Rmu_sc0001942.1_g000027

Pentatricopeptide repeat-containing protein

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001942.1
Physical Location & Seq
Reverse (-)
109911 .. 111569
1659 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001942.1_g000027.1.cds

Sequence Viewer

Length: 1659 bp
atgctcagaaggctccacaatctcaagctccattcaacttcaaaaacccacatcaatgccctgcgttacttcttaaaccctctatgcaccacaaccgaggtcgccgagtcaccggacctccccagctgggtcaagttcttcgagaccaaccacccaaaacacgcagctcccgacgacgacgacgacttcgtcatcccttcactggccagttgggtcgaaacccacaacctaaatcaccccaccaaacctcccaagccctcaacttccgataccgacgacctcgaaagcatcagtagaatcttgaaaacccggtacccatcggcggaaaacgcagctgaagcgttggaaaggtacgattttgaggtatcaaacggtttggtgcaacgggttttgatgaggtttagcaatgattgggtcctggcgttggggtttttcacttgggcaaaacgtcgaacaggttataggcatcttccggaggcctataactccatggttgatgtattgggaaagtccaagaattttgaacttatgtgggattttgttaaggaaatggatcaaattggagatgggtatgtgacgttggagacaatgactaaggtgtttaggagacttgcaaagggtggtaagcaccaagaggcaatcgaggcgtttcggggcatggagcggttcggattgagcaaagatgttgcggcattgaacactctgatgaatgcattggtgaaggagagaagcgttgagcttgcccaagaagctttcttggagtttaaggaatctatacctgtgaatgctcacagctttaatgttttgatacatgggtggtgtaagaataggaagttggatattgctaggaacacaatggaggagatggagagacacgggtttggcccggatgttttctcttatacttgtttggttgaggcctattgtagtgacaaggattttcgcaaagttgatgaagttcttagtgaaatgaagggcaaggcttgcgagccgaatgctgtgacatacactatcgtaatgcatgctttggggaaggcgagagagataaccaaggctttggaggtttatgagttgatgaaagggaatggggttgttcctgatgtttcgttttacagctctttgatttacattcttggtaaagccggaaggcttaaggatgttcaagaagtggttgaggacatgacaaagcagggtgtaaaaccggatgctatgacctataacaccctgatttcttgtgcttgcgagcattcgcaggaagaggctgctctcaagttgctgaagaaaatggaggaggattcctgcaagccggatgttcagacatacgccccgttgttgaagatgtgctgcagaaagaagaggatgaaggtgctctactttttgttagaccacatgtttaagaatgacattagtatcgacgctggaacctatgcgctcttggtacgtgggatgtgcaagaatggtaaacccgaaaacgcttgctccttctttgaggagatggcattgaagggttttgttcccaaggacagtacatacaagatgttgctagaggaattgcaggggaagaatatggagaaagagaagaaacatattgagaagttgatgttgcaggcaaagagcaaggaaacgtataatcaacccttcctgaacatctggtgttga

Protein Analysis

552

Amino Acids

63.22

Weight (kDa)

6.77

Isoelectric Point (pI)

35.06

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 188
Acc65I GGTACC 1 cut(s) 312
AccB1I GGYRCC 1 cut(s) 312
AccBSI CCGCTC 1 cut(s) 664
AccIII TCCGGA 1 cut(s) 472
AciI CCGC 3 cut(s) 323, 664, 689
AclWI GGATC 1 cut(s) 561
AcoI YGGCCR 1 cut(s) 204
AcsI RAATTY 1 cut(s) 517
AcuI CTGAAG 2 cut(s) 357, 1298
AfaI GTAC 4 cut(s) 314, 353, 1440, 1528
AfiI CCNNNNNNNGG 4 cut(s) 127, 202, 322, 424
AflII CTTAAG 1 cut(s) 1151
AflIII ACRYGT 1 cut(s) 1389
AgsI TTSAA 8 cut(s) 36, 42, 304, 524, 697, 1163, 1336, 1504
AjnI CCWGG 1 cut(s) 417
AjuI GAANNNNNNNTTGG 2 cut(s) 818, 850
AluBI AGCT 8 cut(s) 28, 126, 167, 335, 739, 752, 795, 1116
AluI AGCT 8 cut(s) 28, 126, 167, 335, 739, 752, 795, 1116
Alw21I GWGCWC 1 cut(s) 1371
Alw26I GTCTC 4 cut(s) 137, 578, 601, 865
AlwI GGATC 1 cut(s) 561
Aor13HI TCCGGA 1 cut(s) 472
AoxI GGCC 4 cut(s) 204, 477, 883, 918
ApeKI GCWGC 4 cut(s) 164, 332, 1262, 1344
ApoI RAATTY 1 cut(s) 517
ArsI GACNNNNNNTTYG 2 cut(s) 170, 202
Asp718I GGTACC 1 cut(s) 312
AspLEI GCGC 1 cut(s) 1432
AspS9I GGNCC 3 cut(s) 115, 415, 884
AsuC2I CCSGG 2 cut(s) 310, 887
AsuHPI GGTGA 3 cut(s) 102, 227, 730
AvaII GGWCC 2 cut(s) 115, 415
BaeI ACNNNNGTAYC 4 cut(s) 800, 833, 1393, 1426
BalI TGGCCA 1 cut(s) 206
BanI GGYRCC 1 cut(s) 312
BarI GAAGNNNNNNTAC 2 cut(s) 1355, 1387
Bbv12I GWGCWC 1 cut(s) 1371
BbvI GCAGC 4 cut(s) 176, 344, 1249, 1331
BccI CCATC 4 cut(s) 325, 560, 859, 1489
BcgI CGANNNNNNTGC 2 cut(s) 977, 1011
BciT130I CCWGG 1 cut(s) 419
BcnI CCSGG 2 cut(s) 310, 887
BcoDI GTCTC 4 cut(s) 137, 578, 601, 865
BfaI CTAG 2 cut(s) 846, 1544
BfmI CTRYAG 1 cut(s) 1345
BfrI CTTAAG 1 cut(s) 1151
BisI GCNGC 5 cut(s) 165, 333, 690, 1263, 1345
BlsI GCNGC 5 cut(s) 166, 334, 691, 1264, 1346
Bme1390I CCNGG 3 cut(s) 310, 419, 887
Bme18I GGWCC 2 cut(s) 115, 415
BmgT120I GGNCC 3 cut(s) 115, 415, 884
BmiI GGNNCC 4 cut(s) 14, 314, 416, 1423
BmrFI CCNGG 3 cut(s) 310, 419, 887
BmsI GCATC 3 cut(s) 297, 475, 1195
BpuEI CTTGAG 2 cut(s) 8, 1253
BpuMI CCSGG 2 cut(s) 310, 887
BsaAI YACGTR 1 cut(s) 1442
BsaI GGTCTC 1 cut(s) 137
BsaJI CCNNGG 4 cut(s) 96, 489, 1050, 1518
BsaWI WCCGGW 3 cut(s) 112, 472, 1201
BsaXI ACNNNNNCTCC 6 cut(s) 102, 132, 232, 262, 1463, 1493
Bsc4I CCNNNNNNNGG 4 cut(s) 127, 202, 322, 424
Bse1I ACTGG 2 cut(s) 207, 207
Bse3DI GCAATG 1 cut(s) 412
BseAI TCCGGA 1 cut(s) 472
BseBI CCWGG 1 cut(s) 419
BseDI CCNNGG 4 cut(s) 96, 489, 1050, 1518
BseGI GGATG 7 cut(s) 192, 895, 1162, 1210, 1315, 1365, 1452
BseLI CCNNNNNNNGG 4 cut(s) 127, 202, 322, 424
BseMI GCAATG 1 cut(s) 412
BseMII CTCAG 1 cut(s) 19
BseNI ACTGG 2 cut(s) 207, 207
BseRI GAGGAG 3 cut(s) 875, 1304, 1505
BseXI GCAGC 4 cut(s) 176, 344, 1249, 1331
BseYI CCCAGC 2 cut(s) 122, 126
BshFI GGCC 4 cut(s) 206, 479, 885, 920
BshNI GGYRCC 1 cut(s) 312
BsiHKAI GWGCWC 1 cut(s) 1371
BsiSI CCGG 7 cut(s) 113, 310, 473, 887, 1143, 1202, 1307
BslI CCNNNNNNNGG 4 cut(s) 127, 202, 322, 424
BsmAI GTCTC 4 cut(s) 137, 578, 601, 865
BsmI GAATGC 4 cut(s) 715, 790, 1000, 1246
BsnI GGCC 4 cut(s) 206, 479, 885, 920
Bso31I GGTCTC 1 cut(s) 137
Bsp1286I GDGCHC 1 cut(s) 1371
Bsp13I TCCGGA 1 cut(s) 472
Bsp143I GATC 1 cut(s) 553
Bsp19I CCATGG 1 cut(s) 489
BspACI CCGC 3 cut(s) 323, 664, 689
BspANI GGCC 4 cut(s) 206, 479, 885, 920
BspCNI CTCAG 1 cut(s) 18
BspEI TCCGGA 1 cut(s) 472
BspLI GGNNCC 4 cut(s) 14, 314, 416, 1423
BspMAI CTGCAG 1 cut(s) 1349
BspPI GGATC 1 cut(s) 561
BspT107I GGYRCC 1 cut(s) 312
BspTI CTTAAG 1 cut(s) 1151
BspTNI GGTCTC 1 cut(s) 137
BsrBI CCGCTC 1 cut(s) 664
BsrDI GCAATG 1 cut(s) 412
BsrI ACTGG 2 cut(s) 207, 207
BssECI CCNNGG 4 cut(s) 96, 489, 1050, 1518
BssMI GATC 1 cut(s) 553
BssT1I CCWWGG 3 cut(s) 489, 1050, 1518
Bst2UI CCWGG 1 cut(s) 419
Bst4CI ACNGT 2 cut(s) 374, 1526
Bst6I CTCTTC 2 cut(s) 1251, 1349
BstAFI CTTAAG 1 cut(s) 1151
BstAPI GCANNNNNTGC 1 cut(s) 984
BstBAI YACGTR 1 cut(s) 1442
BstC8I GCNNGC 9 cut(s) 741, 985, 989, 1023, 1240, 1244, 1304, 1477, 1608
BstDEI CTNAG 3 cut(s) 5, 594, 962
BstDSI CCRYGG 1 cut(s) 489
BstF5I GGATG 7 cut(s) 192, 895, 1162, 1210, 1315, 1365, 1452
BstHHI GCGC 1 cut(s) 1432
BstKTI GATC 1 cut(s) 556
BstMAI GTCTC 4 cut(s) 137, 578, 601, 865
BstMBI GATC 1 cut(s) 553
BstMWI GCNNNNNNNGC 6 cut(s) 10, 329, 338, 644, 749, 984
BstNI CCWGG 1 cut(s) 419
BstNSI RCATGY 2 cut(s) 1025, 1393
BstSCI CCNGG 3 cut(s) 308, 417, 885
BstSFI CTRYAG 1 cut(s) 1345
BstV1I GCAGC 4 cut(s) 176, 344, 1249, 1331
BstXI CCANNNNNNTGG 1 cut(s) 1057
BsuRI GGCC 4 cut(s) 206, 479, 885, 920
BtgI CCRYGG 1 cut(s) 489
BtsCI GGATG 7 cut(s) 192, 895, 1162, 1210, 1315, 1365, 1452
BtsIMutI CAGTG 1 cut(s) 200
Cac8I GCNNGC 9 cut(s) 741, 985, 989, 1023, 1240, 1244, 1304, 1477, 1608
CfoI GCGC 1 cut(s) 1432
Cfr13I GGNCC 3 cut(s) 115, 415, 884
CseI GACGC 1 cut(s) 1424
Csp6I GTAC 4 cut(s) 313, 352, 1439, 1527
CviAII CATG 6 cut(s) 490, 658, 812, 1022, 1180, 1390
CviQI GTAC 4 cut(s) 313, 352, 1439, 1527
DdeI CTNAG 3 cut(s) 5, 594, 962
DpnI GATC 1 cut(s) 555
DpnII GATC 1 cut(s) 553
DrdI GACNNNNNNGTC 1 cut(s) 188
DseDI GACNNNNNNGTC 1 cut(s) 188
EaeI YGGCCR 1 cut(s) 204
Eam1104I CTCTTC 2 cut(s) 1251, 1349
EarI CTCTTC 2 cut(s) 1251, 1349
EciI GGCGGA 1 cut(s) 338
Eco130I CCWWGG 3 cut(s) 489, 1050, 1518
Eco147I AGGCCT 2 cut(s) 479, 920
Eco31I GGTCTC 1 cut(s) 137
Eco47I GGWCC 2 cut(s) 115, 415
Eco57I CTGAAG 2 cut(s) 357, 1298
EcoO109I RGGNCCY 1 cut(s) 415
EcoRII CCWGG 1 cut(s) 417
EcoT14I CCWWGG 3 cut(s) 489, 1050, 1518
EcoT22I ATGCAT 2 cut(s) 715, 1023
ErhI CCWWGG 3 cut(s) 489, 1050, 1518
FaeI CATG 6 cut(s) 493, 661, 815, 1025, 1183, 1393
FatI CATG 6 cut(s) 489, 657, 811, 1021, 1179, 1389
Fnu4HI GCNGC 5 cut(s) 165, 333, 690, 1263, 1345
FokI GGATG 7 cut(s) 179, 902, 1169, 1217, 1322, 1372, 1459
Fsp4HI GCNGC 5 cut(s) 165, 333, 690, 1263, 1345
FspBI CTAG 2 cut(s) 846, 1544
GlaI GCGC 1 cut(s) 1431
GluI GCNGC 5 cut(s) 165, 333, 690, 1263, 1345
GsaI CCCAGC 2 cut(s) 126, 130
HaeIII GGCC 4 cut(s) 206, 479, 885, 920
HapII CCGG 7 cut(s) 113, 310, 473, 887, 1143, 1202, 1307
HgaI GACGC 1 cut(s) 1424
HhaI GCGC 1 cut(s) 1432
Hin1II CATG 6 cut(s) 493, 661, 815, 1025, 1183, 1393
Hin6I GCGC 1 cut(s) 1430
HinP1I GCGC 1 cut(s) 1430
HindIII AAGCTT 1 cut(s) 750
HinfI GANTC 4 cut(s) 107, 297, 770, 1295
HpaII CCGG 7 cut(s) 113, 310, 473, 887, 1143, 1202, 1307
HphI GGTGA 3 cut(s) 102, 227, 730
Hpy166II GTNNAC 1 cut(s) 1463
Hpy188I TCNGA 5 cut(s) 8, 268, 671, 705, 1317
Hpy188III TCNNGA 7 cut(s) 142, 170, 301, 473, 1097, 1163, 1642
Hpy8I GTNNAC 1 cut(s) 1463
Hpy99I CGWCG 7 cut(s) 176, 179, 182, 185, 278, 453, 1418
HpyCH4III ACNGT 2 cut(s) 374, 1526
HpyCH4IV ACGT 4 cut(s) 448, 578, 1441, 1625
HpyF10VI GCNNNNNNNGC 6 cut(s) 10, 329, 338, 644, 749, 984
HpyF3I CTNAG 3 cut(s) 5, 594, 962
HpySE526I ACGT 4 cut(s) 448, 578, 1441, 1625
Hsp92II CATG 6 cut(s) 493, 661, 815, 1025, 1183, 1393
HspAI GCGC 1 cut(s) 1430
Kpn2I TCCGGA 1 cut(s) 472
KpnI GGTACC 1 cut(s) 316
Kzo9I GATC 1 cut(s) 553
LmnI GCTCC 5 cut(s) 18, 33, 172, 661, 1484
Lsp1109I GCAGC 4 cut(s) 176, 344, 1249, 1331
LweI GCATC 3 cut(s) 297, 475, 1195
MaeI CTAG 2 cut(s) 846, 1544
MaeII ACGT 4 cut(s) 448, 578, 1441, 1625
MaeIII GTNAC 5 cut(s) 65, 108, 574, 929, 1000
MalI GATC 1 cut(s) 555
MbiI CCGCTC 1 cut(s) 664
MboI GATC 1 cut(s) 553
MboII GAAGA 8 cut(s) 130, 461, 1268, 1291, 1348, 1366, 1573, 1591
MhlI GDGCHC 1 cut(s) 1371
MlsI TGGCCA 1 cut(s) 206
MluCI AATT 3 cut(s) 517, 558, 1550
MluNI TGGCCA 1 cut(s) 206
MlyI GAGTC 1 cut(s) 116
MmeI TCCRAC 3 cut(s) 324, 561, 816
Mox20I TGGCCA 1 cut(s) 206
Mph1103I ATGCAT 2 cut(s) 715, 1023
MroI TCCGGA 1 cut(s) 472
MscI TGGCCA 1 cut(s) 206
MseI TTAA 6 cut(s) 74, 543, 765, 798, 1152, 1395
MslI CAYNNNNRTG 2 cut(s) 54, 704
Msp20I TGGCCA 1 cut(s) 206
MspA1I CMGCKG 2 cut(s) 126, 335
MspCI CTTAAG 1 cut(s) 1151
MspI CCGG 7 cut(s) 113, 310, 473, 887, 1143, 1202, 1307
MspR9I CCNGG 3 cut(s) 310, 419, 887
Mva1269I GAATGC 4 cut(s) 715, 790, 1000, 1246
MvaI CCWGG 1 cut(s) 419
MwoI GCNNNNNNNGC 6 cut(s) 10, 329, 338, 644, 749, 984
NciI CCSGG 2 cut(s) 310, 887
NcoI CCATGG 1 cut(s) 489
NdeII GATC 1 cut(s) 553
NlaIII CATG 6 cut(s) 493, 661, 815, 1025, 1183, 1393
NlaIV GGNNCC 4 cut(s) 14, 314, 416, 1423
NmeAIII GCCGAG 1 cut(s) 130
NmuCI GTSAC 4 cut(s) 108, 574, 929, 1000
NsiI ATGCAT 2 cut(s) 715, 1023
NspI RCATGY 2 cut(s) 1025, 1393
PaeI GCATGC 1 cut(s) 1025
PceI AGGCCT 2 cut(s) 479, 920
PciI ACATGT 1 cut(s) 1389
PcsI WCGNNNNNNNCGW 3 cut(s) 168, 180, 186
PctI GAATGC 4 cut(s) 715, 790, 1000, 1246
PfeI GAWTC 3 cut(s) 297, 770, 1295
PflFI GACNNNGTC 1 cut(s) 188
PkrI GCNGC 5 cut(s) 166, 334, 691, 1264, 1346
PleI GAGTC 1 cut(s) 115
PpsI GAGTC 1 cut(s) 115
Ppu21I YACGTR 1 cut(s) 1442
PpuMI RGGWCCY 1 cut(s) 415
PscI ACATGT 1 cut(s) 1389
Psp5II RGGWCCY 1 cut(s) 415
Psp6I CCWGG 1 cut(s) 417
PspFI CCCAGC 2 cut(s) 122, 126
PspGI CCWGG 1 cut(s) 417
PspN4I GGNNCC 4 cut(s) 14, 314, 416, 1423
PspPI GGNCC 3 cut(s) 115, 415, 884
PspPPI RGGWCCY 1 cut(s) 415
PstI CTGCAG 1 cut(s) 1349
PsyI GACNNNGTC 1 cut(s) 188
PvuII CAGCTG 2 cut(s) 126, 335
RsaI GTAC 4 cut(s) 314, 353, 1440, 1528
RsaNI GTAC 4 cut(s) 313, 352, 1439, 1527
RseI CAYNNNNRTG 2 cut(s) 54, 704
SaqAI TTAA 6 cut(s) 74, 543, 765, 798, 1152, 1395
SatI GCNGC 5 cut(s) 165, 333, 690, 1263, 1345
Sau3AI GATC 1 cut(s) 553
Sau96I GGNCC 3 cut(s) 115, 415, 884
SchI GAGTC 1 cut(s) 116
ScrFI CCNGG 3 cut(s) 310, 419, 887
SduI GDGCHC 1 cut(s) 1371
SfaNI GCATC 3 cut(s) 297, 475, 1195
SfcI CTRYAG 1 cut(s) 1345
SinI GGWCC 2 cut(s) 115, 415
SmiMI CAYNNNNRTG 2 cut(s) 54, 704
SmlI CTYRAG 3 cut(s) 23, 1151, 1268
SmoI CTYRAG 3 cut(s) 23, 1151, 1268
SphI GCATGC 1 cut(s) 1025
Sse9I AATT 3 cut(s) 517, 558, 1550
SseBI AGGCCT 2 cut(s) 479, 920
SsiI CCGC 3 cut(s) 323, 664, 689
SspMI CTAG 2 cut(s) 846, 1544
StuI AGGCCT 2 cut(s) 479, 920
StyD4I CCNGG 3 cut(s) 308, 417, 885
StyI CCWWGG 3 cut(s) 489, 1050, 1518
TaaI ACNGT 2 cut(s) 374, 1526
TaiI ACGT 4 cut(s) 451, 581, 1444, 1628
TaqI TCGA 6 cut(s) 141, 216, 282, 451, 642, 1413
TasI AATT 3 cut(s) 517, 558, 1550
TatI WGTACW 1 cut(s) 1526
TauI GCSGC 1 cut(s) 692
TfiI GAWTC 3 cut(s) 297, 770, 1295
Tru1I TTAA 6 cut(s) 74, 543, 765, 798, 1152, 1395
Tru9I TTAA 6 cut(s) 74, 543, 765, 798, 1152, 1395
TscAI CASTG 1 cut(s) 207
TseFI GTSAC 4 cut(s) 108, 574, 929, 1000
TseI GCWGC 4 cut(s) 164, 332, 1262, 1344
Tsp45I GTSAC 4 cut(s) 108, 574, 929, 1000
TspDTI ATGAA 5 cut(s) 722, 969, 986, 1091, 1376
TspRI CASTG 1 cut(s) 207
Tth111I GACNNNGTC 1 cut(s) 188
Vha464I CTTAAG 1 cut(s) 1151
VpaK11BI GGWCC 2 cut(s) 115, 415
XapI RAATTY 1 cut(s) 517
XceI RCATGY 2 cut(s) 1025, 1393
XspI CTAG 2 cut(s) 846, 1544
Zsp2I ATGCAT 2 cut(s) 715, 1023
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.