmu_sc0006648.1_g000016 Rmu_sc0036937.1_g000001 Rmu_ssc0000272.1_g000008 Rmu_ssc0000272.1_g000009
rosa_roxburghii	Rroxscaffold_5G00333960 Rroxscaffold_6G00392780
rosa_samantha	Rh1AG049600 Rh4BG009300 Rh4CG014300 Rh4DG010100
rosa_wichuraiana	Rw4G000030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcuI	CTGAAG	1 cut(s)	119
AfaI	GTAC	2 cut(s)	261, 349
AflIII	ACRYGT	1 cut(s)	210
AgsI	TTSAA	2 cut(s)	157, 325
Alw21I	GWGCWC	1 cut(s)	192
ApeKI	GCWGC	2 cut(s)	83, 165
AspLEI	GCGC	1 cut(s)	253
BaeI	ACNNNNGTAYC	2 cut(s)	214, 247
BarI	GAAGNNNNNNTAC	2 cut(s)	176, 208
Bbv12I	GWGCWC	1 cut(s)	192
BbvI	GCAGC	2 cut(s)	70, 152
BccI	CCATC	1 cut(s)	310
BfaI	CTAG	1 cut(s)	365
BfmI	CTRYAG	1 cut(s)	166
BisI	GCNGC	2 cut(s)	84, 166
BlsI	GCNGC	2 cut(s)	85, 167
BmiI	GGNNCC	1 cut(s)	244
BmsI	GCATC	1 cut(s)	16
BpuEI	CTTGAG	1 cut(s)	74
BsaAI	YACGTR	1 cut(s)	263
BsaJI	CCNNGG	1 cut(s)	339
BsaWI	WCCGGW	1 cut(s)	22
BsaXI	ACNNNNNCTCC	2 cut(s)	284, 314
BseDI	CCNNGG	1 cut(s)	339
BseGI	GGATG	4 cut(s)	31, 136, 186, 273
BseRI	GAGGAG	2 cut(s)	125, 326
BseXI	GCAGC	2 cut(s)	70, 152
BsiHKAI	GWGCWC	1 cut(s)	192
BsiSI	CCGG	2 cut(s)	23, 128
BsmI	GAATGC	1 cut(s)	67
Bsp1286I	GDGCHC	1 cut(s)	192
BspLI	GGNNCC	1 cut(s)	244
BspMAI	CTGCAG	1 cut(s)	170
BssECI	CCNNGG	1 cut(s)	339
BssT1I	CCWWGG	1 cut(s)	339
Bst4CI	ACNGT	1 cut(s)	347
Bst6I	CTCTTC	2 cut(s)	72, 170
BstBAI	YACGTR	1 cut(s)	263
BstC8I	GCNNGC	5 cut(s)	61, 65, 125, 298, 429
BstF5I	GGATG	4 cut(s)	31, 136, 186, 273
BstHHI	GCGC	1 cut(s)	253
BstNSI	RCATGY	1 cut(s)	214
BstSFI	CTRYAG	1 cut(s)	166
BstV1I	GCAGC	2 cut(s)	70, 152
BtsCI	GGATG	4 cut(s)	31, 136, 186, 273
Cac8I	GCNNGC	5 cut(s)	61, 65, 125, 298, 429
CfoI	GCGC	1 cut(s)	253
CseI	GACGC	1 cut(s)	245
Csp6I	GTAC	2 cut(s)	260, 348
CviAII	CATG	1 cut(s)	211
CviJI	RGCY	2 cut(s)	83, 127
CviKI_1	RGCY	2 cut(s)	83, 127
CviQI	GTAC	2 cut(s)	260, 348
Eam1104I	CTCTTC	2 cut(s)	72, 170
EarI	CTCTTC	2 cut(s)	72, 170
Eco130I	CCWWGG	1 cut(s)	339
Eco57I	CTGAAG	1 cut(s)	119
EcoT14I	CCWWGG	1 cut(s)	339
ErhI	CCWWGG	1 cut(s)	339
FaeI	CATG	1 cut(s)	214
FaiI	YATR	9 cut(s)	32, 39, 142, 212, 249, 352, 389, 408, 450
FatI	CATG	1 cut(s)	210
Fnu4HI	GCNGC	2 cut(s)	84, 166
FokI	GGATG	4 cut(s)	38, 143, 193, 280
Fsp4HI	GCNGC	2 cut(s)	84, 166
FspBI	CTAG	1 cut(s)	365
GlaI	GCGC	1 cut(s)	252
GluI	GCNGC	2 cut(s)	84, 166
HapII	CCGG	2 cut(s)	23, 128
HgaI	GACGC	1 cut(s)	245
HhaI	GCGC	1 cut(s)	253
Hin1II	CATG	1 cut(s)	214
Hin6I	GCGC	1 cut(s)	251
HinP1I	GCGC	1 cut(s)	251
HinfI	GANTC	1 cut(s)	116
HpaII	CCGG	2 cut(s)	23, 128
Hpy166II	GTNNAC	1 cut(s)	284
Hpy188I	TCNGA	1 cut(s)	138
Hpy188III	TCNNGA	1 cut(s)	463
Hpy8I	GTNNAC	1 cut(s)	284
Hpy99I	CGWCG	1 cut(s)	239
HpyAV	CCTTC	4 cut(s)	178, 313, 319, 469
HpyCH4III	ACNGT	1 cut(s)	347
HpyCH4IV	ACGT	2 cut(s)	262, 446
HpyCH4V	TGCA	5 cut(s)	123, 168, 273, 376, 427
HpySE526I	ACGT	2 cut(s)	262, 446
Hsp92II	CATG	1 cut(s)	214
HspAI	GCGC	1 cut(s)	251
LmnI	GCTCC	1 cut(s)	305
Lsp1109I	GCAGC	2 cut(s)	70, 152
LweI	GCATC	1 cut(s)	16
MaeI	CTAG	1 cut(s)	365
MaeII	ACGT	2 cut(s)	262, 446
MboII	GAAGA	6 cut(s)	89, 112, 169, 187, 394, 412
MhlI	GDGCHC	1 cut(s)	192
MluCI	AATT	1 cut(s)	371
MnlI	CCTC	6 cut(s)	73, 103, 106, 171, 304, 361
MseI	TTAA	1 cut(s)	216
MspI	CCGG	2 cut(s)	23, 128
Mva1269I	GAATGC	1 cut(s)	67
NlaIII	CATG	1 cut(s)	214
NlaIV	GGNNCC	1 cut(s)	244
NspI	RCATGY	1 cut(s)	214
PciI	ACATGT	1 cut(s)	210
PctI	GAATGC	1 cut(s)	67
PfeI	GAWTC	1 cut(s)	116
PkrI	GCNGC	2 cut(s)	85, 167
Ppu21I	YACGTR	1 cut(s)	263
PscI	ACATGT	1 cut(s)	210
PspN4I	GGNNCC	1 cut(s)	244
PstI	CTGCAG	1 cut(s)	170
RsaI	GTAC	2 cut(s)	261, 349
RsaNI	GTAC	2 cut(s)	260, 348
SaqAI	TTAA	1 cut(s)	216
SatI	GCNGC	2 cut(s)	84, 166
SduI	GDGCHC	1 cut(s)	192
SetI	ASST	5 cut(s)	38, 189, 248, 265, 449
SfaNI	GCATC	1 cut(s)	16
SfcI	CTRYAG	1 cut(s)	166
SmlI	CTYRAG	1 cut(s)	89
SmoI	CTYRAG	1 cut(s)	89
Sse9I	AATT	1 cut(s)	371
SspMI	CTAG	1 cut(s)	365
StyI	CCWWGG	1 cut(s)	339
TaaI	ACNGT	1 cut(s)	347
TaiI	ACGT	2 cut(s)	265, 449
TaqI	TCGA	1 cut(s)	234
TasI	AATT	1 cut(s)	371
TatI	WGTACW	1 cut(s)	347
TfiI	GAWTC	1 cut(s)	116
Tru1I	TTAA	1 cut(s)	216
Tru9I	TTAA	1 cut(s)	216
TseI	GCWGC	2 cut(s)	83, 165
TspDTI	ATGAA	1 cut(s)	197
XceI	RCATGY	1 cut(s)	214
XspI	CTAG	1 cut(s)	365

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.