Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0006285

Physical Location & Seq

Genomic Coordinates Forward (+)

63328790 .. 63330421

Gene Structure 1632 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000010131

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1632 bp

ATGCTCACAAGGTTCCACAATCTCAGACTCCATTCGACTTCAAAAACCCACATCAATGCCCTGCGTTACTTCTTAAACCCCCTATGCACCACAACCGAGGTCGCCGAGTCACTCGAGCTTCCAAGCTGGGTCAAGTTCTTCGACACCAACCACCCAAAACACGCACCTTCCGACGACGACGACGACTTCGTCATCCCTTCACTGGCCAATTGGGTCGAAACCCACAACCTAAACCACCCCACCAAACCTCCCAAGCCCTCAACTTCTGATACCGACGACCTCGAAAGCATCAGTAGAATCTTGAAAATCCGGTACCCATCGCTGGAAAATGCAGCTGAAGCCTTGGAAAGGTACGATTTTGAGCTGTCAAACGGTTTGGTGCAACAGGTTTTGATGAGGTTTAGCAATGATTGGGTTCCCGCGTTGGGGTTTTTCATTTGCGCAAAACGTCGAACAGATTATAGGCATCTTCCTGAGGCCTATAACCCCATGGTTGATGTATTGGGAAAGTCCAAGAATTTTGACCTTATTTGGGATTTTGTTGAGGAAATGGATCAAATTGGAGATGGGTATGTGACGTTGGAGACAATGACAAAGGTGTTTAGGAGACTTGCAAAGGGTGGTAAGCACCAAGAGGCAATCGAGGCGTTTCGGGGCATGGAGCGATTCGGATTGAGCAAAGATGTTGTGGCATTGAACACTCTACTGAATGCATTGGTGAAGGAGAGAAGCGTTGAGCTTGCCCAAGAAGCTTTCTTGGAGTTTAAGGAATCTATACCTGTGAATGCTCACAGCTTTAATGTTTTGATACATGGGTGGTGTAAGAATAGGAAGTTGGACATTGCTAGGAACACAATGGAGAAGATGGAGAGACACGGGTTTCGCCCGGATGTGTTCTCTTATACTTGTTTGGTTGAGGCCTATTGTAGTGACAAGGATTTTCGCAAAGTTGATGAAGTTCTTAGTGAAATGAAGGGCAAGGCTTCCGAGCCGAATGCTGTGACATACACCATCGTAATGCATGCTTTGGGGACGGCGAGAGAGATAACCAAGGCTTTGGAGGTTTATGAGTTGATGAAAGGGAATGGTGTTGTTCCTGATGTTTCGTTTTACAGCTCTTTGATTTACATTCTTGGTAAAGCCGGCAGGCTTACGGATGTTCAAAAAGTGGTTGAGGATATGACAAAGCAGGGTGTAAAACCGGACGCTATGACCTATAACACCCTGATTTCTTGTGCTTGCGAGCATTCGCAGGAAGAGGTTGCTCTCAAGTTGCTGAAGAAAATGGAGGAGGATTCGTGCAAGCCGGATGTTCAGACATATGCCCCGTTGTTGAAGATGTCCTACAGAAAGAAGAGGATGAAGGTGCTCTACTTTTTGTTAGACCACATGTTTAAGAATGACATTAGTATCGACGCTGGAACCTACGCGCTCTTGGTACGTGGGATGTGCAAGAATGGTAAACTCGAAAATGCTTGCTTCTTCTTTGAGGAGATGGCATTGAAGGGTTTTGTTCCCAAGGACAGTACATACAAGATGTTGCTAGAGGAATTGCAGGGGAAGAATATGGAGAAAGAGAAGAAACATATTGAGAAGTTGATGTTGCAGGCAAAAGAGCAAGGAAACGTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

544

Amino Acids

62.26

Weight (kDa)

6.38

Isoelectric Point (pI)

35.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_long	PF17177	256 - 384	1.4e-10	Pentacotripeptide-repeat region of PRORP
PPR_2	PF13041	262 - 309	1.1e-12	PPR repeat family
PPR_3	PF13812	286 - 344	6e-11	Pentatricopeptide repeat domain
PPR_2	PF13041	296 - 343	7e-13	PPR repeat family
TPR_24	PF23276	320 - 428	1.5e-07	Fungal tetratrico peptide repeats
PPR_3	PF13812	330 - 380	6.6e-06	Pentatricopeptide repeat domain
PPR_2	PF13041	334 - 375	8.3e-07	PPR repeat family
PPR_2	PF13041	366 - 414	1.2e-10	PPR repeat family
PPR_long	PF17177	371 - 514	1.6e-10	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	389 - 447	2.8e-12	Pentatricopeptide repeat domain
PPR_1	PF12854	398 - 430	1.8e-07	PPR repeat
PPR_2	PF13041	401 - 446	3.5e-11	PPR repeat family
PPR_1	PF12854	469 - 499	3e-06	PPR repeat
PPR_2	PF13041	473 - 517	8.1e-07	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0006285)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22670
fragaria_vesca	FvH4_4g00721
malus_domestica	MD13G1197300.v1.1
prunus_persica	Prupe.1G018400_v2.0.a1
pyrus_communis	pycom13g17020
rosa_chinensis	RchiOBHm_Chr1g0322101 RchiOBHm_Chr4g0386451
rosa_laevigata	RLG00000010131 RLG00000010157 RLG00000010161
rosa_multiflora	Rmu_co8274927.1_g000001 Rmu_sc0001942.1_g000008 Rmu_sc0001942.1_g000027 Rmu_sc0001942.1_g000051 Rmu_sc0002785.1_g000008 Rmu_sc0003786.1_g000023 Rmu_sc0006648.1_g000016 Rmu_sc0036937.1_g000001 Rmu_ssc0000272.1_g000008 Rmu_ssc0000272.1_g000009
rosa_roxburghii	Rroxscaffold_5G00333960 Rroxscaffold_6G00392780
rosa_samantha	Rh1AG049600 Rh4BG009300 Rh4CG014300 Rh4DG010100
rosa_wichuraiana	Rw4G000030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	188
Acc16I	TGCGCA	1 cut(s)	442
Acc65I	GGTACC	1 cut(s)	312
AccB1I	GGYRCC	1 cut(s)	312
AccII	CGCG	2 cut(s)	422, 1430
AciI	CCGC	1 cut(s)	420
AclWI	GGATC	1 cut(s)	561
AcoI	YGGCCR	1 cut(s)	204
AcsI	RAATTY	1 cut(s)	517
AcuI	CTGAAG	2 cut(s)	357, 1298
AfaI	GTAC	4 cut(s)	314, 353, 1440, 1528
AfiI	CCNNNNNNNGG	6 cut(s)	202, 322, 348, 425, 426, 532
AflIII	ACRYGT	1 cut(s)	1389
AgsI	TTSAA	6 cut(s)	42, 304, 697, 1163, 1336, 1504
AjuI	GAANNNNNNNTTGG	2 cut(s)	818, 850
AluBI	AGCT	8 cut(s)	118, 126, 335, 364, 739, 752, 795, 1116
AluI	AGCT	8 cut(s)	118, 126, 335, 364, 739, 752, 795, 1116
Alw21I	GWGCWC	1 cut(s)	1371
Alw26I	GTCTC	3 cut(s)	578, 601, 865
AlwI	GGATC	1 cut(s)	561
Ama87I	CYCGRG	1 cut(s)	113
AoxI	GGCC	3 cut(s)	204, 477, 918
ApeKI	GCWGC	1 cut(s)	332
ApoI	RAATTY	1 cut(s)	517
ArsI	GACNNNNNNTTYG	4 cut(s)	170, 202, 864, 896
Asp718I	GGTACC	1 cut(s)	312
AspLEI	GCGC	2 cut(s)	443, 1432
AsuC2I	CCSGG	1 cut(s)	887
AsuHPI	GGTGA	1 cut(s)	730
AvaI	CYCGRG	1 cut(s)	113
AxyI	CCTNAGG	1 cut(s)	474
BaeI	ACNNNNGTAYC	4 cut(s)	800, 833, 1393, 1426
BalI	TGGCCA	1 cut(s)	206
BanI	GGYRCC	1 cut(s)	312
BarI	GAAGNNNNNNTAC	4 cut(s)	1328, 1355, 1360, 1387
Bbv12I	GWGCWC	1 cut(s)	1371
BbvI	GCAGC	1 cut(s)	344
BccI	CCATC	5 cut(s)	325, 560, 859, 1019, 1489
BceAI	ACGGC	1 cut(s)	1050
BcgI	CGANNNNNNTGC	2 cut(s)	977, 1011
BcnI	CCSGG	1 cut(s)	887
BcoDI	GTCTC	3 cut(s)	578, 601, 865
BfaI	CTAG	2 cut(s)	846, 1544
BfmI	CTRYAG	1 cut(s)	1345
BisI	GCNGC	1 cut(s)	333
BlsI	GCNGC	1 cut(s)	334
Bme1390I	CCNGG	1 cut(s)	887
BmeT110I	CYCGRG	1 cut(s)	113
BmiI	GGNNCC	4 cut(s)	14, 314, 417, 1423
BmrFI	CCNGG	1 cut(s)	887
BmsI	GCATC	2 cut(s)	297, 475
BpuEI	CTTGAG	1 cut(s)	1253
BpuMI	CCSGG	1 cut(s)	887
BsaAI	YACGTR	1 cut(s)	1442
BsaJI	CCNNGG	5 cut(s)	96, 342, 489, 1050, 1518
BsaWI	WCCGGW	2 cut(s)	309, 1201
BsaXI	ACNNNNNCTCC	4 cut(s)	232, 262, 1283, 1313
Bsc4I	CCNNNNNNNGG	6 cut(s)	202, 322, 348, 425, 426, 532
Bse118I	RCCGGY	1 cut(s)	1142
Bse1I	ACTGG	1 cut(s)	207
Bse21I	CCTNAGG	1 cut(s)	474
Bse3DI	GCAATG	2 cut(s)	412, 840
BseDI	CCNNGG	5 cut(s)	96, 342, 489, 1050, 1518
BseGI	GGATG	6 cut(s)	192, 895, 1162, 1315, 1365, 1452
BseLI	CCNNNNNNNGG	6 cut(s)	202, 322, 348, 425, 426, 532
BseMI	GCAATG	2 cut(s)	412, 840
BseMII	CTCAG	2 cut(s)	37, 465
BseNI	ACTGG	1 cut(s)	207
BseRI	GAGGAG	2 cut(s)	1304, 1505
BseXI	GCAGC	1 cut(s)	344
BseYI	CCCAGC	1 cut(s)	126
Bsh1236I	CGCG	2 cut(s)	422, 1430
BshFI	GGCC	3 cut(s)	206, 479, 920
BshNI	GGYRCC	1 cut(s)	312
BsiHKAI	GWGCWC	1 cut(s)	1371
BsiHKCI	CYCGRG	1 cut(s)	113
BsiSI	CCGG	5 cut(s)	310, 887, 1143, 1202, 1307
BslFI	GGGAC	1 cut(s)	1045
BslI	CCNNNNNNNGG	6 cut(s)	202, 322, 348, 425, 426, 532
BsmAI	GTCTC	3 cut(s)	578, 601, 865
BsmFI	GGGAC	1 cut(s)	1045
BsmI	GAATGC	4 cut(s)	715, 790, 1000, 1246
BsnI	GGCC	3 cut(s)	206, 479, 920
BsoBI	CYCGRG	1 cut(s)	113
Bsp1286I	GDGCHC	1 cut(s)	1371
Bsp143I	GATC	1 cut(s)	553
Bsp19I	CCATGG	1 cut(s)	489
BspACI	CCGC	1 cut(s)	420
BspANI	GGCC	3 cut(s)	206, 479, 920
BspCNI	CTCAG	2 cut(s)	36, 466
BspFNI	CGCG	2 cut(s)	422, 1430
BspLI	GGNNCC	4 cut(s)	14, 314, 417, 1423
BspPI	GGATC	1 cut(s)	561
BspT107I	GGYRCC	1 cut(s)	312
BsrDI	GCAATG	2 cut(s)	412, 840
BsrFI	RCCGGY	1 cut(s)	1142
BsrI	ACTGG	1 cut(s)	207
BssAI	RCCGGY	1 cut(s)	1142
BssECI	CCNNGG	5 cut(s)	96, 342, 489, 1050, 1518
BssMI	GATC	1 cut(s)	553
BssT1I	CCWWGG	4 cut(s)	342, 489, 1050, 1518
Bst4CI	ACNGT	2 cut(s)	374, 1526
Bst6I	CTCTTC	2 cut(s)	1251, 1349
BstBAI	YACGTR	1 cut(s)	1442
BstC8I	GCNNGC	9 cut(s)	741, 1023, 1144, 1148, 1240, 1244, 1304, 1477, 1608
BstDEI	CTNAG	3 cut(s)	23, 474, 962
BstDSI	CCRYGG	1 cut(s)	489
BstENI	CCTNNNNNAGG	1 cut(s)	346
BstF5I	GGATG	6 cut(s)	192, 895, 1162, 1315, 1365, 1452
BstFNI	CGCG	2 cut(s)	422, 1430
BstHHI	GCGC	2 cut(s)	443, 1432
BstKTI	GATC	1 cut(s)	556
BstMAI	GTCTC	3 cut(s)	578, 601, 865
BstMBI	GATC	1 cut(s)	553
BstMWI	GCNNNNNNNGC	3 cut(s)	338, 644, 749
BstNSI	RCATGY	2 cut(s)	1025, 1393
BstSCI	CCNGG	1 cut(s)	885
BstSFI	CTRYAG	1 cut(s)	1345
BstUI	CGCG	2 cut(s)	422, 1430
BstV1I	GCAGC	1 cut(s)	344
BstXI	CCANNNNNNTGG	1 cut(s)	1057
Bsu36I	CCTNAGG	1 cut(s)	474
BsuRI	GGCC	3 cut(s)	206, 479, 920
BtgI	CCRYGG	1 cut(s)	489
BtgZI	GCGATG	1 cut(s)	303
BtsCI	GGATG	6 cut(s)	192, 895, 1162, 1315, 1365, 1452
BtsIMutI	CAGTG	1 cut(s)	200
Cac8I	GCNNGC	9 cut(s)	741, 1023, 1144, 1148, 1240, 1244, 1304, 1477, 1608
CfoI	GCGC	2 cut(s)	443, 1432
Cfr10I	RCCGGY	1 cut(s)	1142
CseI	GACGC	2 cut(s)	1214, 1424
Csp6I	GTAC	4 cut(s)	313, 352, 1439, 1527
CviAII	CATG	5 cut(s)	490, 658, 812, 1022, 1390
CviQI	GTAC	4 cut(s)	313, 352, 1439, 1527
DdeI	CTNAG	3 cut(s)	23, 474, 962
DpnI	GATC	1 cut(s)	555
DpnII	GATC	1 cut(s)	553
DrdI	GACNNNNNNGTC	1 cut(s)	188
DseDI	GACNNNNNNGTC	1 cut(s)	188
EaeI	YGGCCR	1 cut(s)	204
Eam1104I	CTCTTC	2 cut(s)	1251, 1349
EarI	CTCTTC	2 cut(s)	1251, 1349
Eco130I	CCWWGG	4 cut(s)	342, 489, 1050, 1518
Eco147I	AGGCCT	2 cut(s)	479, 920
Eco57I	CTGAAG	2 cut(s)	357, 1298
Eco81I	CCTNAGG	1 cut(s)	474
Eco88I	CYCGRG	1 cut(s)	113
EcoNI	CCTNNNNNAGG	1 cut(s)	346
EcoT14I	CCWWGG	4 cut(s)	342, 489, 1050, 1518
EcoT22I	ATGCAT	2 cut(s)	715, 1023
ErhI	CCWWGG	4 cut(s)	342, 489, 1050, 1518
FaeI	CATG	5 cut(s)	493, 661, 815, 1025, 1393
FaqI	GGGAC	1 cut(s)	1045
FatI	CATG	5 cut(s)	489, 657, 811, 1021, 1389
FauI	CCCGC	1 cut(s)	427
FauNDI	CATATG	1 cut(s)	1321
Fnu4HI	GCNGC	1 cut(s)	333
FokI	GGATG	6 cut(s)	179, 902, 1169, 1322, 1372, 1459
Fsp4HI	GCNGC	1 cut(s)	333
FspBI	CTAG	2 cut(s)	846, 1544
FspI	TGCGCA	1 cut(s)	442
GlaI	GCGC	2 cut(s)	442, 1431
GluI	GCNGC	1 cut(s)	333
GsaI	CCCAGC	1 cut(s)	130
HaeIII	GGCC	3 cut(s)	206, 479, 920
HapII	CCGG	5 cut(s)	310, 887, 1143, 1202, 1307
HgaI	GACGC	2 cut(s)	1214, 1424
HhaI	GCGC	2 cut(s)	443, 1432
Hin1II	CATG	5 cut(s)	493, 661, 815, 1025, 1393
Hin6I	GCGC	2 cut(s)	441, 1430
HinP1I	GCGC	2 cut(s)	441, 1430
HindIII	AAGCTT	1 cut(s)	750
HinfI	GANTC	6 cut(s)	27, 107, 297, 666, 770, 1295
HpaII	CCGG	5 cut(s)	310, 887, 1143, 1202, 1307
HphI	GGTGA	1 cut(s)	730
Hpy166II	GTNNAC	1 cut(s)	1463
Hpy188I	TCNGA	6 cut(s)	26, 172, 268, 671, 988, 1317
Hpy188III	TCNNGA	3 cut(s)	301, 473, 1097
Hpy8I	GTNNAC	1 cut(s)	1463
Hpy99I	CGWCG	7 cut(s)	176, 179, 182, 185, 278, 453, 1418
HpyAV	CCTTC	6 cut(s)	177, 207, 715, 967, 1357, 1498
HpyCH4III	ACNGT	2 cut(s)	374, 1526
HpyCH4IV	ACGT	4 cut(s)	448, 578, 1441, 1626
HpyF10VI	GCNNNNNNNGC	3 cut(s)	338, 644, 749
HpyF3I	CTNAG	3 cut(s)	23, 474, 962
HpySE526I	ACGT	4 cut(s)	448, 578, 1441, 1626
Hsp92II	CATG	5 cut(s)	493, 661, 815, 1025, 1393
HspAI	GCGC	2 cut(s)	441, 1430
KpnI	GGTACC	1 cut(s)	316
KroI	GCCGGC	1 cut(s)	1142
KroNI	GCCGGC	1 cut(s)	1144
Kzo9I	GATC	1 cut(s)	553
LmnI	GCTCC	1 cut(s)	661
Lsp1109I	GCAGC	1 cut(s)	344
LweI	GCATC	2 cut(s)	297, 475
MaeI	CTAG	2 cut(s)	846, 1544
MaeII	ACGT	4 cut(s)	448, 578, 1441, 1626
MaeIII	GTNAC	5 cut(s)	65, 108, 574, 929, 1000
MalI	GATC	1 cut(s)	555
MboI	GATC	1 cut(s)	553
MfeI	CAATTG	1 cut(s)	208
MhlI	GDGCHC	1 cut(s)	1371
MlsI	TGGCCA	1 cut(s)	206
MluCI	AATT	4 cut(s)	208, 517, 558, 1550
MluNI	TGGCCA	1 cut(s)	206
MlyI	GAGTC	2 cut(s)	21, 116
MmeI	TCCRAC	3 cut(s)	195, 561, 816
Mox20I	TGGCCA	1 cut(s)	206
Mph1103I	ATGCAT	2 cut(s)	715, 1023
MroNI	GCCGGC	1 cut(s)	1142
MscI	TGGCCA	1 cut(s)	206
MseI	TTAA	4 cut(s)	74, 765, 798, 1395
MslI	CAYNNNNRTG	2 cut(s)	54, 1016
Msp20I	TGGCCA	1 cut(s)	206
MspA1I	CMGCKG	1 cut(s)	335
MspI	CCGG	5 cut(s)	310, 887, 1143, 1202, 1307
MspR9I	CCNGG	1 cut(s)	887
MunI	CAATTG	1 cut(s)	208
Mva1269I	GAATGC	4 cut(s)	715, 790, 1000, 1246
MvnI	CGCG	2 cut(s)	422, 1430
MwoI	GCNNNNNNNGC	3 cut(s)	338, 644, 749
NaeI	GCCGGC	1 cut(s)	1144
NciI	CCSGG	1 cut(s)	887
NcoI	CCATGG	1 cut(s)	489
NdeI	CATATG	1 cut(s)	1321
NdeII	GATC	1 cut(s)	553
NgoMIV	GCCGGC	1 cut(s)	1142
NlaIII	CATG	5 cut(s)	493, 661, 815, 1025, 1393
NlaIV	GGNNCC	4 cut(s)	14, 314, 417, 1423
NmeAIII	GCCGAG	1 cut(s)	130
NmuCI	GTSAC	4 cut(s)	108, 574, 929, 1000
NsbI	TGCGCA	1 cut(s)	442
NsiI	ATGCAT	2 cut(s)	715, 1023
NspI	RCATGY	2 cut(s)	1025, 1393
PaeI	GCATGC	1 cut(s)	1025
PaeR7I	CTCGAG	1 cut(s)	113
PceI	AGGCCT	2 cut(s)	479, 920
PciI	ACATGT	1 cut(s)	1389
PcsI	WCGNNNNNNNCGW	3 cut(s)	168, 180, 186
PctI	GAATGC	4 cut(s)	715, 790, 1000, 1246
PdiI	GCCGGC	1 cut(s)	1144
PfeI	GAWTC	4 cut(s)	297, 666, 770, 1295
PflFI	GACNNNGTC	1 cut(s)	188
PkrI	GCNGC	1 cut(s)	334
PleI	GAGTC	2 cut(s)	21, 115
PpsI	GAGTC	2 cut(s)	21, 115
Ppu21I	YACGTR	1 cut(s)	1442
PscI	ACATGT	1 cut(s)	1389
PspFI	CCCAGC	1 cut(s)	126
PspN4I	GGNNCC	4 cut(s)	14, 314, 417, 1423
PspXI	VCTCGAGB	1 cut(s)	113
PsyI	GACNNNGTC	1 cut(s)	188
PvuII	CAGCTG	1 cut(s)	335
RsaI	GTAC	4 cut(s)	314, 353, 1440, 1528
RsaNI	GTAC	4 cut(s)	313, 352, 1439, 1527
RseI	CAYNNNNRTG	2 cut(s)	54, 1016
SaqAI	TTAA	4 cut(s)	74, 765, 798, 1395
SatI	GCNGC	1 cut(s)	333
Sau3AI	GATC	1 cut(s)	553
SchI	GAGTC	2 cut(s)	21, 116
ScrFI	CCNGG	1 cut(s)	887
SduI	GDGCHC	1 cut(s)	1371
SfaNI	GCATC	2 cut(s)	297, 475
SfcI	CTRYAG	1 cut(s)	1345
Sfr274I	CTCGAG	1 cut(s)	113
SlaI	CTCGAG	1 cut(s)	113
SmiMI	CAYNNNNRTG	2 cut(s)	54, 1016
SmlI	CTYRAG	2 cut(s)	113, 1268
SmoI	CTYRAG	2 cut(s)	113, 1268
SphI	GCATGC	1 cut(s)	1025
Sse9I	AATT	4 cut(s)	208, 517, 558, 1550
SseBI	AGGCCT	2 cut(s)	479, 920
SsiI	CCGC	1 cut(s)	420
SspMI	CTAG	2 cut(s)	846, 1544
StuI	AGGCCT	2 cut(s)	479, 920
StyD4I	CCNGG	1 cut(s)	885
StyI	CCWWGG	4 cut(s)	342, 489, 1050, 1518
TaaI	ACNGT	2 cut(s)	374, 1526
TaiI	ACGT	4 cut(s)	451, 581, 1444, 1629
TaqI	TCGA	9 cut(s)	35, 114, 141, 216, 282, 451, 642, 1413, 1467
TasI	AATT	4 cut(s)	208, 517, 558, 1550
TatI	WGTACW	1 cut(s)	1526
TfiI	GAWTC	4 cut(s)	297, 666, 770, 1295
Tru1I	TTAA	4 cut(s)	74, 765, 798, 1395
Tru9I	TTAA	4 cut(s)	74, 765, 798, 1395
TscAI	CASTG	1 cut(s)	207
TseFI	GTSAC	4 cut(s)	108, 574, 929, 1000
TseI	GCWGC	1 cut(s)	332
Tsp45I	GTSAC	4 cut(s)	108, 574, 929, 1000
TspDTI	ATGAA	5 cut(s)	424, 969, 986, 1091, 1376
TspGWI	ACGGA	1 cut(s)	1169
TspRI	CASTG	1 cut(s)	207
Tth111I	GACNNNGTC	1 cut(s)	188
XagI	CCTNNNNNAGG	1 cut(s)	346
XapI	RAATTY	1 cut(s)	517
XceI	RCATGY	2 cut(s)	1025, 1393
XhoI	CTCGAG	1 cut(s)	113
XspI	CTAG	2 cut(s)	846, 1544
Zsp2I	ATGCAT	2 cut(s)	715, 1023

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.