Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001942.1

Orthogroup ID

OG0006285

Physical Location & Seq

Genomic Coordinates Reverse (-)

223940 .. 224326

Gene Structure 387 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001942.1_g000051.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 387 bp

atgcaccacaaccgaggtcgccgagtcaccggacctccccagctgggtcaagttcttcgagacccaaagcacgcagctcccgacgacgacttcgtcatcccttcactggccgattgggtcgaaacccacaacctaaaccaccccaccaaacctctcaagctctcaacttccgataccgacgacctcgaaagcatcagtagaaaattgaaaatccggtacccatcgcctgaaaatggagctgaagcgttggaaaggtacgattttgaggtgtctaacagtttggtgcaacgggttttgatgaggtttagcaatgattgggtcccggcgttggggtttttcacttgggcaaaacgtcgagcaggttataggcatcttcctgaggcctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

128

Amino Acids

14.7

Weight (kDa)

8.11

Isoelectric Point (pI)

36.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006285)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22670
fragaria_vesca	FvH4_4g00721
malus_domestica	MD13G1197300.v1.1
prunus_persica	Prupe.1G018400_v2.0.a1
pyrus_communis	pycom13g17020
rosa_chinensis	RchiOBHm_Chr1g0322101 RchiOBHm_Chr4g0386451
rosa_laevigata	RLG00000010131 RLG00000010157 RLG00000010161
rosa_multiflora	Rmu_co8274927.1_g000001 Rmu_sc0001942.1_g000008 Rmu_sc0001942.1_g000027 Rmu_sc0001942.1_g000051 Rmu_sc0002785.1_g000008 Rmu_sc0003786.1_g000023 Rmu_sc0006648.1_g000016 Rmu_sc0036937.1_g000001 Rmu_ssc0000272.1_g000008 Rmu_ssc0000272.1_g000009
rosa_roxburghii	Rroxscaffold_5G00333960 Rroxscaffold_6G00392780
rosa_samantha	Rh1AG049600 Rh4BG009300 Rh4CG014300 Rh4DG010100
rosa_wichuraiana	Rw4G000030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	92
Acc36I	ACCTGC	1 cut(s)	350
Acc65I	GGTACC	1 cut(s)	216
AccB1I	GGYRCC	1 cut(s)	216
AcoI	YGGCCR	1 cut(s)	108
AcuI	CTGAAG	1 cut(s)	261
AfaI	GTAC	2 cut(s)	218, 257
AfiI	CCNNNNNNNGG	5 cut(s)	44, 106, 233, 328, 329
AgsI	TTSAA	1 cut(s)	208
AluBI	AGCT	4 cut(s)	43, 77, 160, 239
AluI	AGCT	4 cut(s)	43, 77, 160, 239
Alw26I	GTCTC	1 cut(s)	54
AoxI	GGCC	2 cut(s)	108, 381
ApeKI	GCWGC	1 cut(s)	74
ArsI	GACNNNNNNTTYG	2 cut(s)	74, 106
Asp718I	GGTACC	1 cut(s)	216
AspS9I	GGNCC	2 cut(s)	32, 319
AsuC2I	CCSGG	1 cut(s)	323
AsuHPI	GGTGA	1 cut(s)	19
AvaII	GGWCC	2 cut(s)	32, 319
AxyI	CCTNAGG	1 cut(s)	378
BanI	GGYRCC	1 cut(s)	216
BbvI	GCAGC	1 cut(s)	86
BccI	CCATC	1 cut(s)	229
BcnI	CCSGG	1 cut(s)	323
BcoDI	GTCTC	1 cut(s)	54
BfuAI	ACCTGC	1 cut(s)	350
BisI	GCNGC	1 cut(s)	75
BlsI	GCNGC	1 cut(s)	76
Bme1390I	CCNGG	1 cut(s)	323
Bme18I	GGWCC	2 cut(s)	32, 319
BmgT120I	GGNCC	2 cut(s)	32, 319
BmiI	GGNNCC	3 cut(s)	218, 320, 321
BmrFI	CCNGG	1 cut(s)	323
BmsI	GCATC	2 cut(s)	201, 379
BpuEI	CTTGAG	1 cut(s)	140
BpuMI	CCSGG	1 cut(s)	323
BsaI	GGTCTC	1 cut(s)	54
BsaJI	CCNNGG	1 cut(s)	13
BsaWI	WCCGGW	2 cut(s)	29, 213
BsaXI	ACNNNNNCTCC	2 cut(s)	19, 49
Bsc4I	CCNNNNNNNGG	5 cut(s)	44, 106, 233, 328, 329
Bse1I	ACTGG	1 cut(s)	111
Bse21I	CCTNAGG	1 cut(s)	378
Bse3DI	GCAATG	1 cut(s)	316
BseDI	CCNNGG	1 cut(s)	13
BseGI	GGATG	1 cut(s)	96
BseLI	CCNNNNNNNGG	5 cut(s)	44, 106, 233, 328, 329
BseMI	GCAATG	1 cut(s)	316
BseMII	CTCAG	1 cut(s)	369
BseNI	ACTGG	1 cut(s)	111
BseXI	GCAGC	1 cut(s)	86
BseYI	CCCAGC	2 cut(s)	39, 43
BshFI	GGCC	2 cut(s)	110, 383
BshNI	GGYRCC	1 cut(s)	216
BsiSI	CCGG	3 cut(s)	30, 214, 323
BslFI	GGGAC	1 cut(s)	305
BslI	CCNNNNNNNGG	5 cut(s)	44, 106, 233, 328, 329
BsmAI	GTCTC	1 cut(s)	54
BsmFI	GGGAC	1 cut(s)	305
BsnI	GGCC	2 cut(s)	110, 383
Bso31I	GGTCTC	1 cut(s)	54
BspANI	GGCC	2 cut(s)	110, 383
BspCNI	CTCAG	1 cut(s)	370
BspLI	GGNNCC	3 cut(s)	218, 320, 321
BspMI	ACCTGC	1 cut(s)	350
BspT107I	GGYRCC	1 cut(s)	216
BspTNI	GGTCTC	1 cut(s)	54
BsrDI	GCAATG	1 cut(s)	316
BsrI	ACTGG	1 cut(s)	111
BssECI	CCNNGG	1 cut(s)	13
Bst4CI	ACNGT	1 cut(s)	278
BstC8I	GCNNGC	1 cut(s)	72
BstDEI	CTNAG	1 cut(s)	378
BstF5I	GGATG	1 cut(s)	96
BstMAI	GTCTC	1 cut(s)	54
BstSCI	CCNGG	1 cut(s)	321
BstV1I	GCAGC	1 cut(s)	86
Bsu36I	CCTNAGG	1 cut(s)	378
BsuRI	GGCC	2 cut(s)	110, 383
BtgZI	GCGATG	1 cut(s)	207
BtsCI	GGATG	1 cut(s)	96
BtsIMutI	CAGTG	1 cut(s)	104
BveI	ACCTGC	1 cut(s)	350
Cac8I	GCNNGC	1 cut(s)	72
Cfr13I	GGNCC	2 cut(s)	32, 319
Csp6I	GTAC	2 cut(s)	217, 256
CviJI	RGCY	6 cut(s)	43, 77, 110, 160, 239, 383
CviKI_1	RGCY	6 cut(s)	43, 77, 110, 160, 239, 383
CviQI	GTAC	2 cut(s)	217, 256
DdeI	CTNAG	1 cut(s)	378
DrdI	GACNNNNNNGTC	1 cut(s)	92
DseDI	GACNNNNNNGTC	1 cut(s)	92
EaeI	YGGCCR	1 cut(s)	108
Eco147I	AGGCCT	1 cut(s)	383
Eco31I	GGTCTC	1 cut(s)	54
Eco47I	GGWCC	2 cut(s)	32, 319
Eco57I	CTGAAG	1 cut(s)	261
Eco81I	CCTNAGG	1 cut(s)	378
EcoO109I	RGGNCCY	1 cut(s)	319
FaiI	YATR	1 cut(s)	366
FaqI	GGGAC	1 cut(s)	305
Fnu4HI	GCNGC	1 cut(s)	75
FokI	GGATG	1 cut(s)	83
Fsp4HI	GCNGC	1 cut(s)	75
GluI	GCNGC	1 cut(s)	75
GsaI	CCCAGC	2 cut(s)	43, 47
HaeIII	GGCC	2 cut(s)	110, 383
HapII	CCGG	3 cut(s)	30, 214, 323
HinfI	GANTC	1 cut(s)	24
HpaII	CCGG	3 cut(s)	30, 214, 323
HphI	GGTGA	1 cut(s)	19
Hpy188I	TCNGA	1 cut(s)	172
Hpy188III	TCNNGA	3 cut(s)	59, 80, 377
Hpy99I	CGWCG	4 cut(s)	86, 89, 182, 357
HpyAV	CCTTC	1 cut(s)	111
HpyCH4III	ACNGT	1 cut(s)	278
HpyCH4IV	ACGT	1 cut(s)	352
HpyCH4V	TGCA	2 cut(s)	4, 286
HpyF3I	CTNAG	1 cut(s)	378
HpySE526I	ACGT	1 cut(s)	352
KflI	GGGWCCC	1 cut(s)	319
KpnI	GGTACC	1 cut(s)	220
LmnI	GCTCC	2 cut(s)	82, 236
LpnPI	CCDG	8 cut(s)	29, 43, 53, 92, 227, 240, 336, 345
Lsp1109I	GCAGC	1 cut(s)	86
LweI	GCATC	2 cut(s)	201, 379
MaeII	ACGT	1 cut(s)	352
MaeIII	GTNAC	1 cut(s)	25
MboII	GAAGA	2 cut(s)	47, 365
MluCI	AATT	1 cut(s)	203
MlyI	GAGTC	1 cut(s)	33
MmeI	TCCRAC	1 cut(s)	228
MnlI	CCTC	7 cut(s)	8, 45, 162, 194, 259, 294, 373
MspA1I	CMGCKG	1 cut(s)	43
MspI	CCGG	3 cut(s)	30, 214, 323
MspR9I	CCNGG	1 cut(s)	323
NciI	CCSGG	1 cut(s)	323
NlaIV	GGNNCC	3 cut(s)	218, 320, 321
NmeAIII	GCCGAG	1 cut(s)	47
NmuCI	GTSAC	1 cut(s)	25
PceI	AGGCCT	1 cut(s)	383
PcsI	WCGNNNNNNNCGW	2 cut(s)	78, 90
PflFI	GACNNNGTC	1 cut(s)	92
PkrI	GCNGC	1 cut(s)	76
PleI	GAGTC	1 cut(s)	32
PpsI	GAGTC	1 cut(s)	32
PpuMI	RGGWCCY	1 cut(s)	319
Psp5II	RGGWCCY	1 cut(s)	319
PspFI	CCCAGC	2 cut(s)	39, 43
PspN4I	GGNNCC	3 cut(s)	218, 320, 321
PspPI	GGNCC	2 cut(s)	32, 319
PspPPI	RGGWCCY	1 cut(s)	319
PsyI	GACNNNGTC	1 cut(s)	92
PvuII	CAGCTG	1 cut(s)	43
RsaI	GTAC	2 cut(s)	218, 257
RsaNI	GTAC	2 cut(s)	217, 256
SatI	GCNGC	1 cut(s)	75
Sau96I	GGNCC	2 cut(s)	32, 319
SchI	GAGTC	1 cut(s)	33
ScrFI	CCNGG	1 cut(s)	323
SfaNI	GCATC	2 cut(s)	201, 379
SinI	GGWCC	2 cut(s)	32, 319
SmlI	CTYRAG	1 cut(s)	155
SmoI	CTYRAG	1 cut(s)	155
Sse9I	AATT	1 cut(s)	203
SseBI	AGGCCT	1 cut(s)	383
StuI	AGGCCT	1 cut(s)	383
StyD4I	CCNGG	1 cut(s)	321
TaaI	ACNGT	1 cut(s)	278
TaiI	ACGT	1 cut(s)	355
TaqI	TCGA	4 cut(s)	58, 120, 186, 355
TasI	AATT	1 cut(s)	203
TscAI	CASTG	1 cut(s)	111
TseFI	GTSAC	1 cut(s)	25
TseI	GCWGC	1 cut(s)	74
Tsp45I	GTSAC	1 cut(s)	25
TspRI	CASTG	1 cut(s)	111
Tth111I	GACNNNGTC	1 cut(s)	92
VpaK11BI	GGWCC	2 cut(s)	32, 319

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.