Prupe.1G018400_v2.0.a1

Pentatricopeptide repeat-containing protein

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
Physical Location & Seq
Reverse (-)
1292625 .. 1294277
1653 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G018400.1

Sequence Viewer

Length: 1653 bp
ATGCTTTCAAGGTTCCAAAATCCCAACCTCTCTTCCATTTCAAAAACCAACATCAAACTGCTGCGTCACTTGTTATGCAATCCTCTGTGCACCTTGACTGAGCCAACCCCAGTCAGTGAAGTCACCGAGTCTCCCGAGCTTCCAAACTGGGTCAAATTCTTCGACACTAAACGCCCAGAAAAGGCAGTTCTTGATGAGGATTTTGTTATCCCTTCTCTTGCCAATTGGGTCGAGGCTCAGAAGCTCAGAGACCCCAGCAAAGCTGTCAAGCGCCCGCTCAGCGAGACCGCTGATACCGACGACATCGATAAAGTCTGTAGAATCTTGAAAAATGGGTACCCATCACTGGAAAATGCTGCTCAAGCTCTGGATGGGTGTGTTTCGGATTTATCAAACAGTTTGGTGGAACGGGTTTTGAAGAGGTTTAGCAATGAATGGGTTCCTGCTTTCGGATTCTTCATTTGGGCAAAAGCACAAACAGGTTATAGGCATCCGCCGGAGGCATATAACTCAATGGTTGACATTTTAGGCAAGTCCGAGAATTTTGAGCTCATGTGGGAGATGGTTGAAGAAATGGTCAAAATTGGAGGAGGGTATGTTACTTTGGACACAATGAGTAAGGTGATGAGGAGGCTTGCAAGGGCTGGTCGGTACAAGGAGGCAATAGATGCATTTCGGGGGATCGAGCGATTTGGCGTGAGGAGAGACGTGCTGTCCTTGAACACTCTCATGGGTGCATTGGTGAAGGAAAGAAGTGTTGAGCATGCCCATGAAGTTTTCTTGGAGTTTAAGGAATCTATACCTTTGAATCCTCAAACTTTCAATGTTCTGATACATGGGTGGTGTAAACCCAGGAAGCTAGACATTGCTAGAAACACAATGGAGGAGATGGAGAAGCACGGTTTTCATCCCGATGTTCTCTCTTATACCTGTTTCATTGAAGCATATTGTCATGACAAGGATTTTCGCAAAGTTGATGAAGTTCTTGGTGAAATGAAGGACAAGGCTTGTGAGCCAAATACCGTGACATACACTATAATAATGCATGCTTTAGGGAAGGCGAGGGAGATAACTAAAGCTTTGGAGGTTTATGAGAAGATGAAAAGGAGTGGTTGTGTTCCTGATACTTCGTTTTATAACTCTTTGATTTTCCTTCTTGGTAAAGCTGGTAGGCTCAAGGATGTTCAGGAAGTAGTTGAGGACATGACAAATCAAGGTGTAAAGCCGGACACTTTGACGCATAATACCCTGATTTCTTCTGCTTGTGCACATTCGCAGGAAGAGGCTGCTCTCAAGTTGCTCAAGAATATGGAGGAGGAATCATGCAAGCCGGATCTTAAGACTTATGCCCCATTGTTGAAGTTGTTTTGCAGAAAGAAGAGGATGAGGGTGCTCTGCTTTTTGTTAGACCACATGTTTAAGAACGACGTGAGCATTGAAGGTGGAACTTATGCACTCTTGGTACGTGGGCTTTGTAGCAATGGTAAGCTTGAAAATGCTTGCTCATTCTTTGAGGAAATGGTGTCGAAGGGATTCGTTCCGAAGGATAGCACATACAACATGTTGATAAAGGAATTGGAGGGGAAGAGTATGGAGAAAGAGAAGAAACATGTTGAAAAGTTAATGTTGGAGGCAAAAGAGCAAGAGATATAG

Protein Analysis

551

Amino Acids

62.76

Weight (kDa)

6.54

Isoelectric Point (pI)

33.66

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1137
Acc65I GGTACC 1 cut(s) 336
AccB1I GGYRCC 1 cut(s) 336
AccBSI CCGCTC 1 cut(s) 277
AciI CCGC 3 cut(s) 275, 288, 494
AclWI GGATC 2 cut(s) 689, 1341
AcsI RAATTY 2 cut(s) 155, 541
AfaI GTAC 3 cut(s) 338, 653, 1464
AfiI CCNNNNNNNGG 3 cut(s) 181, 346, 449
AflII CTTAAG 1 cut(s) 1337
AflIII ACRYGT 3 cut(s) 1413, 1560, 1609
AhdI GACNNNNNGTC 1 cut(s) 712
AjiI CACGTC 2 cut(s) 709, 1429
AjnI CCWGG 1 cut(s) 851
AluBI AGCT 9 cut(s) 139, 244, 263, 365, 550, 859, 1079, 1166, 1489
AluI AGCT 9 cut(s) 139, 244, 263, 365, 550, 859, 1079, 1166, 1489
Alw21I GWGCWC 4 cut(s) 92, 552, 1270, 1395
Alw26I GTCTC 4 cut(s) 135, 243, 278, 699
Alw44I GTGCAC 2 cut(s) 88, 1266
AlwI GGATC 2 cut(s) 689, 1341
Ama87I CYCGRG 1 cut(s) 134
ApaLI GTGCAC 2 cut(s) 88, 1266
ApeKI GCWGC 3 cut(s) 61, 356, 1286
ApoI RAATTY 2 cut(s) 155, 541
Asp700I GAANNNNTTC 2 cut(s) 438, 1532
Asp718I GGTACC 1 cut(s) 336
AspLEI GCGC 1 cut(s) 273
AsuHPI GGTGA 4 cut(s) 115, 634, 754, 1001
AvaI CYCGRG 1 cut(s) 134
BaeGI GKGCMC 2 cut(s) 92, 1270
BaeI ACNNNNGTAYC 2 cut(s) 824, 857
BanI GGYRCC 1 cut(s) 336
BanII GRGCYC 1 cut(s) 552
Bbv12I GWGCWC 4 cut(s) 92, 552, 1270, 1395
BbvI GCAGC 3 cut(s) 48, 343, 1273
BccI CCATC 4 cut(s) 349, 365, 556, 883
BciT130I CCWGG 1 cut(s) 853
BcoDI GTCTC 4 cut(s) 135, 243, 278, 699
BfaI CTAG 2 cut(s) 860, 870
BfmI CTRYAG 1 cut(s) 316
BfoI RGCGCY 1 cut(s) 274
BfrI CTTAAG 1 cut(s) 1337
BisI GCNGC 3 cut(s) 62, 357, 1287
BlpI GCTNAGC 1 cut(s) 278
BlsI GCNGC 3 cut(s) 63, 358, 1288
Bme1390I CCNGG 1 cut(s) 853
BmeRI GACNNNNNGTC 1 cut(s) 712
BmeT110I CYCGRG 1 cut(s) 134
BmgBI CACGTC 2 cut(s) 709, 1429
BmiI GGNNCC 3 cut(s) 14, 338, 441
BmrFI CCNGG 1 cut(s) 853
BmrI ACTGGG 2 cut(s) 104, 157
BmsI GCATC 2 cut(s) 499, 658
BmuI ACTGGG 2 cut(s) 104, 157
Bpu1102I GCTNAGC 1 cut(s) 278
BpuEI CTTGAG 4 cut(s) 345, 1160, 1277, 1286
Bsa29I ATCGAT 1 cut(s) 306
BsaAI YACGTR 1 cut(s) 1466
BsaI GGTCTC 2 cut(s) 243, 278
BsaJI CCNNGG 1 cut(s) 851
BsaXI ACNNNNNCTCC 6 cut(s) 115, 145, 582, 612, 1099, 1129
Bsc4I CCNNNNNNNGG 3 cut(s) 181, 346, 449
Bse1I ACTGG 3 cut(s) 110, 152, 351
Bse3DI GCAATG 3 cut(s) 436, 864, 1486
BseBI CCWGG 1 cut(s) 853
BseCI ATCGAT 1 cut(s) 306
BseDI CCNNGG 1 cut(s) 851
BseGI GGATG 5 cut(s) 376, 490, 907, 1186, 1389
BseLI CCNNNNNNNGG 3 cut(s) 181, 346, 449
BseMI GCAATG 3 cut(s) 436, 864, 1486
BseMII CTCAG 4 cut(s) 90, 251, 259, 292
BseNI ACTGG 3 cut(s) 110, 152, 351
BseRI GAGGAG 5 cut(s) 603, 643, 715, 899, 1328
BseSI GKGCMC 2 cut(s) 92, 1270
BseXI GCAGC 3 cut(s) 48, 343, 1273
BseYI CCCAGC 1 cut(s) 254
BshNI GGYRCC 1 cut(s) 336
BshVI ATCGAT 1 cut(s) 306
BsiHKAI GWGCWC 4 cut(s) 92, 552, 1270, 1395
BsiHKCI CYCGRG 1 cut(s) 134
BsiSI CCGG 3 cut(s) 497, 1226, 1331
BslI CCNNNNNNNGG 3 cut(s) 181, 346, 449
BsmAI GTCTC 4 cut(s) 135, 243, 278, 699
BsmBI CGTCTC 1 cut(s) 699
Bso31I GGTCTC 2 cut(s) 243, 278
BsoBI CYCGRG 1 cut(s) 134
Bsp1286I GDGCHC 4 cut(s) 92, 552, 1270, 1395
Bsp143I GATC 2 cut(s) 681, 1333
Bsp1720I GCTNAGC 1 cut(s) 278
BspACI CCGC 3 cut(s) 275, 288, 494
BspCNI CTCAG 4 cut(s) 91, 250, 258, 291
BspDI ATCGAT 1 cut(s) 306
BspHI TCATGA 1 cut(s) 952
BspLI GGNNCC 3 cut(s) 14, 338, 441
BspPI GGATC 2 cut(s) 689, 1341
BspT107I GGYRCC 1 cut(s) 336
BspTI CTTAAG 1 cut(s) 1337
BspTNI GGTCTC 2 cut(s) 243, 278
BsrBI CCGCTC 1 cut(s) 277
BsrDI GCAATG 3 cut(s) 436, 864, 1486
BsrI ACTGG 3 cut(s) 110, 152, 351
BssECI CCNNGG 1 cut(s) 851
BssMI GATC 2 cut(s) 681, 1333
Bst2UI CCWGG 1 cut(s) 853
Bst4CI ACNGT 3 cut(s) 398, 902, 1024
Bst6I CTCTTC 5 cut(s) 37, 413, 1275, 1373, 1580
BstAFI CTTAAG 1 cut(s) 1337
BstAPI GCANNNNNTGC 1 cut(s) 668
BstBAI YACGTR 1 cut(s) 1466
BstC8I GCNNGC 6 cut(s) 275, 636, 765, 1047, 1328, 1501
BstDEI CTNAG 4 cut(s) 99, 237, 245, 278
BstF5I GGATG 5 cut(s) 376, 490, 907, 1186, 1389
BstH2I RGCGCY 1 cut(s) 274
BstHHI GCGC 1 cut(s) 273
BstKTI GATC 2 cut(s) 684, 1336
BstMAI GTCTC 4 cut(s) 135, 243, 278, 699
BstMBI GATC 2 cut(s) 681, 1333
BstMWI GCNNNNNNNGC 3 cut(s) 279, 362, 668
BstNI CCWGG 1 cut(s) 853
BstNSI RCATGY 5 cut(s) 767, 1049, 1417, 1564, 1613
BstSCI CCNGG 1 cut(s) 851
BstSFI CTRYAG 1 cut(s) 316
BstSLI GKGCMC 2 cut(s) 92, 1270
BstV1I GCAGC 3 cut(s) 48, 343, 1273
BstX2I RGATCY 1 cut(s) 1333
BstYI RGATCY 1 cut(s) 1333
Bsu15I ATCGAT 1 cut(s) 306
BsuTUI ATCGAT 1 cut(s) 306
BtrI CACGTC 2 cut(s) 709, 1429
BtsCI GGATG 5 cut(s) 376, 490, 907, 1186, 1389
BtsIMutI CAGTG 2 cut(s) 121, 344
Cac8I GCNNGC 6 cut(s) 275, 636, 765, 1047, 1328, 1501
CciI TCATGA 1 cut(s) 952
CfoI GCGC 1 cut(s) 273
ClaI ATCGAT 1 cut(s) 306
CseI GACGC 2 cut(s) 53, 1246
Csp6I GTAC 3 cut(s) 337, 652, 1463
CviQI GTAC 3 cut(s) 337, 652, 1463
DdeI CTNAG 4 cut(s) 99, 237, 245, 278
DpnI GATC 2 cut(s) 683, 1335
DpnII GATC 2 cut(s) 681, 1333
DriI GACNNNNNGTC 1 cut(s) 712
Eam1104I CTCTTC 5 cut(s) 37, 413, 1275, 1373, 1580
Eam1105I GACNNNNNGTC 1 cut(s) 712
EarI CTCTTC 5 cut(s) 37, 413, 1275, 1373, 1580
EciI GGCGGA 1 cut(s) 483
Ecl136II GAGCTC 1 cut(s) 550
Eco24I GRGCYC 1 cut(s) 552
Eco31I GGTCTC 2 cut(s) 243, 278
Eco53kI GAGCTC 1 cut(s) 550
Eco88I CYCGRG 1 cut(s) 134
EcoICRI GAGCTC 1 cut(s) 550
EcoRII CCWGG 1 cut(s) 851
EcoT22I ATGCAT 2 cut(s) 673, 1047
EcoT38I GRGCYC 1 cut(s) 552
Esp3I CGTCTC 1 cut(s) 699
FauI CCCGC 1 cut(s) 282
Fnu4HI GCNGC 3 cut(s) 62, 357, 1287
FokI GGATG 5 cut(s) 383, 477, 894, 1193, 1396
FriOI GRGCYC 1 cut(s) 552
Fsp4HI GCNGC 3 cut(s) 62, 357, 1287
FspBI CTAG 2 cut(s) 860, 870
GlaI GCGC 1 cut(s) 272
GluI GCNGC 3 cut(s) 62, 357, 1287
GsaI CCCAGC 1 cut(s) 258
HaeII RGCGCY 1 cut(s) 274
HapII CCGG 3 cut(s) 497, 1226, 1331
HgaI GACGC 2 cut(s) 53, 1246
HhaI GCGC 1 cut(s) 273
Hin6I GCGC 1 cut(s) 271
HinP1I GCGC 1 cut(s) 271
HincII GTYRAC 1 cut(s) 520
HindII GTYRAC 1 cut(s) 520
HindIII AAGCTT 2 cut(s) 1077, 1487
HinfI GANTC 7 cut(s) 128, 321, 453, 794, 808, 1319, 1533
HpaII CCGG 3 cut(s) 497, 1226, 1331
HphI GGTGA 4 cut(s) 115, 634, 754, 1001
Hpy166II GTNNAC 4 cut(s) 90, 520, 848, 1268
Hpy188I TCNGA 7 cut(s) 240, 248, 385, 452, 538, 831, 1542
Hpy188III TCNNGA 9 cut(s) 134, 191, 325, 368, 911, 953, 1121, 1187, 1303
Hpy8I GTNNAC 4 cut(s) 90, 520, 848, 1268
Hpy99I CGWCG 2 cut(s) 302, 1430
HpyAV CCTTC 8 cut(s) 222, 739, 991, 1051, 1163, 1433, 1522, 1537
HpyCH4III ACNGT 3 cut(s) 398, 902, 1024
HpyCH4IV ACGT 3 cut(s) 708, 1428, 1465
HpyF10VI GCNNNNNNNGC 3 cut(s) 279, 362, 668
HpyF3I CTNAG 4 cut(s) 99, 237, 245, 278
HpySE526I ACGT 3 cut(s) 708, 1428, 1465
HspAI GCGC 1 cut(s) 271
KpnI GGTACC 1 cut(s) 340
Kzo9I GATC 2 cut(s) 681, 1333
Lsp1109I GCAGC 3 cut(s) 48, 343, 1273
LweI GCATC 2 cut(s) 499, 658
MaeI CTAG 2 cut(s) 860, 870
MaeII ACGT 3 cut(s) 708, 1428, 1465
MaeIII GTNAC 4 cut(s) 65, 121, 598, 1024
MalI GATC 2 cut(s) 683, 1335
MbiI CCGCTC 1 cut(s) 277
MboI GATC 2 cut(s) 681, 1333
MfeI CAATTG 1 cut(s) 223
MflI RGATCY 1 cut(s) 1333
MhlI GDGCHC 4 cut(s) 92, 552, 1270, 1395
MluCI AATT 5 cut(s) 155, 223, 541, 582, 1574
MlyI GAGTC 1 cut(s) 137
MmeI TCCRAC 1 cut(s) 1608
Mph1103I ATGCAT 2 cut(s) 673, 1047
MroXI GAANNNNTTC 2 cut(s) 438, 1532
MseI TTAA 4 cut(s) 789, 1338, 1419, 1622
MslI CAYNNNNRTG 3 cut(s) 728, 768, 912
MspA1I CMGCKG 1 cut(s) 290
MspCI CTTAAG 1 cut(s) 1337
MspI CCGG 3 cut(s) 497, 1226, 1331
MspR9I CCNGG 1 cut(s) 853
MunI CAATTG 1 cut(s) 223
MvaI CCWGG 1 cut(s) 853
MwoI GCNNNNNNNGC 3 cut(s) 279, 362, 668
NdeII GATC 2 cut(s) 681, 1333
NlaIV GGNNCC 3 cut(s) 14, 338, 441
NmuCI GTSAC 3 cut(s) 65, 121, 1024
NsiI ATGCAT 2 cut(s) 673, 1047
NspI RCATGY 5 cut(s) 767, 1049, 1417, 1564, 1613
PaeI GCATGC 2 cut(s) 767, 1049
PagI TCATGA 1 cut(s) 952
PciI ACATGT 3 cut(s) 1413, 1560, 1609
PdmI GAANNNNTTC 2 cut(s) 438, 1532
PfeI GAWTC 6 cut(s) 321, 453, 794, 808, 1319, 1533
PkrI GCNGC 3 cut(s) 63, 358, 1288
PleI GAGTC 1 cut(s) 136
PpsI GAGTC 1 cut(s) 136
Ppu21I YACGTR 1 cut(s) 1466
PscI ACATGT 3 cut(s) 1413, 1560, 1609
PsiI TTATAA 1 cut(s) 1137
Psp124BI GAGCTC 1 cut(s) 552
Psp6I CCWGG 1 cut(s) 851
PspFI CCCAGC 1 cut(s) 254
PspGI CCWGG 1 cut(s) 851
PspN4I GGNNCC 3 cut(s) 14, 338, 441
PsuI RGATCY 1 cut(s) 1333
RsaI GTAC 3 cut(s) 338, 653, 1464
RsaNI GTAC 3 cut(s) 337, 652, 1463
RseI CAYNNNNRTG 3 cut(s) 728, 768, 912
SacI GAGCTC 1 cut(s) 552
SaqAI TTAA 4 cut(s) 789, 1338, 1419, 1622
SatI GCNGC 3 cut(s) 62, 357, 1287
Sau3AI GATC 2 cut(s) 681, 1333
SchI GAGTC 1 cut(s) 137
ScrFI CCNGG 1 cut(s) 853
SduI GDGCHC 4 cut(s) 92, 552, 1270, 1395
SfaNI GCATC 2 cut(s) 499, 658
SfcI CTRYAG 1 cut(s) 316
SmiMI CAYNNNNRTG 3 cut(s) 728, 768, 912
SmlI CTYRAG 5 cut(s) 360, 1175, 1292, 1301, 1337
SmoI CTYRAG 5 cut(s) 360, 1175, 1292, 1301, 1337
SphI GCATGC 2 cut(s) 767, 1049
Sse9I AATT 5 cut(s) 155, 223, 541, 582, 1574
SsiI CCGC 3 cut(s) 275, 288, 494
SspMI CTAG 2 cut(s) 860, 870
SstI GAGCTC 1 cut(s) 552
StyD4I CCNGG 1 cut(s) 851
TaaI ACNGT 3 cut(s) 398, 902, 1024
TaiI ACGT 3 cut(s) 711, 1431, 1468
TaqI TCGA 5 cut(s) 162, 231, 306, 684, 1526
TasI AATT 5 cut(s) 155, 223, 541, 582, 1574
TfiI GAWTC 6 cut(s) 321, 453, 794, 808, 1319, 1533
Tru1I TTAA 4 cut(s) 789, 1338, 1419, 1622
Tru9I TTAA 4 cut(s) 789, 1338, 1419, 1622
TscAI CASTG 2 cut(s) 121, 351
TseFI GTSAC 3 cut(s) 65, 121, 1024
TseI GCWGC 3 cut(s) 61, 356, 1286
Tsp45I GTSAC 3 cut(s) 65, 121, 1024
TspDTI ATGAA 8 cut(s) 447, 448, 786, 896, 925, 993, 1010, 1115
TspRI CASTG 2 cut(s) 121, 351
Vha464I CTTAAG 1 cut(s) 1337
VneI GTGCAC 2 cut(s) 88, 1266
XapI RAATTY 2 cut(s) 155, 541
XceI RCATGY 5 cut(s) 767, 1049, 1417, 1564, 1613
XmnI GAANNNNTTC 2 cut(s) 438, 1532
XspI CTAG 2 cut(s) 860, 870
Zsp2I ATGCAT 2 cut(s) 673, 1047
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.