Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000272.1

Orthogroup ID

OG0006285

Physical Location & Seq

Genomic Coordinates Forward (+)

49182 .. 49460

Gene Structure 279 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000272.1_g000008.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 279 bp

atgctcacaaggctccacaatctcaagctccattcaacttcaaaaacccacatcaatgccctgcgttacttcttaaaccctctatgcaccacaaccgaggtcgccgagtcacccgagcttccaagctgggtcaagttcttcgagacaaaccacccaaaacacgcagcttctgacgaagacgacgacttcgtcatcccttcactggccagttgggtcgaaacccacaacctaaaccaccccaccaaacctcccaagccctcaacttcaggggcgggctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

92

Amino Acids

10.3

Weight (kDa)

6.35

Isoelectric Point (pI)

37.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006285)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22670
fragaria_vesca	FvH4_4g00721
malus_domestica	MD13G1197300.v1.1
prunus_persica	Prupe.1G018400_v2.0.a1
pyrus_communis	pycom13g17020
rosa_chinensis	RchiOBHm_Chr1g0322101 RchiOBHm_Chr4g0386451
rosa_laevigata	RLG00000010131 RLG00000010157 RLG00000010161
rosa_multiflora	Rmu_co8274927.1_g000001 Rmu_sc0001942.1_g000008 Rmu_sc0001942.1_g000027 Rmu_sc0001942.1_g000051 Rmu_sc0002785.1_g000008 Rmu_sc0003786.1_g000023 Rmu_sc0006648.1_g000016 Rmu_sc0036937.1_g000001 Rmu_ssc0000272.1_g000008 Rmu_ssc0000272.1_g000009
rosa_roxburghii	Rroxscaffold_5G00333960 Rroxscaffold_6G00392780
rosa_samantha	Rh1AG049600 Rh4BG009300 Rh4CG014300 Rh4DG010100
rosa_wichuraiana	Rw4G000030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	188
AciI	CCGC	1 cut(s)	272
AcoI	YGGCCR	1 cut(s)	204
AcuI	CTGAAG	1 cut(s)	249
AfiI	CCNNNNNNNGG	1 cut(s)	202
AgsI	TTSAA	2 cut(s)	36, 42
AluBI	AGCT	4 cut(s)	28, 118, 126, 167
AluI	AGCT	4 cut(s)	28, 118, 126, 167
Alw26I	GTCTC	1 cut(s)	137
AlwNI	CAGNNNCTG	1 cut(s)	170
Ama87I	CYCGRG	1 cut(s)	113
AoxI	GGCC	1 cut(s)	204
ApeKI	GCWGC	1 cut(s)	164
ArsI	GACNNNNNNTTYG	2 cut(s)	170, 202
AsuHPI	GGTGA	1 cut(s)	102
AvaI	CYCGRG	1 cut(s)	113
BalI	TGGCCA	1 cut(s)	206
BbsI	GAAGAC	1 cut(s)	183
BbvI	GCAGC	1 cut(s)	176
BcoDI	GTCTC	1 cut(s)	137
BisI	GCNGC	1 cut(s)	165
BlsI	GCNGC	1 cut(s)	166
BmeT110I	CYCGRG	1 cut(s)	113
BmiI	GGNNCC	1 cut(s)	14
BpiI	GAAGAC	1 cut(s)	183
BpuEI	CTTGAG	1 cut(s)	8
BsaJI	CCNNGG	1 cut(s)	96
BsaXI	ACNNNNNCTCC	2 cut(s)	232, 262
Bsc4I	CCNNNNNNNGG	1 cut(s)	202
Bse1I	ACTGG	2 cut(s)	207, 207
BseDI	CCNNGG	1 cut(s)	96
BseGI	GGATG	1 cut(s)	192
BseLI	CCNNNNNNNGG	1 cut(s)	202
BseNI	ACTGG	2 cut(s)	207, 207
BseXI	GCAGC	1 cut(s)	176
BseYI	CCCAGC	1 cut(s)	126
BshFI	GGCC	1 cut(s)	206
BsiHKCI	CYCGRG	1 cut(s)	113
BslI	CCNNNNNNNGG	1 cut(s)	202
BsmAI	GTCTC	1 cut(s)	137
BsnI	GGCC	1 cut(s)	206
BsoBI	CYCGRG	1 cut(s)	113
BspACI	CCGC	1 cut(s)	272
BspANI	GGCC	1 cut(s)	206
BspLI	GGNNCC	1 cut(s)	14
BsrI	ACTGG	2 cut(s)	207, 207
BssECI	CCNNGG	1 cut(s)	96
BstC8I	GCNNGC	1 cut(s)	274
BstF5I	GGATG	1 cut(s)	192
BstMAI	GTCTC	1 cut(s)	137
BstMWI	GCNNNNNNNGC	1 cut(s)	10
BstV1I	GCAGC	1 cut(s)	176
BstV2I	GAAGAC	1 cut(s)	183
BsuRI	GGCC	1 cut(s)	206
BtsCI	GGATG	1 cut(s)	192
BtsIMutI	CAGTG	1 cut(s)	200
Cac8I	GCNNGC	1 cut(s)	274
CaiI	CAGNNNCTG	1 cut(s)	170
CviJI	RGCY	8 cut(s)	13, 28, 118, 126, 167, 206, 256, 276
CviKI_1	RGCY	8 cut(s)	13, 28, 118, 126, 167, 206, 256, 276
DrdI	GACNNNNNNGTC	1 cut(s)	188
DseDI	GACNNNNNNGTC	1 cut(s)	188
EaeI	YGGCCR	1 cut(s)	204
Eco57I	CTGAAG	1 cut(s)	249
Eco88I	CYCGRG	1 cut(s)	113
FaiI	YATR	1 cut(s)	85
FauI	CCCGC	1 cut(s)	265
Fnu4HI	GCNGC	1 cut(s)	165
FokI	GGATG	1 cut(s)	179
Fsp4HI	GCNGC	1 cut(s)	165
GluI	GCNGC	1 cut(s)	165
GsaI	CCCAGC	1 cut(s)	130
HaeIII	GGCC	1 cut(s)	206
HinfI	GANTC	1 cut(s)	107
HphI	GGTGA	1 cut(s)	102
Hpy188I	TCNGA	1 cut(s)	172
Hpy188III	TCNNGA	1 cut(s)	142
Hpy99I	CGWCG	1 cut(s)	185
HpyAV	CCTTC	1 cut(s)	207
HpyCH4V	TGCA	1 cut(s)	87
HpyF10VI	GCNNNNNNNGC	1 cut(s)	10
LmnI	GCTCC	2 cut(s)	18, 33
LpnPI	CCDG	5 cut(s)	74, 112, 188, 220, 252
Lsp1109I	GCAGC	1 cut(s)	176
MaeIII	GTNAC	2 cut(s)	65, 108
MboII	GAAGA	2 cut(s)	130, 188
MlsI	TGGCCA	1 cut(s)	206
MluNI	TGGCCA	1 cut(s)	206
MlyI	GAGTC	1 cut(s)	116
MnlI	CCTC	4 cut(s)	90, 91, 258, 268
Mox20I	TGGCCA	1 cut(s)	206
MscI	TGGCCA	1 cut(s)	206
MseI	TTAA	1 cut(s)	74
MslI	CAYNNNNRTG	1 cut(s)	54
Msp20I	TGGCCA	1 cut(s)	206
MwoI	GCNNNNNNNGC	1 cut(s)	10
NlaIV	GGNNCC	1 cut(s)	14
NmeAIII	GCCGAG	1 cut(s)	130
NmuCI	GTSAC	1 cut(s)	108
PcsI	WCGNNNNNNNCGW	2 cut(s)	180, 186
PflFI	GACNNNGTC	1 cut(s)	188
PkrI	GCNGC	1 cut(s)	166
PleI	GAGTC	1 cut(s)	115
PpsI	GAGTC	1 cut(s)	115
PspFI	CCCAGC	1 cut(s)	126
PspN4I	GGNNCC	1 cut(s)	14
PstNI	CAGNNNCTG	1 cut(s)	170
PsyI	GACNNNGTC	1 cut(s)	188
RseI	CAYNNNNRTG	1 cut(s)	54
SaqAI	TTAA	1 cut(s)	74
SatI	GCNGC	1 cut(s)	165
SchI	GAGTC	1 cut(s)	116
SetI	ASST	7 cut(s)	30, 102, 120, 128, 169, 231, 250
SmiMI	CAYNNNNRTG	1 cut(s)	54
SmlI	CTYRAG	1 cut(s)	23
SmoI	CTYRAG	1 cut(s)	23
SsiI	CCGC	1 cut(s)	272
TaqI	TCGA	2 cut(s)	141, 216
Tru1I	TTAA	1 cut(s)	74
Tru9I	TTAA	1 cut(s)	74
TscAI	CASTG	1 cut(s)	207
TseFI	GTSAC	1 cut(s)	108
TseI	GCWGC	1 cut(s)	164
Tsp45I	GTSAC	1 cut(s)	108
TspRI	CASTG	1 cut(s)	207
Tth111I	GACNNNGTC	1 cut(s)	188

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.