Pentatricopeptide repeat-containing protein
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G22670 |
| fragaria_vesca | FvH4_4g00721 |
| malus_domestica | MD13G1197300.v1.1 |
| prunus_persica | Prupe.1G018400_v2.0.a1 |
| pyrus_communis | pycom13g17020 |
| rosa_chinensis | RchiOBHm_Chr1g0322101 RchiOBHm_Chr4g0386451 |
| rosa_laevigata | RLG00000010131 RLG00000010157 RLG00000010161 |
| rosa_multiflora | Rmu_co8274927.1_g000001 Rmu_sc0001942.1_g000008 Rmu_sc0001942.1_g000027 Rmu_sc0001942.1_g000051 Rmu_sc0002785.1_g000008 Rmu_sc0003786.1_g000023 Rmu_sc0006648.1_g000016 Rmu_sc0036937.1_g000001 Rmu_ssc0000272.1_g000008 Rmu_ssc0000272.1_g000009 |
| rosa_roxburghii | Rroxscaffold_5G00333960 Rroxscaffold_6G00392780 |
| rosa_samantha | Rh1AG049600 Rh4BG009300 Rh4CG014300 Rh4DG010100 |
| rosa_wichuraiana | Rw4G000030 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 1 cut(s) | 328 |
| AfaI | GTAC | 2 cut(s) | 162, 250 |
| AgsI | TTSAA | 2 cut(s) | 52, 226 |
| Alw21I | GWGCWC | 1 cut(s) | 87 |
| ApeKI | GCWGC | 1 cut(s) | 60 |
| AseI | ATTAAT | 1 cut(s) | 125 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 71, 103 |
| Bbv12I | GWGCWC | 1 cut(s) | 87 |
| BbvI | GCAGC | 1 cut(s) | 47 |
| BccI | CCATC | 1 cut(s) | 211 |
| BfaI | CTAG | 1 cut(s) | 266 |
| BfmI | CTRYAG | 1 cut(s) | 61 |
| BisI | GCNGC | 1 cut(s) | 61 |
| BlsI | GCNGC | 1 cut(s) | 62 |
| BmiI | GGNNCC | 1 cut(s) | 145 |
| BsaAI | YACGTR | 1 cut(s) | 164 |
| BsaJI | CCNNGG | 1 cut(s) | 240 |
| BsaXI | ACNNNNNCTCC | 3 cut(s) | 29, 185, 215 |
| BseDI | CCNNGG | 1 cut(s) | 240 |
| BseGI | GGATG | 3 cut(s) | 31, 81, 174 |
| BseRI | GAGGAG | 1 cut(s) | 227 |
| BseXI | GCAGC | 1 cut(s) | 47 |
| BsgI | GTGCAG | 1 cut(s) | 50 |
| BsiHKAI | GWGCWC | 1 cut(s) | 87 |
| BsiSI | CCGG | 1 cut(s) | 23 |
| Bsp1286I | GDGCHC | 1 cut(s) | 87 |
| BspACI | CCGC | 1 cut(s) | 328 |
| BspLI | GGNNCC | 1 cut(s) | 145 |
| BspMAI | CTGCAG | 1 cut(s) | 65 |
| BssECI | CCNNGG | 1 cut(s) | 240 |
| BssT1I | CCWWGG | 1 cut(s) | 240 |
| Bst4CI | ACNGT | 1 cut(s) | 248 |
| Bst6I | CTCTTC | 1 cut(s) | 65 |
| BstBAI | YACGTR | 1 cut(s) | 164 |
| BstC8I | GCNNGC | 3 cut(s) | 20, 199, 330 |
| BstDEI | CTNAG | 1 cut(s) | 113 |
| BstF5I | GGATG | 3 cut(s) | 31, 81, 174 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 28 |
| BstSFI | CTRYAG | 1 cut(s) | 61 |
| BstV1I | GCAGC | 1 cut(s) | 47 |
| BtsCI | GGATG | 3 cut(s) | 31, 81, 174 |
| Cac8I | GCNNGC | 3 cut(s) | 20, 199, 330 |
| CseI | GACGC | 1 cut(s) | 146 |
| Csp6I | GTAC | 2 cut(s) | 161, 249 |
| CviJI | RGCY | 1 cut(s) | 22 |
| CviKI_1 | RGCY | 1 cut(s) | 22 |
| CviQI | GTAC | 2 cut(s) | 161, 249 |
| DdeI | CTNAG | 1 cut(s) | 113 |
| Eam1104I | CTCTTC | 1 cut(s) | 65 |
| EarI | CTCTTC | 1 cut(s) | 65 |
| Eco130I | CCWWGG | 1 cut(s) | 240 |
| EcoT14I | CCWWGG | 1 cut(s) | 240 |
| ErhI | CCWWGG | 1 cut(s) | 240 |
| FaiI | YATR | 8 cut(s) | 37, 107, 109, 150, 253, 290, 309, 352 |
| FauI | CCCGC | 1 cut(s) | 321 |
| FauNDI | CATATG | 1 cut(s) | 107 |
| Fnu4HI | GCNGC | 1 cut(s) | 61 |
| FokI | GGATG | 3 cut(s) | 38, 88, 181 |
| Fsp4HI | GCNGC | 1 cut(s) | 61 |
| FspBI | CTAG | 1 cut(s) | 266 |
| GluI | GCNGC | 1 cut(s) | 61 |
| HapII | CCGG | 1 cut(s) | 23 |
| HgaI | GACGC | 1 cut(s) | 146 |
| HinfI | GANTC | 1 cut(s) | 11 |
| HpaII | CCGG | 1 cut(s) | 23 |
| Hpy166II | GTNNAC | 1 cut(s) | 185 |
| Hpy8I | GTNNAC | 1 cut(s) | 185 |
| Hpy99I | CGWCG | 1 cut(s) | 140 |
| HpyAV | CCTTC | 3 cut(s) | 73, 214, 220 |
| HpyCH4III | ACNGT | 1 cut(s) | 248 |
| HpyCH4IV | ACGT | 2 cut(s) | 163, 348 |
| HpyCH4V | TGCA | 5 cut(s) | 18, 31, 63, 174, 277 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 28 |
| HpyF3I | CTNAG | 1 cut(s) | 113 |
| HpySE526I | ACGT | 2 cut(s) | 163, 348 |
| LmnI | GCTCC | 1 cut(s) | 206 |
| LpnPI | CCDG | 3 cut(s) | 36, 126, 263 |
| Lsp1109I | GCAGC | 1 cut(s) | 47 |
| MaeI | CTAG | 1 cut(s) | 266 |
| MaeII | ACGT | 2 cut(s) | 163, 348 |
| MboII | GAAGA | 4 cut(s) | 64, 82, 295, 313 |
| MhlI | GDGCHC | 1 cut(s) | 87 |
| MluCI | AATT | 2 cut(s) | 126, 272 |
| MnlI | CCTC | 3 cut(s) | 66, 205, 262 |
| MseI | TTAA | 1 cut(s) | 125 |
| MspI | CCGG | 1 cut(s) | 23 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 28 |
| NdeI | CATATG | 1 cut(s) | 107 |
| NlaIV | GGNNCC | 1 cut(s) | 145 |
| PfeI | GAWTC | 1 cut(s) | 11 |
| PkrI | GCNGC | 1 cut(s) | 62 |
| Ppu21I | YACGTR | 1 cut(s) | 164 |
| PshBI | ATTAAT | 1 cut(s) | 125 |
| PspN4I | GGNNCC | 1 cut(s) | 145 |
| PstI | CTGCAG | 1 cut(s) | 65 |
| RsaI | GTAC | 2 cut(s) | 162, 250 |
| RsaNI | GTAC | 2 cut(s) | 161, 249 |
| SaqAI | TTAA | 1 cut(s) | 125 |
| SatI | GCNGC | 1 cut(s) | 61 |
| SduI | GDGCHC | 1 cut(s) | 87 |
| SetI | ASST | 4 cut(s) | 84, 149, 166, 351 |
| SfcI | CTRYAG | 1 cut(s) | 61 |
| Sse9I | AATT | 2 cut(s) | 126, 272 |
| SsiI | CCGC | 1 cut(s) | 328 |
| SspMI | CTAG | 1 cut(s) | 266 |
| StyI | CCWWGG | 1 cut(s) | 240 |
| TaaI | ACNGT | 1 cut(s) | 248 |
| TaiI | ACGT | 2 cut(s) | 166, 351 |
| TaqI | TCGA | 2 cut(s) | 135, 189 |
| TasI | AATT | 2 cut(s) | 126, 272 |
| TatI | WGTACW | 1 cut(s) | 248 |
| TfiI | GAWTC | 1 cut(s) | 11 |
| Tru1I | TTAA | 1 cut(s) | 125 |
| Tru9I | TTAA | 1 cut(s) | 125 |
| TseI | GCWGC | 1 cut(s) | 60 |
| TspDTI | ATGAA | 2 cut(s) | 17, 92 |
| VspI | ATTAAT | 1 cut(s) | 125 |
| XspI | CTAG | 1 cut(s) | 266 |