Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0006285

Physical Location & Seq

Genomic Coordinates Forward (+)

63657071 .. 63662314

Gene Structure 5244 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000010157

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2430 bp

ATGCTCACAAGGCTTAAGCTCCATTCAACTTCAAAAACCCACATCAATGCCCTGCGTTACTTCTTAAACCCTCTATTCACCACAACCGAGGTCGCCGAGTCACCCGAGCTTCCAAGCTGGGTCAAGTTCTTCGACACCAACCACCCAAAACACGCAGCTTCCGACGACGACGACGACTTCGTCATCCCTTCACTGGCCAATTGGGTCGAAACCCACAACCTAAACCACCCCACCAAACCTCCCAAGCCCTCAACTTACTATACCGACGACCTCGAAAGCATCAGTAGAATCTTGAAAACCCGGTACCCATCGCCGGAAAATGCAGCTGAAGCTTTGGAAAGGTACGATTTTGAGCTGTCAAACGGTTTGGTGCAACGGGTTTTGATGAGGTTTAGCAATGATTGGGTGCCGGCGTTGGGGTTTTTCATTTGGGCAAAACGTCGAACAGGTTATAGGCATCTTCCGGAGGCCTATAACTCCATGGTTGATATCTTGGGAAAGTCCAAGAATTTTGAACTTATGTGGGATTTTGTTGAGGAAATGGATCAAATTGGAGATGGGTATGTGACATTGGAGACAATGACTAAAGTGTTTAGGAGGCTTACAAAGGCTGGTAAGCACCAAGAGGCAATCGAGGCGTTTCGGGGCATGGAGCGATTCGGATTGAGCAAAGATGTTGTGGCATTGAACACTCTACTGAATGCATTGGTGAAGGAGAGAAGCGTTCAGCTTGCCCAAGAAGCTTTCTTGGAGTTTAAGGAATCTATACCTGTGAATGCTCACAGCTTTAATGTTTTGATACATAGGTGGTGTAAGAATAGGAAGTTAGATATTGCTAGGAACACAATGGAGGAGATGGAGAGACACGGGTTTTGCCCGGATGTTTTCTCTTATACTTGTTTGGTTGAGGCCTATTGTAGTGACAAGGATTTTCGCAAAGTTGATGAAGTTCTTAGTGAAATGAAGGGCAAGGCTTGCGAGCCGAATGCTGTGACATACACTATCGTAATGCATGCTTTGGGGAAGGCGAGGGAGATAACCAAGGCTTTGGAGGTTTATGAGTTGATGAAAGGGAATGGTGTTGTTCCTGATGTTTCGTTTTACAGCTCTTTGATTTACATTCTTGGTAAAGCCGGCAGGCTTAAGGATGTTCAAGAAGTGGTTGAGGATATGACAAAGCAGGGTGTAAAACCGGACGCTATGACCTATAACACCCTGATTTCTTGTGCTTGCAAGCATTTGCAGGAAGAGGCTGCTCTCAAGTTGATGAAGAAAATGGAGGAGGATTCGTGCAAGCCGGATGTTCAGACATACGCCCCGTTGTTGAAGATGTGCTGCATAAAGAAGAGGATGAAGAATGATAAACTCGAAAACGCTTGCTCCTTCTTTGAGGAGATGGTATTGAAGGGTTTTGTTCCCAAGGACAGCACATATTACTTGATAGTGGTAACAAGCGAACCAATAGTGATATACACCAACAGTGGTGAGACCATTTGTTGGTCAGAGCAAGCAATGGGTGGGGTTCAGCTCCATGGGTCGCTTGTGAAGATGGGTTTGGAGGAAAGCGTGTTTATTGGGAATTGGATGATCCCCGGAATGTGTTTGATGAAATGCTTGAGAGAAATACTGTGTCATGGACTAGTTCGATTTGTGCTTATGGTGACCATCGTGTGTGTCATTTCTGCTTGTGCAAAGTTGAAGGATGTTGCGCTGAGTGACAGTGTGTGTGCTTACATTGGGAAGTCTGGACTGAAGAGTAATATGCTTATGGGACTGGCTGGTGTAGCAGTTTCGGTGATTGGTGAAATGCTACAACAGGGCCTAAGACCCGACAAGGTTGCCATGTTATCTGCAATTTCAGGTTGTGCACAACTGAGTGATTCTCTCTCTGGAAAGTGCCGCCATGGTTATGTTCTAAGGAATGGACTAGAAGGTTGGGATACCATTTGTAGTGCCATGAGTGGTGATGTGAAGTCAGCTTGGGAAATGTTCAATGAGATGCCAAATAGTGATCTTGTCTCTTGGAACACTATGATTAGTCCTCTGTTCCGAGAGAGCAAGTTTGGGAAAGCAATTGAACTTTTCCGGGTGAAGGGAATAAAAGGAGATAGGGTGACCATGGTGGAGGCTGCATCTGCCTGCGGATATCTAGGAGCTTTTGATCTTGCAAAATGTGGTGACCCTCATAGTGTATTGAAGGTGTTCAATAACATGGCAAGAAGAGATGTTTCTGCTTCGACTGCAGCCATTTTAGCAATGGCCATTATGGGAAATGGGGAACGAGCTGTAGAGCTTTTCGATGACATGCTTAAGCAAAGGGTGAAACCAGATGAAGTAGTCTTTATGGCAGTACTAACAGGGTGCAGCCATGTTGGGCTTTTGGAACAAGGGCGGAACATTTTCAAGTCAATGCAGTCGGTCCATGGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

810

Amino Acids

90.67

Weight (kDa)

6.58

Isoelectric Point (pI)

33.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_long	PF17177	253 - 380	1e-10	Pentacotripeptide-repeat region of PRORP
PPR_2	PF13041	259 - 306	1.6e-11	PPR repeat family
PPR_3	PF13812	283 - 342	4.8e-12	Pentatricopeptide repeat domain
PPR_2	PF13041	293 - 342	2e-14	PPR repeat family
TPR_24	PF23276	317 - 424	5.2e-07	Fungal tetratrico peptide repeats
PPR_2	PF13041	331 - 372	9.9e-08	PPR repeat family
PPR_long	PF17177	346 - 450	4.8e-12	Pentacotripeptide-repeat region of PRORP
PPR_2	PF13041	363 - 412	5e-11	PPR repeat family
PPR_3	PF13812	387 - 445	1.5e-12	Pentatricopeptide repeat domain
PPR_1	PF12854	395 - 427	7.9e-07	PPR repeat
PPR_2	PF13041	401 - 446	6.4e-12	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0006285)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22670
fragaria_vesca	FvH4_4g00721
malus_domestica	MD13G1197300.v1.1
prunus_persica	Prupe.1G018400_v2.0.a1
pyrus_communis	pycom13g17020
rosa_chinensis	RchiOBHm_Chr1g0322101 RchiOBHm_Chr4g0386451
rosa_laevigata	RLG00000010131 RLG00000010157 RLG00000010161
rosa_multiflora	Rmu_co8274927.1_g000001 Rmu_sc0001942.1_g000008 Rmu_sc0001942.1_g000027 Rmu_sc0001942.1_g000051 Rmu_sc0002785.1_g000008 Rmu_sc0003786.1_g000023 Rmu_sc0006648.1_g000016 Rmu_sc0036937.1_g000001 Rmu_ssc0000272.1_g000008 Rmu_ssc0000272.1_g000009
rosa_roxburghii	Rroxscaffold_5G00333960 Rroxscaffold_6G00392780
rosa_samantha	Rh1AG049600 Rh4BG009300 Rh4CG014300 Rh4DG010100
rosa_wichuraiana	Rw4G000030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	179
Acc65I	GGTACC	1 cut(s)	303
AccB1I	GGYRCC	2 cut(s)	303, 406
AccB7I	CCANNNNNTGG	1 cut(s)	1497
AccIII	TCCGGA	1 cut(s)	463
AciI	CCGC	3 cut(s)	1900, 2142, 2392
AclWI	GGATC	2 cut(s)	552, 1582
AcoI	YGGCCR	2 cut(s)	195, 2259
AcsI	RAATTY	1 cut(s)	508
AcuI	CTGAAG	2 cut(s)	348, 1772
AfaI	GTAC	3 cut(s)	305, 344, 2352
AfiI	CCNNNNNNNGG	5 cut(s)	193, 313, 416, 1497, 2092
AflII	CTTAAG	3 cut(s)	14, 1142, 2309
AhlI	ACTAGT	1 cut(s)	1639
AjuI	GAANNNNNNNTTGG	2 cut(s)	1538, 1570
Alw21I	GWGCWC	1 cut(s)	1870
Alw26I	GTCTC	4 cut(s)	569, 856, 1481, 2023
Alw44I	GTGCAC	1 cut(s)	1866
AlwI	GGATC	2 cut(s)	552, 1582
Ama87I	CYCGRG	1 cut(s)	104
Aor13HI	TCCGGA	1 cut(s)	463
AoxI	GGCC	5 cut(s)	195, 468, 909, 1819, 2259
ApaLI	GTGCAC	1 cut(s)	1866
ApeKI	GCWGC	7 cut(s)	155, 323, 1253, 1335, 2129, 2243, 2364
ApoI	RAATTY	1 cut(s)	508
ArsI	GACNNNNNNTTYG	4 cut(s)	161, 193, 855, 887
Asp700I	GAANNNNTTC	2 cut(s)	2201, 2399
Asp718I	GGTACC	1 cut(s)	303
AspLEI	GCGC	1 cut(s)	1711
AspS9I	GGNCC	2 cut(s)	1819, 2419
AsuC2I	CCSGG	4 cut(s)	301, 878, 1593, 2087
AvaI	CYCGRG	1 cut(s)	104
AvaII	GGWCC	1 cut(s)	2419
BaeGI	GKGCMC	1 cut(s)	1870
BaeI	ACNNNNGTAYC	2 cut(s)	791, 824
BalI	TGGCCA	2 cut(s)	197, 2261
BanI	GGYRCC	2 cut(s)	303, 406
Bbv12I	GWGCWC	1 cut(s)	1870
BbvI	GCAGC	7 cut(s)	167, 335, 1240, 1322, 2116, 2255, 2376
BccI	CCATC	6 cut(s)	316, 551, 850, 1390, 1543, 1673
BcgI	CGANNNNNNTGC	4 cut(s)	968, 1002, 1820, 1854
BciVI	GTATCC	1 cut(s)	1933
BcnI	CCSGG	4 cut(s)	301, 878, 1593, 2087
BcoDI	GTCTC	4 cut(s)	569, 856, 1481, 2023
BcuI	ACTAGT	1 cut(s)	1639
BfaI	CTAG	5 cut(s)	837, 1640, 1928, 2150, 2428
BfmI	CTRYAG	2 cut(s)	2241, 2286
BfrI	CTTAAG	3 cut(s)	14, 1142, 2309
BfuI	GTATCC	1 cut(s)	1933
BisI	GCNGC	8 cut(s)	156, 324, 1254, 1336, 1900, 2130, 2244, 2365
BlsI	GCNGC	8 cut(s)	157, 325, 1255, 1337, 1901, 2131, 2245, 2366
BmcAI	AGTACT	1 cut(s)	2352
Bme1390I	CCNGG	4 cut(s)	301, 878, 1593, 2087
Bme18I	GGWCC	1 cut(s)	2419
BmeT110I	CYCGRG	1 cut(s)	104
BmgT120I	GGNCC	2 cut(s)	1819, 2419
BmiI	GGNNCC	2 cut(s)	305, 408
BmrFI	CCNGG	4 cut(s)	301, 878, 1593, 2087
BmsI	GCATC	4 cut(s)	288, 466, 1989, 2141
BplI	GAGNNNNNCTC	2 cut(s)	1867, 1899
BpuEI	CTTGAG	2 cut(s)	1244, 1636
BpuMI	CCSGG	4 cut(s)	301, 878, 1593, 2087
BsaI	GGTCTC	1 cut(s)	1481
BsaJI	CCNNGG	9 cut(s)	87, 480, 1041, 1419, 1531, 1591, 1903, 2118, 2422
BsaWI	WCCGGW	2 cut(s)	463, 1192
BsaXI	ACNNNNNCTCC	8 cut(s)	223, 253, 1274, 1304, 1364, 1394, 2097, 2127
Bsc4I	CCNNNNNNNGG	5 cut(s)	193, 313, 416, 1497, 2092
Bse118I	RCCGGY	2 cut(s)	409, 1133
Bse1I	ACTGG	2 cut(s)	198, 1779
Bse3DI	GCAATG	3 cut(s)	403, 1518, 2262
BseAI	TCCGGA	1 cut(s)	463
BseDI	CCNNGG	9 cut(s)	87, 480, 1041, 1419, 1531, 1591, 1903, 2118, 2422
BseGI	GGATG	7 cut(s)	183, 886, 1153, 1306, 1356, 1590, 1708
BseLI	CCNNNNNNNGG	5 cut(s)	193, 313, 416, 1497, 2092
BseMI	GCAATG	3 cut(s)	403, 1518, 2262
BseMII	CTCAG	2 cut(s)	1703, 1865
BseNI	ACTGG	2 cut(s)	198, 1779
BseRI	GAGGAG	3 cut(s)	866, 1295, 1406
BseSI	GKGCMC	1 cut(s)	1870
BseXI	GCAGC	7 cut(s)	167, 335, 1240, 1322, 2116, 2255, 2376
BseYI	CCCAGC	1 cut(s)	117
BsgI	GTGCAG	1 cut(s)	2383
BshFI	GGCC	5 cut(s)	197, 470, 911, 1821, 2261
BshNI	GGYRCC	2 cut(s)	303, 406
BsiHKAI	GWGCWC	1 cut(s)	1870
BsiHKCI	CYCGRG	1 cut(s)	104
BslFI	GGGAC	1 cut(s)	1785
BslI	CCNNNNNNNGG	5 cut(s)	193, 313, 416, 1497, 2092
BsmAI	GTCTC	4 cut(s)	569, 856, 1481, 2023
BsmFI	GGGAC	1 cut(s)	1785
BsmI	GAATGC	3 cut(s)	706, 781, 991
BsnI	GGCC	5 cut(s)	197, 470, 911, 1821, 2261
Bso31I	GGTCTC	1 cut(s)	1481
BsoBI	CYCGRG	1 cut(s)	104
Bsp1286I	GDGCHC	1 cut(s)	1870
Bsp13I	TCCGGA	1 cut(s)	463
Bsp143I	GATC	4 cut(s)	544, 1587, 2011, 2161
Bsp19I	CCATGG	5 cut(s)	480, 1531, 1903, 2118, 2422
BspACI	CCGC	3 cut(s)	1900, 2142, 2392
BspANI	GGCC	5 cut(s)	197, 470, 911, 1821, 2261
BspCNI	CTCAG	2 cut(s)	1704, 1866
BspEI	TCCGGA	1 cut(s)	463
BspLI	GGNNCC	2 cut(s)	305, 408
BspMAI	CTGCAG	1 cut(s)	2245
BspPI	GGATC	2 cut(s)	552, 1582
BspT107I	GGYRCC	2 cut(s)	303, 406
BspTI	CTTAAG	3 cut(s)	14, 1142, 2309
BspTNI	GGTCTC	1 cut(s)	1481
BsrDI	GCAATG	3 cut(s)	403, 1518, 2262
BsrFI	RCCGGY	2 cut(s)	409, 1133
BsrI	ACTGG	2 cut(s)	198, 1779
BssAI	RCCGGY	2 cut(s)	409, 1133
BssECI	CCNNGG	9 cut(s)	87, 480, 1041, 1419, 1531, 1591, 1903, 2118, 2422
BssMI	GATC	4 cut(s)	544, 1587, 2011, 2161
BssT1I	CCWWGG	7 cut(s)	480, 1041, 1419, 1531, 1903, 2118, 2422
Bst4CI	ACNGT	4 cut(s)	365, 1481, 1629, 1721
Bst6I	CTCTTC	4 cut(s)	1242, 1340, 1748, 2215
BstAFI	CTTAAG	3 cut(s)	14, 1142, 2309
BstAPI	GCANNNNNTGC	1 cut(s)	975
BstDEI	CTNAG	5 cut(s)	953, 1712, 1823, 1874, 1916
BstDSI	CCRYGG	5 cut(s)	480, 1531, 1903, 2118, 2422
BstEII	GGTNACC	3 cut(s)	1660, 2113, 2177
BstF5I	GGATG	7 cut(s)	183, 886, 1153, 1306, 1356, 1590, 1708
BstHHI	GCGC	1 cut(s)	1711
BstKTI	GATC	4 cut(s)	547, 1590, 2014, 2164
BstMAI	GTCTC	4 cut(s)	569, 856, 1481, 2023
BstMBI	GATC	4 cut(s)	544, 1587, 2011, 2161
BstMWI	GCNNNNNNNGC	9 cut(s)	10, 329, 635, 740, 975, 1784, 2135, 2240, 2252
BstNSI	RCATGY	2 cut(s)	1016, 2308
BstPI	GGTNACC	3 cut(s)	1660, 2113, 2177
BstSCI	CCNGG	4 cut(s)	299, 876, 1591, 2085
BstSFI	CTRYAG	2 cut(s)	2241, 2286
BstSLI	GKGCMC	1 cut(s)	1870
BstV1I	GCAGC	7 cut(s)	167, 335, 1240, 1322, 2116, 2255, 2376
BstXI	CCANNNNNNTGG	1 cut(s)	1048
BsuI	GTATCC	1 cut(s)	1933
BsuRI	GGCC	5 cut(s)	197, 470, 911, 1821, 2261
BtgI	CCRYGG	5 cut(s)	480, 1531, 1903, 2118, 2422
BtgZI	GCGATG	1 cut(s)	294
BtsCI	GGATG	7 cut(s)	183, 886, 1153, 1306, 1356, 1590, 1708
BtsIMutI	CAGTG	3 cut(s)	191, 1486, 1726
CfoI	GCGC	1 cut(s)	1711
Cfr10I	RCCGGY	2 cut(s)	409, 1133
Cfr13I	GGNCC	2 cut(s)	1819, 2419
CseI	GACGC	1 cut(s)	1205
Csp6I	GTAC	3 cut(s)	304, 343, 2351
CviQI	GTAC	3 cut(s)	304, 343, 2351
DdeI	CTNAG	5 cut(s)	953, 1712, 1823, 1874, 1916
DpnI	GATC	4 cut(s)	546, 1589, 2013, 2163
DpnII	GATC	4 cut(s)	544, 1587, 2011, 2161
DrdI	GACNNNNNNGTC	1 cut(s)	179
DseDI	GACNNNNNNGTC	1 cut(s)	179
EaeI	YGGCCR	2 cut(s)	195, 2259
Eam1104I	CTCTTC	4 cut(s)	1242, 1340, 1748, 2215
EarI	CTCTTC	4 cut(s)	1242, 1340, 1748, 2215
EciI	GGCGGA	1 cut(s)	2407
Eco130I	CCWWGG	7 cut(s)	480, 1041, 1419, 1531, 1903, 2118, 2422
Eco147I	AGGCCT	2 cut(s)	470, 911
Eco31I	GGTCTC	1 cut(s)	1481
Eco32I	GATATC	2 cut(s)	490, 2147
Eco47I	GGWCC	1 cut(s)	2419
Eco57I	CTGAAG	2 cut(s)	348, 1772
Eco88I	CYCGRG	1 cut(s)	104
Eco91I	GGTNACC	3 cut(s)	1660, 2113, 2177
EcoO109I	RGGNCCY	1 cut(s)	1819
EcoO65I	GGTNACC	3 cut(s)	1660, 2113, 2177
EcoRV	GATATC	2 cut(s)	490, 2147
EcoT14I	CCWWGG	7 cut(s)	480, 1041, 1419, 1531, 1903, 2118, 2422
EcoT22I	ATGCAT	2 cut(s)	706, 1014
ErhI	CCWWGG	7 cut(s)	480, 1041, 1419, 1531, 1903, 2118, 2422
FaqI	GGGAC	1 cut(s)	1785
Fnu4HI	GCNGC	8 cut(s)	156, 324, 1254, 1336, 1900, 2130, 2244, 2365
FokI	GGATG	7 cut(s)	170, 893, 1160, 1313, 1363, 1597, 1715
Fsp4HI	GCNGC	8 cut(s)	156, 324, 1254, 1336, 1900, 2130, 2244, 2365
FspBI	CTAG	5 cut(s)	837, 1640, 1928, 2150, 2428
GlaI	GCGC	1 cut(s)	1710
GluI	GCNGC	8 cut(s)	156, 324, 1254, 1336, 1900, 2130, 2244, 2365
GsaI	CCCAGC	1 cut(s)	121
HaeIII	GGCC	5 cut(s)	197, 470, 911, 1821, 2261
HgaI	GACGC	1 cut(s)	1205
HhaI	GCGC	1 cut(s)	1711
Hin6I	GCGC	1 cut(s)	1709
HinP1I	GCGC	1 cut(s)	1709
HindIII	AAGCTT	2 cut(s)	330, 741
HinfI	GANTC	6 cut(s)	98, 288, 657, 761, 1286, 1880
Hpy166II	GTNNAC	1 cut(s)	1868
Hpy188I	TCNGA	5 cut(s)	163, 662, 1308, 1504, 2051
Hpy188III	TCNNGA	6 cut(s)	292, 464, 1088, 1154, 1746, 1890
Hpy8I	GTNNAC	1 cut(s)	1868
Hpy99I	CGWCG	6 cut(s)	167, 170, 173, 176, 269, 444
HpyCH4III	ACNGT	4 cut(s)	365, 1481, 1629, 1721
HpyCH4IV	ACGT	1 cut(s)	439
HpyF10VI	GCNNNNNNNGC	9 cut(s)	10, 329, 635, 740, 975, 1784, 2135, 2240, 2252
HpyF3I	CTNAG	5 cut(s)	953, 1712, 1823, 1874, 1916
HpySE526I	ACGT	1 cut(s)	439
HspAI	GCGC	1 cut(s)	1709
Kpn2I	TCCGGA	1 cut(s)	463
KpnI	GGTACC	1 cut(s)	307
KroI	GCCGGC	2 cut(s)	409, 1133
KroNI	GCCGGC	2 cut(s)	411, 1135
Kzo9I	GATC	4 cut(s)	544, 1587, 2011, 2161
LmnI	GCTCC	5 cut(s)	24, 652, 1385, 1533, 2153
Lsp1109I	GCAGC	7 cut(s)	167, 335, 1240, 1322, 2116, 2255, 2376
LweI	GCATC	4 cut(s)	288, 466, 1989, 2141
MaeI	CTAG	5 cut(s)	837, 1640, 1928, 2150, 2428
MaeII	ACGT	1 cut(s)	439
MalI	GATC	4 cut(s)	546, 1589, 2013, 2163
MboI	GATC	4 cut(s)	544, 1587, 2011, 2161
MfeI	CAATTG	2 cut(s)	199, 2073
MhlI	GDGCHC	1 cut(s)	1870
MlsI	TGGCCA	2 cut(s)	197, 2261
MluCI	AATT	6 cut(s)	199, 508, 549, 1579, 1854, 2073
MluNI	TGGCCA	2 cut(s)	197, 2261
MlyI	GAGTC	1 cut(s)	107
MmeI	TCCRAC	1 cut(s)	186
Mox20I	TGGCCA	2 cut(s)	197, 2261
Mph1103I	ATGCAT	2 cut(s)	706, 1014
MroI	TCCGGA	1 cut(s)	463
MroNI	GCCGGC	2 cut(s)	409, 1133
MroXI	GAANNNNTTC	2 cut(s)	2201, 2399
MscI	TGGCCA	2 cut(s)	197, 2261
MseI	TTAA	6 cut(s)	15, 65, 756, 789, 1143, 2310
MslI	CAYNNNNRTG	2 cut(s)	45, 1908
Msp20I	TGGCCA	2 cut(s)	197, 2261
MspA1I	CMGCKG	1 cut(s)	326
MspCI	CTTAAG	3 cut(s)	14, 1142, 2309
MspR9I	CCNGG	4 cut(s)	301, 878, 1593, 2087
MunI	CAATTG	2 cut(s)	199, 2073
Mva1269I	GAATGC	3 cut(s)	706, 781, 991
MwoI	GCNNNNNNNGC	9 cut(s)	10, 329, 635, 740, 975, 1784, 2135, 2240, 2252
NaeI	GCCGGC	2 cut(s)	411, 1135
NciI	CCSGG	4 cut(s)	301, 878, 1593, 2087
NcoI	CCATGG	5 cut(s)	480, 1531, 1903, 2118, 2422
NdeII	GATC	4 cut(s)	544, 1587, 2011, 2161
NgoMIV	GCCGGC	2 cut(s)	409, 1133
NlaIV	GGNNCC	2 cut(s)	305, 408
NmeAIII	GCCGAG	1 cut(s)	121
NmuCI	GTSAC	8 cut(s)	99, 565, 920, 991, 1660, 1715, 2113, 2177
NsiI	ATGCAT	2 cut(s)	706, 1014
NspI	RCATGY	2 cut(s)	1016, 2308
PaeI	GCATGC	1 cut(s)	1016
PceI	AGGCCT	2 cut(s)	470, 911
PcsI	WCGNNNNNNNCGW	3 cut(s)	159, 171, 177
PctI	GAATGC	3 cut(s)	706, 781, 991
PdiI	GCCGGC	2 cut(s)	411, 1135
PdmI	GAANNNNTTC	2 cut(s)	2201, 2399
PfeI	GAWTC	5 cut(s)	288, 657, 761, 1286, 1880
PflFI	GACNNNGTC	1 cut(s)	179
PflMI	CCANNNNNTGG	1 cut(s)	1497
PkrI	GCNGC	8 cut(s)	157, 325, 1255, 1337, 1901, 2131, 2245, 2366
PleI	GAGTC	1 cut(s)	106
PpsI	GAGTC	1 cut(s)	106
PspEI	GGTNACC	3 cut(s)	1660, 2113, 2177
PspFI	CCCAGC	1 cut(s)	117
PspN4I	GGNNCC	2 cut(s)	305, 408
PspPI	GGNCC	2 cut(s)	1819, 2419
PstI	CTGCAG	1 cut(s)	2245
PsyI	GACNNNGTC	1 cut(s)	179
PvuII	CAGCTG	1 cut(s)	326
RsaI	GTAC	3 cut(s)	305, 344, 2352
RsaNI	GTAC	3 cut(s)	304, 343, 2351
RseI	CAYNNNNRTG	2 cut(s)	45, 1908
SaqAI	TTAA	6 cut(s)	15, 65, 756, 789, 1143, 2310
SatI	GCNGC	8 cut(s)	156, 324, 1254, 1336, 1900, 2130, 2244, 2365
Sau3AI	GATC	4 cut(s)	544, 1587, 2011, 2161
Sau96I	GGNCC	2 cut(s)	1819, 2419
ScaI	AGTACT	1 cut(s)	2352
SchI	GAGTC	1 cut(s)	107
ScrFI	CCNGG	4 cut(s)	301, 878, 1593, 2087
SduI	GDGCHC	1 cut(s)	1870
SfaNI	GCATC	4 cut(s)	288, 466, 1989, 2141
SfcI	CTRYAG	2 cut(s)	2241, 2286
SinI	GGWCC	1 cut(s)	2419
SmiMI	CAYNNNNRTG	2 cut(s)	45, 1908
SmlI	CTYRAG	5 cut(s)	14, 1142, 1259, 1615, 2309
SmoI	CTYRAG	5 cut(s)	14, 1142, 1259, 1615, 2309
SpeI	ACTAGT	1 cut(s)	1639
SphI	GCATGC	1 cut(s)	1016
Sse9I	AATT	6 cut(s)	199, 508, 549, 1579, 1854, 2073
SseBI	AGGCCT	2 cut(s)	470, 911
SsiI	CCGC	3 cut(s)	1900, 2142, 2392
SspMI	CTAG	5 cut(s)	837, 1640, 1928, 2150, 2428
StuI	AGGCCT	2 cut(s)	470, 911
StyD4I	CCNGG	4 cut(s)	299, 876, 1591, 2085
StyI	CCWWGG	7 cut(s)	480, 1041, 1419, 1531, 1903, 2118, 2422
TaaI	ACNGT	4 cut(s)	365, 1481, 1629, 1721
TaiI	ACGT	1 cut(s)	442
TaqI	TCGA	9 cut(s)	132, 207, 273, 442, 633, 1368, 1645, 2237, 2298
TaqII	GACCGA	1 cut(s)	2407
TasI	AATT	6 cut(s)	199, 508, 549, 1579, 1854, 2073
TatI	WGTACW	1 cut(s)	2350
TauI	GCSGC	1 cut(s)	1902
TfiI	GAWTC	5 cut(s)	288, 657, 761, 1286, 1880
Tru1I	TTAA	6 cut(s)	15, 65, 756, 789, 1143, 2310
Tru9I	TTAA	6 cut(s)	15, 65, 756, 789, 1143, 2310
TscAI	CASTG	3 cut(s)	198, 1486, 1726
TseFI	GTSAC	8 cut(s)	99, 565, 920, 991, 1660, 1715, 2113, 2177
TseI	GCWGC	7 cut(s)	155, 323, 1253, 1335, 2129, 2243, 2364
Tsp45I	GTSAC	8 cut(s)	99, 565, 920, 991, 1660, 1715, 2113, 2177
TspDTI	ATGAA	8 cut(s)	415, 960, 977, 1082, 1283, 1367, 1622, 2346
TspRI	CASTG	3 cut(s)	198, 1486, 1726
Tth111I	GACNNNGTC	1 cut(s)	179
Van91I	CCANNNNNTGG	1 cut(s)	1497
Vha464I	CTTAAG	3 cut(s)	14, 1142, 2309
VneI	GTGCAC	1 cut(s)	1866
VpaK11BI	GGWCC	1 cut(s)	2419
XapI	RAATTY	1 cut(s)	508
XceI	RCATGY	2 cut(s)	1016, 2308
XcmI	CCANNNNNNNNNTGG	1 cut(s)	2254
XmnI	GAANNNNTTC	2 cut(s)	2201, 2399
XspI	CTAG	5 cut(s)	837, 1640, 1928, 2150, 2428
ZrmI	AGTACT	1 cut(s)	2352
Zsp2I	ATGCAT	2 cut(s)	706, 1014

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.