Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000272.1

Orthogroup ID

OG0006285

Physical Location & Seq

Genomic Coordinates Forward (+)

49786 .. 51542

Gene Structure 1757 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000272.1_g000009.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1152 bp

atgttcgtaggttgtattcaggtgaaaatttcgtggattgaactcattgaagaatgtaggttgcggacttcgggacttgcggtcaaattctcttcgtctcatcctgaagcgttggaagggtgcgattttgagctgtcaaacggtttggtgcaacgggttttgatgaggtttagcaatgattgggtcccgccgttggggtttttcacttgggaaaaacgtcgaacaggttataggcatcttcctgaggcctataactccatggttgatgtattgggaaagtccaagaattttgaacttatgtgggattttgtggaggaaatggatcaaattggagatgggtatgtgacgtttgagacaatgactaaggtgtttaggagacttgcaaagggtggtaagcaccaagaggcaatcgaggagtttcggggcatggagcgatttggattgagcaaagatgttgcggcgttaaacactctactgaatgcattggtgaaggagagaagcgttgagcttgctcaagaagctttcttggagtttaaggaatctatacctgtgaattctcacagctttaatgttttgatacatgggtggtgtaagaataggaagttagacattgctaggaacacaatggaggagatggagagacacgggtttctccctgatgttttctcttatacttgtttggttgaggcgtattgtagtgataaggattttcgcaaagttgatgaagttcttagtgagatgaagggcaaggcttgcgagccgaatgctgtgacatacactatcgtaatgcatgctttggggaaggcgagggagataaccaaggctttggaggtttatgagttgatgaaagggaatggtgttgttcctgatgtttcgttttacagctctttgatttacattcttggtaaagccggcaggcttaaggatgttcaagaagtggttgaggatacgacaaaacagggtgtaaaactggacgctatgacctataacaccctgatttcttgtgcttgcgagcatttgcaggaagaggctgctctcaagttgctgaagaaaatggaggaggattcgtacaagccggatgttcagacatacgccccgttgttgaagatgtgctgcagaaagaagaggatgaaggtgctctacttttgttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

383

Amino Acids

43.95

Weight (kDa)

6.15

Isoelectric Point (pI)

36.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006285)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22670
fragaria_vesca	FvH4_4g00721
malus_domestica	MD13G1197300.v1.1
prunus_persica	Prupe.1G018400_v2.0.a1
pyrus_communis	pycom13g17020
rosa_chinensis	RchiOBHm_Chr1g0322101 RchiOBHm_Chr4g0386451
rosa_laevigata	RLG00000010131 RLG00000010157 RLG00000010161
rosa_multiflora	Rmu_co8274927.1_g000001 Rmu_sc0001942.1_g000008 Rmu_sc0001942.1_g000027 Rmu_sc0001942.1_g000051 Rmu_sc0002785.1_g000008 Rmu_sc0003786.1_g000023 Rmu_sc0006648.1_g000016 Rmu_sc0036937.1_g000001 Rmu_ssc0000272.1_g000008 Rmu_ssc0000272.1_g000009
rosa_roxburghii	Rroxscaffold_5G00333960 Rroxscaffold_6G00392780
rosa_samantha	Rh1AG049600 Rh4BG009300 Rh4CG014300 Rh4DG010100
rosa_wichuraiana	Rw4G000030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	64, 80, 188, 458
AclWI	GGATC	1 cut(s)	330
AcsI	RAATTY	4 cut(s)	27, 86, 286, 553
AcuI	CTGAAG	2 cut(s)	126, 1067
AfaI	GTAC	1 cut(s)	1070
AfiI	CCNNNNNNNGG	2 cut(s)	193, 194
AflII	CTTAAG	1 cut(s)	920
AgsI	TTSAA	5 cut(s)	41, 50, 293, 932, 1105
AhdI	GACNNNNNGTC	1 cut(s)	80
AluBI	AGCT	5 cut(s)	133, 508, 521, 564, 885
AluI	AGCT	5 cut(s)	133, 508, 521, 564, 885
Alw21I	GWGCWC	1 cut(s)	1140
Alw26I	GTCTC	4 cut(s)	102, 347, 370, 634
AlwI	GGATC	1 cut(s)	330
AoxI	GGCC	1 cut(s)	246
ApeKI	GCWGC	2 cut(s)	1031, 1113
ApoI	RAATTY	4 cut(s)	27, 86, 286, 553
AspS9I	GGNCC	1 cut(s)	184
AsuHPI	GGTGA	2 cut(s)	34, 499
AvaII	GGWCC	1 cut(s)	184
AxyI	CCTNAGG	1 cut(s)	243
BaeI	ACNNNNGTAYC	2 cut(s)	569, 602
BarI	GAAGNNNNNNTAC	1 cut(s)	1124
Bbv12I	GWGCWC	1 cut(s)	1140
BbvI	GCAGC	2 cut(s)	1018, 1100
BccI	CCATC	2 cut(s)	329, 628
BceAI	ACGGC	1 cut(s)	175
BcgI	CGANNNNNNTGC	2 cut(s)	746, 780
BciVI	GTATCC	1 cut(s)	940
BcoDI	GTCTC	4 cut(s)	102, 347, 370, 634
BfaI	CTAG	1 cut(s)	615
BfmI	CTRYAG	1 cut(s)	1114
BfrI	CTTAAG	1 cut(s)	920
BfuI	GTATCC	1 cut(s)	940
BisI	GCNGC	3 cut(s)	459, 1032, 1114
BlsI	GCNGC	3 cut(s)	460, 1033, 1115
Bme18I	GGWCC	1 cut(s)	184
BmeRI	GACNNNNNGTC	1 cut(s)	80
BmgT120I	GGNCC	1 cut(s)	184
BmiI	GGNNCC	2 cut(s)	185, 186
BmsI	GCATC	1 cut(s)	244
BpuEI	CTTGAG	2 cut(s)	498, 1022
BsaJI	CCNNGG	2 cut(s)	258, 819
BsaXI	ACNNNNNCTCC	2 cut(s)	1052, 1082
Bsc4I	CCNNNNNNNGG	2 cut(s)	193, 194
Bse118I	RCCGGY	1 cut(s)	911
Bse1I	ACTGG	1 cut(s)	975
Bse21I	CCTNAGG	1 cut(s)	243
Bse3DI	GCAATG	2 cut(s)	181, 609
BseDI	CCNNGG	2 cut(s)	258, 819
BseGI	GGATG	4 cut(s)	100, 931, 1084, 1134
BseLI	CCNNNNNNNGG	2 cut(s)	193, 194
BseMI	GCAATG	2 cut(s)	181, 609
BseMII	CTCAG	1 cut(s)	234
BseNI	ACTGG	1 cut(s)	975
BseRI	GAGGAG	3 cut(s)	428, 644, 1073
BseXI	GCAGC	2 cut(s)	1018, 1100
BshFI	GGCC	1 cut(s)	248
BsiHKAI	GWGCWC	1 cut(s)	1140
BsiSI	CCGG	2 cut(s)	912, 1076
BslFI	GGGAC	2 cut(s)	87, 170
BslI	CCNNNNNNNGG	2 cut(s)	193, 194
BsmAI	GTCTC	4 cut(s)	102, 347, 370, 634
BsmBI	CGTCTC	1 cut(s)	102
BsmFI	GGGAC	2 cut(s)	87, 170
BsmI	GAATGC	2 cut(s)	484, 769
BsnI	GGCC	1 cut(s)	248
Bsp1286I	GDGCHC	1 cut(s)	1140
Bsp143I	GATC	1 cut(s)	322
Bsp19I	CCATGG	1 cut(s)	258
BspACI	CCGC	4 cut(s)	64, 80, 188, 458
BspANI	GGCC	1 cut(s)	248
BspCNI	CTCAG	1 cut(s)	235
BspLI	GGNNCC	2 cut(s)	185, 186
BspMAI	CTGCAG	1 cut(s)	1118
BspPI	GGATC	1 cut(s)	330
BspTI	CTTAAG	1 cut(s)	920
BsrDI	GCAATG	2 cut(s)	181, 609
BsrFI	RCCGGY	1 cut(s)	911
BsrI	ACTGG	1 cut(s)	975
BssAI	RCCGGY	1 cut(s)	911
BssECI	CCNNGG	2 cut(s)	258, 819
BssMI	GATC	1 cut(s)	322
BssT1I	CCWWGG	2 cut(s)	258, 819
Bst4CI	ACNGT	1 cut(s)	143
Bst6I	CTCTTC	3 cut(s)	97, 1020, 1118
BstAFI	CTTAAG	1 cut(s)	920
BstAPI	GCANNNNNTGC	1 cut(s)	753
BstC8I	GCNNGC	8 cut(s)	510, 754, 758, 792, 913, 917, 1009, 1013
BstDEI	CTNAG	3 cut(s)	243, 363, 731
BstDSI	CCRYGG	1 cut(s)	258
BstF5I	GGATG	4 cut(s)	100, 931, 1084, 1134
BstKTI	GATC	1 cut(s)	325
BstMAI	GTCTC	4 cut(s)	102, 347, 370, 634
BstMBI	GATC	1 cut(s)	322
BstMWI	GCNNNNNNNGC	2 cut(s)	518, 753
BstNSI	RCATGY	1 cut(s)	794
BstSFI	CTRYAG	1 cut(s)	1114
BstV1I	GCAGC	2 cut(s)	1018, 1100
BstXI	CCANNNNNNTGG	1 cut(s)	826
Bsu36I	CCTNAGG	1 cut(s)	243
BsuI	GTATCC	1 cut(s)	940
BsuRI	GGCC	1 cut(s)	248
BtgI	CCRYGG	1 cut(s)	258
BtsCI	GGATG	4 cut(s)	100, 931, 1084, 1134
Cac8I	GCNNGC	8 cut(s)	510, 754, 758, 792, 913, 917, 1009, 1013
Cfr10I	RCCGGY	1 cut(s)	911
Cfr13I	GGNCC	1 cut(s)	184
CseI	GACGC	1 cut(s)	983
Csp6I	GTAC	1 cut(s)	1069
CviAII	CATG	4 cut(s)	259, 427, 581, 791
CviQI	GTAC	1 cut(s)	1069
DdeI	CTNAG	3 cut(s)	243, 363, 731
DpnI	GATC	1 cut(s)	324
DpnII	GATC	1 cut(s)	322
DriI	GACNNNNNGTC	1 cut(s)	80
Eam1104I	CTCTTC	3 cut(s)	97, 1020, 1118
Eam1105I	GACNNNNNGTC	1 cut(s)	80
EarI	CTCTTC	3 cut(s)	97, 1020, 1118
Eco130I	CCWWGG	2 cut(s)	258, 819
Eco147I	AGGCCT	1 cut(s)	248
Eco47I	GGWCC	1 cut(s)	184
Eco57I	CTGAAG	2 cut(s)	126, 1067
Eco81I	CCTNAGG	1 cut(s)	243
EcoO109I	RGGNCCY	1 cut(s)	184
EcoRI	GAATTC	1 cut(s)	553
EcoT14I	CCWWGG	2 cut(s)	258, 819
EcoT22I	ATGCAT	2 cut(s)	484, 792
ErhI	CCWWGG	2 cut(s)	258, 819
Esp3I	CGTCTC	1 cut(s)	102
FaeI	CATG	4 cut(s)	262, 430, 584, 794
FaqI	GGGAC	2 cut(s)	87, 170
FatI	CATG	4 cut(s)	258, 426, 580, 790
FauI	CCCGC	1 cut(s)	195
Fnu4HI	GCNGC	3 cut(s)	459, 1032, 1114
FokI	GGATG	4 cut(s)	87, 938, 1091, 1141
Fsp4HI	GCNGC	3 cut(s)	459, 1032, 1114
FspBI	CTAG	1 cut(s)	615
GluI	GCNGC	3 cut(s)	459, 1032, 1114
HaeIII	GGCC	1 cut(s)	248
HapII	CCGG	2 cut(s)	912, 1076
HgaI	GACGC	1 cut(s)	983
Hin1II	CATG	4 cut(s)	262, 430, 584, 794
HindIII	AAGCTT	1 cut(s)	519
HinfI	GANTC	2 cut(s)	539, 1064
HpaII	CCGG	2 cut(s)	912, 1076
HphI	GGTGA	2 cut(s)	34, 499
Hpy188I	TCNGA	1 cut(s)	1086
Hpy188III	TCNNGA	6 cut(s)	72, 104, 242, 515, 866, 932
Hpy99I	CGWCG	1 cut(s)	222
HpyAV	CCTTC	5 cut(s)	110, 484, 736, 796, 1126
HpyCH4III	ACNGT	1 cut(s)	143
HpyCH4IV	ACGT	2 cut(s)	217, 347
HpyCH4V	TGCA	6 cut(s)	151, 383, 482, 790, 1021, 1116
HpyF10VI	GCNNNNNNNGC	2 cut(s)	518, 753
HpyF3I	CTNAG	3 cut(s)	243, 363, 731
HpySE526I	ACGT	2 cut(s)	217, 347
Hsp92II	CATG	4 cut(s)	262, 430, 584, 794
KflI	GGGWCCC	1 cut(s)	184
KroI	GCCGGC	1 cut(s)	911
KroNI	GCCGGC	1 cut(s)	913
Kzo9I	GATC	1 cut(s)	322
LmnI	GCTCC	1 cut(s)	430
Lsp1109I	GCAGC	2 cut(s)	1018, 1100
LweI	GCATC	1 cut(s)	244
MaeI	CTAG	1 cut(s)	615
MaeII	ACGT	2 cut(s)	217, 347
MaeIII	GTNAC	2 cut(s)	343, 769
MalI	GATC	1 cut(s)	324
MboI	GATC	1 cut(s)	322
MboII	GAAGA	7 cut(s)	62, 84, 230, 1037, 1060, 1117, 1135
MhlI	GDGCHC	1 cut(s)	1140
MluCI	AATT	5 cut(s)	27, 86, 286, 327, 553
MmeI	TCCRAC	1 cut(s)	93
Mph1103I	ATGCAT	2 cut(s)	484, 792
MroNI	GCCGGC	1 cut(s)	911
MseI	TTAA	4 cut(s)	464, 534, 567, 921
MspCI	CTTAAG	1 cut(s)	920
MspI	CCGG	2 cut(s)	912, 1076
Mva1269I	GAATGC	2 cut(s)	484, 769
MwoI	GCNNNNNNNGC	2 cut(s)	518, 753
NaeI	GCCGGC	1 cut(s)	913
NcoI	CCATGG	1 cut(s)	258
NdeII	GATC	1 cut(s)	322
NgoMIV	GCCGGC	1 cut(s)	911
NlaIII	CATG	4 cut(s)	262, 430, 584, 794
NlaIV	GGNNCC	2 cut(s)	185, 186
NmuCI	GTSAC	2 cut(s)	343, 769
NsiI	ATGCAT	2 cut(s)	484, 792
NspI	RCATGY	1 cut(s)	794
PaeI	GCATGC	1 cut(s)	794
PceI	AGGCCT	1 cut(s)	248
PctI	GAATGC	2 cut(s)	484, 769
PdiI	GCCGGC	1 cut(s)	913
PfeI	GAWTC	2 cut(s)	539, 1064
PkrI	GCNGC	3 cut(s)	460, 1033, 1115
PpuMI	RGGWCCY	1 cut(s)	184
Psp5II	RGGWCCY	1 cut(s)	184
PspN4I	GGNNCC	2 cut(s)	185, 186
PspPI	GGNCC	1 cut(s)	184
PspPPI	RGGWCCY	1 cut(s)	184
PstI	CTGCAG	1 cut(s)	1118
RsaI	GTAC	1 cut(s)	1070
RsaNI	GTAC	1 cut(s)	1069
SaqAI	TTAA	4 cut(s)	464, 534, 567, 921
SatI	GCNGC	3 cut(s)	459, 1032, 1114
Sau3AI	GATC	1 cut(s)	322
Sau96I	GGNCC	1 cut(s)	184
SduI	GDGCHC	1 cut(s)	1140
SfaNI	GCATC	1 cut(s)	244
SfcI	CTRYAG	1 cut(s)	1114
SinI	GGWCC	1 cut(s)	184
SmlI	CTYRAG	3 cut(s)	513, 920, 1037
SmoI	CTYRAG	3 cut(s)	513, 920, 1037
SphI	GCATGC	1 cut(s)	794
Sse9I	AATT	5 cut(s)	27, 86, 286, 327, 553
SseBI	AGGCCT	1 cut(s)	248
SsiI	CCGC	4 cut(s)	64, 80, 188, 458
SspMI	CTAG	1 cut(s)	615
StuI	AGGCCT	1 cut(s)	248
StyI	CCWWGG	2 cut(s)	258, 819
TaaI	ACNGT	1 cut(s)	143
TaiI	ACGT	2 cut(s)	220, 350
TaqI	TCGA	2 cut(s)	220, 411
TasI	AATT	5 cut(s)	27, 86, 286, 327, 553
TauI	GCSGC	1 cut(s)	461
TfiI	GAWTC	2 cut(s)	539, 1064
Tru1I	TTAA	4 cut(s)	464, 534, 567, 921
Tru9I	TTAA	4 cut(s)	464, 534, 567, 921
TseFI	GTSAC	2 cut(s)	343, 769
TseI	GCWGC	2 cut(s)	1031, 1113
Tsp45I	GTSAC	2 cut(s)	343, 769
TspDTI	ATGAA	4 cut(s)	738, 755, 860, 1145
Vha464I	CTTAAG	1 cut(s)	920
VpaK11BI	GGWCC	1 cut(s)	184
XapI	RAATTY	4 cut(s)	27, 86, 286, 553
XceI	RCATGY	1 cut(s)	794
XspI	CTAG	1 cut(s)	615
Zsp2I	ATGCAT	2 cut(s)	484, 792

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.