Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002785.1

Orthogroup ID

OG0006285

Physical Location & Seq

Genomic Coordinates Reverse (-)

35016 .. 39578

Gene Structure 4563 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002785.1_g000008.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1545 bp

atgctcacaaggctccacaatctcaagctccattcaactgcaaaaacccacatcaatgccctgcgttacttcttaaaccctctatgcaccacaaccgaggtcgccgagtcaccggaccttccaagctgggtaaagttcttcgacgccaaccacccaaaacacgcagattcttcaacttcaaaaacccacatcaatgccctgcgttacttcttaaaccctctatgcaccacaaccgaggtcgccgagtcaccggaccttccaagctgggtaaagttcttcgacaccaaccacccaaaacacgcagctttcgacgacgacgacttcgtcatcccttcactggccaattgggtcgaaacccacaacctaaaccaccccaccaaacctcccaagccctcaacttccgataccgacgacctcgaaagcatcagtagaatcttgaaaatccggtacccattgccggaaaatgcagctgaagcgttggaagggtacgattttgagctgtcgccgactttcgacgacgacgacttcgtcatcccttcactggccaattgggtcgaaacccacaacctaaaccaccccaccaaacctcccaagccctcaacttccgataccgacgacctcgaaagcatcagtagaatcttaaaagtccggtacccatcgccggaaaatgcagctgaatcgttggaaaggtataattttgagttatcaaacggtttggtgcaacgggttttgatgaggtttagcaatgattgggtcccggcgttggggtttttcacttgggcaaaacgtcgaacaggttataggcatcttcctgaggcctataactctatgaacaatgtattgggaaagtccaagaattttgaccttatgtgggattttgttgaggaaatggatcaaattggagatgggtatgtgacattggagacaatgactaaggtgtttaggagacttgcaaaggctggtaagcaccaagaggcaatcgaggcgtttcggggcatggagcgattcggattgagcaaagatgttgtggcattgaacactctactgaatgcattggtgaaggagagaagcgttgagcttgcccaagaagctttcttggagttcaaggaatctatacctgtgaattctcacagctttaatgttttgatacatggctggtgtaagaataggaagttggatattgctaggaacacaatggaggagatggagagacacgggtttggcccggatgttttctcttatacttgtttggttgaggcgtattgtagtgataaggattttcgcaaagttgatgaagttcttagtgagatgaagggcaaggcttgcgagccgaatgctgtgacatacactatcgtaatgcatgctttggggaaggcgagagagataaccaaggctttggaggtttatgagttgatgaaagggaatggggttgttcctgatgtttcgttttacagctctttgatttacattcttggtaaagccggcaggcttaaggatgttcaagaagtggcatatgaggattttgggagatccaaaaatctgtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

514

Amino Acids

58.57

Weight (kDa)

5.68

Isoelectric Point (pI)

33.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006285)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22670
fragaria_vesca	FvH4_4g00721
malus_domestica	MD13G1197300.v1.1
prunus_persica	Prupe.1G018400_v2.0.a1
pyrus_communis	pycom13g17020
rosa_chinensis	RchiOBHm_Chr1g0322101 RchiOBHm_Chr4g0386451
rosa_laevigata	RLG00000010131 RLG00000010157 RLG00000010161
rosa_multiflora	Rmu_co8274927.1_g000001 Rmu_sc0001942.1_g000008 Rmu_sc0001942.1_g000027 Rmu_sc0001942.1_g000051 Rmu_sc0002785.1_g000008 Rmu_sc0003786.1_g000023 Rmu_sc0006648.1_g000016 Rmu_sc0036937.1_g000001 Rmu_ssc0000272.1_g000008 Rmu_ssc0000272.1_g000009
rosa_roxburghii	Rroxscaffold_5G00333960 Rroxscaffold_6G00392780
rosa_samantha	Rh1AG049600 Rh4BG009300 Rh4CG014300 Rh4DG010100
rosa_wichuraiana	Rw4G000030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	323, 527
Acc65I	GGTACC	2 cut(s)	447, 651
AccB1I	GGYRCC	2 cut(s)	447, 651
AclWI	GGATC	2 cut(s)	900, 1524
AcoI	YGGCCR	2 cut(s)	339, 543
AcsI	RAATTY	2 cut(s)	856, 1123
AcuI	CTGAAG	1 cut(s)	492
AcyI	GRCGYC	1 cut(s)	144
AfaI	GTAC	3 cut(s)	449, 488, 653
AfiI	CCNNNNNNNGG	7 cut(s)	337, 457, 541, 661, 763, 764, 871
AflII	CTTAAG	1 cut(s)	1490
AgsI	TTSAA	7 cut(s)	36, 174, 180, 439, 1036, 1105, 1502
AjuI	GAANNNNNNNTTGG	4 cut(s)	824, 856, 1157, 1189
Alw26I	GTCTC	3 cut(s)	917, 940, 1204
AlwI	GGATC	2 cut(s)	900, 1524
AoxI	GGCC	4 cut(s)	339, 543, 816, 1222
ApeKI	GCWGC	3 cut(s)	302, 467, 671
ApoI	RAATTY	2 cut(s)	856, 1123
ArsI	GACNNNNNNTTYG	4 cut(s)	305, 337, 509, 541
Asp718I	GGTACC	2 cut(s)	447, 651
AspS9I	GGNCC	4 cut(s)	115, 253, 754, 1223
AsuC2I	CCSGG	2 cut(s)	758, 1226
AsuHPI	GGTGA	3 cut(s)	102, 240, 1069
AvaII	GGWCC	3 cut(s)	115, 253, 754
AxyI	CCTNAGG	1 cut(s)	813
BalI	TGGCCA	2 cut(s)	341, 545
BanI	GGYRCC	2 cut(s)	447, 651
BbvI	GCAGC	3 cut(s)	314, 479, 683
BccI	CCATC	3 cut(s)	664, 899, 1198
BcgI	CGANNNNNNTGC	4 cut(s)	660, 694, 1316, 1350
BcnI	CCSGG	2 cut(s)	758, 1226
BcoDI	GTCTC	3 cut(s)	917, 940, 1204
BfaI	CTAG	1 cut(s)	1185
BfrI	CTTAAG	1 cut(s)	1490
BisI	GCNGC	3 cut(s)	303, 468, 672
BlsI	GCNGC	3 cut(s)	304, 469, 673
Bme1390I	CCNGG	2 cut(s)	758, 1226
Bme18I	GGWCC	3 cut(s)	115, 253, 754
BmgT120I	GGNCC	4 cut(s)	115, 253, 754, 1223
BmiI	GGNNCC	5 cut(s)	14, 449, 653, 755, 756
BmrFI	CCNGG	2 cut(s)	758, 1226
BmsI	GCATC	3 cut(s)	432, 636, 814
BpuEI	CTTGAG	1 cut(s)	8
BpuMI	CCSGG	2 cut(s)	758, 1226
BsaHI	GRCGYC	1 cut(s)	144
BsaJI	CCNNGG	3 cut(s)	96, 234, 1389
BsaWI	WCCGGW	4 cut(s)	112, 250, 444, 648
BsaXI	ACNNNNNCTCC	4 cut(s)	367, 397, 571, 601
Bsc4I	CCNNNNNNNGG	7 cut(s)	337, 457, 541, 661, 763, 764, 871
Bse118I	RCCGGY	1 cut(s)	1481
Bse1I	ACTGG	2 cut(s)	342, 546
Bse21I	CCTNAGG	1 cut(s)	813
Bse3DI	GCAATG	2 cut(s)	452, 751
BseDI	CCNNGG	3 cut(s)	96, 234, 1389
BseGI	GGATG	4 cut(s)	327, 531, 1234, 1501
BseLI	CCNNNNNNNGG	7 cut(s)	337, 457, 541, 661, 763, 764, 871
BseMI	GCAATG	2 cut(s)	452, 751
BseMII	CTCAG	1 cut(s)	804
BseNI	ACTGG	2 cut(s)	342, 546
BseRI	GAGGAG	1 cut(s)	1214
BseXI	GCAGC	3 cut(s)	314, 479, 683
BseYI	CCCAGC	2 cut(s)	126, 264
BshFI	GGCC	4 cut(s)	341, 545, 818, 1224
BshNI	GGYRCC	2 cut(s)	447, 651
BsiSI	CCGG	9 cut(s)	113, 251, 445, 458, 649, 662, 758, 1226, 1482
BslFI	GGGAC	1 cut(s)	740
BslI	CCNNNNNNNGG	7 cut(s)	337, 457, 541, 661, 763, 764, 871
BsmAI	GTCTC	3 cut(s)	917, 940, 1204
BsmFI	GGGAC	1 cut(s)	740
BsmI	GAATGC	2 cut(s)	1054, 1339
BsnI	GGCC	4 cut(s)	341, 545, 818, 1224
Bsp143I	GATC	2 cut(s)	892, 1529
BspANI	GGCC	4 cut(s)	341, 545, 818, 1224
BspCNI	CTCAG	1 cut(s)	805
BspLI	GGNNCC	5 cut(s)	14, 449, 653, 755, 756
BspPI	GGATC	2 cut(s)	900, 1524
BspT107I	GGYRCC	2 cut(s)	447, 651
BspTI	CTTAAG	1 cut(s)	1490
BsrDI	GCAATG	2 cut(s)	452, 751
BsrFI	RCCGGY	1 cut(s)	1481
BsrI	ACTGG	2 cut(s)	342, 546
BssAI	RCCGGY	1 cut(s)	1481
BssECI	CCNNGG	3 cut(s)	96, 234, 1389
BssMI	GATC	2 cut(s)	892, 1529
BssNI	GRCGYC	1 cut(s)	144
BssT1I	CCWWGG	1 cut(s)	1389
Bst4CI	ACNGT	1 cut(s)	713
BstACI	GRCGYC	1 cut(s)	144
BstAFI	CTTAAG	1 cut(s)	1490
BstAPI	GCANNNNNTGC	1 cut(s)	1323
BstC8I	GCNNGC	6 cut(s)	1080, 1324, 1328, 1362, 1483, 1487
BstDEI	CTNAG	3 cut(s)	813, 933, 1301
BstF5I	GGATG	4 cut(s)	327, 531, 1234, 1501
BstKTI	GATC	2 cut(s)	895, 1532
BstMAI	GTCTC	3 cut(s)	917, 940, 1204
BstMBI	GATC	2 cut(s)	892, 1529
BstMWI	GCNNNNNNNGC	5 cut(s)	10, 473, 983, 1088, 1323
BstNSI	RCATGY	1 cut(s)	1364
BstSCI	CCNGG	2 cut(s)	756, 1224
BstV1I	GCAGC	3 cut(s)	314, 479, 683
BstX2I	RGATCY	1 cut(s)	1529
BstXI	CCANNNNNNTGG	1 cut(s)	1396
BstYI	RGATCY	1 cut(s)	1529
Bsu36I	CCTNAGG	1 cut(s)	813
BsuRI	GGCC	4 cut(s)	341, 545, 818, 1224
BtgZI	GCGATG	1 cut(s)	642
BtsCI	GGATG	4 cut(s)	327, 531, 1234, 1501
BtsIMutI	CAGTG	2 cut(s)	335, 539
Cac8I	GCNNGC	6 cut(s)	1080, 1324, 1328, 1362, 1483, 1487
Cfr10I	RCCGGY	1 cut(s)	1481
Cfr13I	GGNCC	4 cut(s)	115, 253, 754, 1223
CseI	GACGC	1 cut(s)	152
Csp6I	GTAC	3 cut(s)	448, 487, 652
CviAII	CATG	3 cut(s)	997, 1151, 1361
CviQI	GTAC	3 cut(s)	448, 487, 652
DdeI	CTNAG	3 cut(s)	813, 933, 1301
DpnI	GATC	2 cut(s)	894, 1531
DpnII	GATC	2 cut(s)	892, 1529
DrdI	GACNNNNNNGTC	2 cut(s)	323, 527
DseDI	GACNNNNNNGTC	2 cut(s)	323, 527
EaeI	YGGCCR	2 cut(s)	339, 543
Eco130I	CCWWGG	1 cut(s)	1389
Eco147I	AGGCCT	1 cut(s)	818
Eco47I	GGWCC	3 cut(s)	115, 253, 754
Eco57I	CTGAAG	1 cut(s)	492
Eco81I	CCTNAGG	1 cut(s)	813
EcoO109I	RGGNCCY	1 cut(s)	754
EcoRI	GAATTC	1 cut(s)	1123
EcoT14I	CCWWGG	1 cut(s)	1389
EcoT22I	ATGCAT	2 cut(s)	1054, 1362
ErhI	CCWWGG	1 cut(s)	1389
FaeI	CATG	3 cut(s)	1000, 1154, 1364
FaqI	GGGAC	1 cut(s)	740
FatI	CATG	3 cut(s)	996, 1150, 1360
FauNDI	CATATG	1 cut(s)	1513
Fnu4HI	GCNGC	3 cut(s)	303, 468, 672
FokI	GGATG	4 cut(s)	314, 518, 1241, 1508
Fsp4HI	GCNGC	3 cut(s)	303, 468, 672
FspBI	CTAG	1 cut(s)	1185
GluI	GCNGC	3 cut(s)	303, 468, 672
GsaI	CCCAGC	2 cut(s)	130, 268
HaeIII	GGCC	4 cut(s)	341, 545, 818, 1224
HapII	CCGG	9 cut(s)	113, 251, 445, 458, 649, 662, 758, 1226, 1482
HgaI	GACGC	1 cut(s)	152
Hin1I	GRCGYC	1 cut(s)	144
Hin1II	CATG	3 cut(s)	1000, 1154, 1364
HindIII	AAGCTT	1 cut(s)	1089
HinfI	GANTC	8 cut(s)	107, 167, 245, 432, 636, 677, 1005, 1109
HpaII	CCGG	9 cut(s)	113, 251, 445, 458, 649, 662, 758, 1226, 1482
HphI	GGTGA	3 cut(s)	102, 240, 1069
Hpy188I	TCNGA	3 cut(s)	403, 607, 1010
Hpy188III	TCNNGA	4 cut(s)	436, 812, 1436, 1502
HpyAV	CCTTC	8 cut(s)	128, 266, 342, 476, 546, 1054, 1306, 1366
HpyCH4III	ACNGT	1 cut(s)	713
HpyCH4IV	ACGT	1 cut(s)	787
HpyCH4V	TGCA	9 cut(s)	41, 87, 225, 467, 671, 721, 953, 1052, 1360
HpyF10VI	GCNNNNNNNGC	5 cut(s)	10, 473, 983, 1088, 1323
HpyF3I	CTNAG	3 cut(s)	813, 933, 1301
HpySE526I	ACGT	1 cut(s)	787
Hsp92I	GRCGYC	1 cut(s)	144
Hsp92II	CATG	3 cut(s)	1000, 1154, 1364
KflI	GGGWCCC	1 cut(s)	754
KpnI	GGTACC	2 cut(s)	451, 655
KroI	GCCGGC	1 cut(s)	1481
KroNI	GCCGGC	1 cut(s)	1483
Kzo9I	GATC	2 cut(s)	892, 1529
LmnI	GCTCC	3 cut(s)	18, 33, 1000
Lsp1109I	GCAGC	3 cut(s)	314, 479, 683
LweI	GCATC	3 cut(s)	432, 636, 814
MaeI	CTAG	1 cut(s)	1185
MaeII	ACGT	1 cut(s)	787
MaeIII	GTNAC	6 cut(s)	65, 108, 203, 246, 913, 1339
MalI	GATC	2 cut(s)	894, 1531
MboI	GATC	2 cut(s)	892, 1529
MboII	GAAGA	4 cut(s)	130, 162, 268, 800
MfeI	CAATTG	2 cut(s)	343, 547
MflI	RGATCY	1 cut(s)	1529
MlsI	TGGCCA	2 cut(s)	341, 545
MluCI	AATT	6 cut(s)	343, 547, 694, 856, 897, 1123
MluNI	TGGCCA	2 cut(s)	341, 545
MlyI	GAGTC	2 cut(s)	116, 254
MmeI	TCCRAC	3 cut(s)	459, 663, 1155
Mox20I	TGGCCA	2 cut(s)	341, 545
Mph1103I	ATGCAT	2 cut(s)	1054, 1362
MroNI	GCCGGC	1 cut(s)	1481
MscI	TGGCCA	2 cut(s)	341, 545
MseI	TTAA	5 cut(s)	74, 212, 641, 1137, 1491
MslI	CAYNNNNRTG	2 cut(s)	54, 192
Msp20I	TGGCCA	2 cut(s)	341, 545
MspA1I	CMGCKG	2 cut(s)	470, 674
MspCI	CTTAAG	1 cut(s)	1490
MspI	CCGG	9 cut(s)	113, 251, 445, 458, 649, 662, 758, 1226, 1482
MspR9I	CCNGG	2 cut(s)	758, 1226
MunI	CAATTG	2 cut(s)	343, 547
Mva1269I	GAATGC	2 cut(s)	1054, 1339
MwoI	GCNNNNNNNGC	5 cut(s)	10, 473, 983, 1088, 1323
NaeI	GCCGGC	1 cut(s)	1483
NciI	CCSGG	2 cut(s)	758, 1226
NdeI	CATATG	1 cut(s)	1513
NdeII	GATC	2 cut(s)	892, 1529
NgoMIV	GCCGGC	1 cut(s)	1481
NlaIII	CATG	3 cut(s)	1000, 1154, 1364
NlaIV	GGNNCC	5 cut(s)	14, 449, 653, 755, 756
NmeAIII	GCCGAG	2 cut(s)	130, 268
NmuCI	GTSAC	4 cut(s)	108, 246, 913, 1339
NsiI	ATGCAT	2 cut(s)	1054, 1362
NspI	RCATGY	1 cut(s)	1364
PaeI	GCATGC	1 cut(s)	1364
PceI	AGGCCT	1 cut(s)	818
PcsI	WCGNNNNNNNCGW	5 cut(s)	306, 315, 321, 519, 525
PctI	GAATGC	2 cut(s)	1054, 1339
PdiI	GCCGGC	1 cut(s)	1483
PfeI	GAWTC	6 cut(s)	167, 432, 636, 677, 1005, 1109
PflFI	GACNNNGTC	2 cut(s)	323, 527
PkrI	GCNGC	3 cut(s)	304, 469, 673
PleI	GAGTC	2 cut(s)	115, 253
PpsI	GAGTC	2 cut(s)	115, 253
PpuMI	RGGWCCY	1 cut(s)	754
Psp5II	RGGWCCY	1 cut(s)	754
PspFI	CCCAGC	2 cut(s)	126, 264
PspN4I	GGNNCC	5 cut(s)	14, 449, 653, 755, 756
PspPI	GGNCC	4 cut(s)	115, 253, 754, 1223
PspPPI	RGGWCCY	1 cut(s)	754
PsuI	RGATCY	1 cut(s)	1529
PsyI	GACNNNGTC	2 cut(s)	323, 527
PvuII	CAGCTG	2 cut(s)	470, 674
RsaI	GTAC	3 cut(s)	449, 488, 653
RsaNI	GTAC	3 cut(s)	448, 487, 652
RseI	CAYNNNNRTG	2 cut(s)	54, 192
SaqAI	TTAA	5 cut(s)	74, 212, 641, 1137, 1491
SatI	GCNGC	3 cut(s)	303, 468, 672
Sau3AI	GATC	2 cut(s)	892, 1529
Sau96I	GGNCC	4 cut(s)	115, 253, 754, 1223
SchI	GAGTC	2 cut(s)	116, 254
ScrFI	CCNGG	2 cut(s)	758, 1226
SfaNI	GCATC	3 cut(s)	432, 636, 814
SinI	GGWCC	3 cut(s)	115, 253, 754
SmiMI	CAYNNNNRTG	2 cut(s)	54, 192
SmlI	CTYRAG	2 cut(s)	23, 1490
SmoI	CTYRAG	2 cut(s)	23, 1490
SphI	GCATGC	1 cut(s)	1364
Sse9I	AATT	6 cut(s)	343, 547, 694, 856, 897, 1123
SseBI	AGGCCT	1 cut(s)	818
SspMI	CTAG	1 cut(s)	1185
StuI	AGGCCT	1 cut(s)	818
StyD4I	CCNGG	2 cut(s)	756, 1224
StyI	CCWWGG	1 cut(s)	1389
TaaI	ACNGT	1 cut(s)	713
TaiI	ACGT	1 cut(s)	790
TasI	AATT	6 cut(s)	343, 547, 694, 856, 897, 1123
TfiI	GAWTC	6 cut(s)	167, 432, 636, 677, 1005, 1109
Tru1I	TTAA	5 cut(s)	74, 212, 641, 1137, 1491
Tru9I	TTAA	5 cut(s)	74, 212, 641, 1137, 1491
TscAI	CASTG	2 cut(s)	342, 546
TseFI	GTSAC	4 cut(s)	108, 246, 913, 1339
TseI	GCWGC	3 cut(s)	302, 467, 671
Tsp45I	GTSAC	4 cut(s)	108, 246, 913, 1339
TspDTI	ATGAA	4 cut(s)	845, 1308, 1325, 1430
TspRI	CASTG	2 cut(s)	342, 546
Tth111I	GACNNNGTC	2 cut(s)	323, 527
Vha464I	CTTAAG	1 cut(s)	1490
VpaK11BI	GGWCC	3 cut(s)	115, 253, 754
XapI	RAATTY	2 cut(s)	856, 1123
XceI	RCATGY	1 cut(s)	1364
XspI	CTAG	1 cut(s)	1185
Zsp2I	ATGCAT	2 cut(s)	1054, 1362

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.