Pentatricopeptide repeat-containing protein
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G22670 |
| fragaria_vesca | FvH4_4g00721 |
| malus_domestica | MD13G1197300.v1.1 |
| prunus_persica | Prupe.1G018400_v2.0.a1 |
| pyrus_communis | pycom13g17020 |
| rosa_chinensis | RchiOBHm_Chr1g0322101 RchiOBHm_Chr4g0386451 |
| rosa_laevigata | RLG00000010131 RLG00000010157 RLG00000010161 |
| rosa_multiflora | Rmu_co8274927.1_g000001 Rmu_sc0001942.1_g000008 Rmu_sc0001942.1_g000027 Rmu_sc0001942.1_g000051 Rmu_sc0002785.1_g000008 Rmu_sc0003786.1_g000023 Rmu_sc0006648.1_g000016 Rmu_sc0036937.1_g000001 Rmu_ssc0000272.1_g000008 Rmu_ssc0000272.1_g000009 |
| rosa_roxburghii | Rroxscaffold_5G00333960 Rroxscaffold_6G00392780 |
| rosa_samantha | Rh1AG049600 Rh4BG009300 Rh4CG014300 Rh4DG010100 |
| rosa_wichuraiana | Rw4G000030 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 1137 |
| Acc65I | GGTACC | 1 cut(s) | 336 |
| AccB1I | GGYRCC | 1 cut(s) | 336 |
| AccBSI | CCGCTC | 1 cut(s) | 277 |
| AciI | CCGC | 3 cut(s) | 275, 288, 494 |
| AclWI | GGATC | 2 cut(s) | 689, 1341 |
| AcsI | RAATTY | 2 cut(s) | 155, 541 |
| AfaI | GTAC | 3 cut(s) | 338, 653, 1464 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 181, 346, 449 |
| AflII | CTTAAG | 1 cut(s) | 1337 |
| AflIII | ACRYGT | 3 cut(s) | 1413, 1560, 1609 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 712 |
| AjiI | CACGTC | 2 cut(s) | 709, 1429 |
| AjnI | CCWGG | 1 cut(s) | 851 |
| AluBI | AGCT | 9 cut(s) | 139, 244, 263, 365, 550, 859, 1079, 1166, 1489 |
| AluI | AGCT | 9 cut(s) | 139, 244, 263, 365, 550, 859, 1079, 1166, 1489 |
| Alw21I | GWGCWC | 4 cut(s) | 92, 552, 1270, 1395 |
| Alw26I | GTCTC | 4 cut(s) | 135, 243, 278, 699 |
| Alw44I | GTGCAC | 2 cut(s) | 88, 1266 |
| AlwI | GGATC | 2 cut(s) | 689, 1341 |
| Ama87I | CYCGRG | 1 cut(s) | 134 |
| ApaLI | GTGCAC | 2 cut(s) | 88, 1266 |
| ApeKI | GCWGC | 3 cut(s) | 61, 356, 1286 |
| ApoI | RAATTY | 2 cut(s) | 155, 541 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 438, 1532 |
| Asp718I | GGTACC | 1 cut(s) | 336 |
| AspLEI | GCGC | 1 cut(s) | 273 |
| AsuHPI | GGTGA | 4 cut(s) | 115, 634, 754, 1001 |
| AvaI | CYCGRG | 1 cut(s) | 134 |
| BaeGI | GKGCMC | 2 cut(s) | 92, 1270 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 824, 857 |
| BanI | GGYRCC | 1 cut(s) | 336 |
| BanII | GRGCYC | 1 cut(s) | 552 |
| Bbv12I | GWGCWC | 4 cut(s) | 92, 552, 1270, 1395 |
| BbvI | GCAGC | 3 cut(s) | 48, 343, 1273 |
| BccI | CCATC | 4 cut(s) | 349, 365, 556, 883 |
| BciT130I | CCWGG | 1 cut(s) | 853 |
| BcoDI | GTCTC | 4 cut(s) | 135, 243, 278, 699 |
| BfaI | CTAG | 2 cut(s) | 860, 870 |
| BfmI | CTRYAG | 1 cut(s) | 316 |
| BfoI | RGCGCY | 1 cut(s) | 274 |
| BfrI | CTTAAG | 1 cut(s) | 1337 |
| BisI | GCNGC | 3 cut(s) | 62, 357, 1287 |
| BlpI | GCTNAGC | 1 cut(s) | 278 |
| BlsI | GCNGC | 3 cut(s) | 63, 358, 1288 |
| Bme1390I | CCNGG | 1 cut(s) | 853 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 712 |
| BmeT110I | CYCGRG | 1 cut(s) | 134 |
| BmgBI | CACGTC | 2 cut(s) | 709, 1429 |
| BmiI | GGNNCC | 3 cut(s) | 14, 338, 441 |
| BmrFI | CCNGG | 1 cut(s) | 853 |
| BmrI | ACTGGG | 2 cut(s) | 104, 157 |
| BmsI | GCATC | 2 cut(s) | 499, 658 |
| BmuI | ACTGGG | 2 cut(s) | 104, 157 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 278 |
| BpuEI | CTTGAG | 4 cut(s) | 345, 1160, 1277, 1286 |
| Bsa29I | ATCGAT | 1 cut(s) | 306 |
| BsaAI | YACGTR | 1 cut(s) | 1466 |
| BsaI | GGTCTC | 2 cut(s) | 243, 278 |
| BsaJI | CCNNGG | 1 cut(s) | 851 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 115, 145, 582, 612, 1099, 1129 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 181, 346, 449 |
| Bse1I | ACTGG | 3 cut(s) | 110, 152, 351 |
| Bse3DI | GCAATG | 3 cut(s) | 436, 864, 1486 |
| BseBI | CCWGG | 1 cut(s) | 853 |
| BseCI | ATCGAT | 1 cut(s) | 306 |
| BseDI | CCNNGG | 1 cut(s) | 851 |
| BseGI | GGATG | 5 cut(s) | 376, 490, 907, 1186, 1389 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 181, 346, 449 |
| BseMI | GCAATG | 3 cut(s) | 436, 864, 1486 |
| BseMII | CTCAG | 4 cut(s) | 90, 251, 259, 292 |
| BseNI | ACTGG | 3 cut(s) | 110, 152, 351 |
| BseRI | GAGGAG | 5 cut(s) | 603, 643, 715, 899, 1328 |
| BseSI | GKGCMC | 2 cut(s) | 92, 1270 |
| BseXI | GCAGC | 3 cut(s) | 48, 343, 1273 |
| BseYI | CCCAGC | 1 cut(s) | 254 |
| BshNI | GGYRCC | 1 cut(s) | 336 |
| BshVI | ATCGAT | 1 cut(s) | 306 |
| BsiHKAI | GWGCWC | 4 cut(s) | 92, 552, 1270, 1395 |
| BsiHKCI | CYCGRG | 1 cut(s) | 134 |
| BsiSI | CCGG | 3 cut(s) | 497, 1226, 1331 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 181, 346, 449 |
| BsmAI | GTCTC | 4 cut(s) | 135, 243, 278, 699 |
| BsmBI | CGTCTC | 1 cut(s) | 699 |
| Bso31I | GGTCTC | 2 cut(s) | 243, 278 |
| BsoBI | CYCGRG | 1 cut(s) | 134 |
| Bsp1286I | GDGCHC | 4 cut(s) | 92, 552, 1270, 1395 |
| Bsp143I | GATC | 2 cut(s) | 681, 1333 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 278 |
| BspACI | CCGC | 3 cut(s) | 275, 288, 494 |
| BspCNI | CTCAG | 4 cut(s) | 91, 250, 258, 291 |
| BspDI | ATCGAT | 1 cut(s) | 306 |
| BspHI | TCATGA | 1 cut(s) | 952 |
| BspLI | GGNNCC | 3 cut(s) | 14, 338, 441 |
| BspPI | GGATC | 2 cut(s) | 689, 1341 |
| BspT107I | GGYRCC | 1 cut(s) | 336 |
| BspTI | CTTAAG | 1 cut(s) | 1337 |
| BspTNI | GGTCTC | 2 cut(s) | 243, 278 |
| BsrBI | CCGCTC | 1 cut(s) | 277 |
| BsrDI | GCAATG | 3 cut(s) | 436, 864, 1486 |
| BsrI | ACTGG | 3 cut(s) | 110, 152, 351 |
| BssECI | CCNNGG | 1 cut(s) | 851 |
| BssMI | GATC | 2 cut(s) | 681, 1333 |
| Bst2UI | CCWGG | 1 cut(s) | 853 |
| Bst4CI | ACNGT | 3 cut(s) | 398, 902, 1024 |
| Bst6I | CTCTTC | 5 cut(s) | 37, 413, 1275, 1373, 1580 |
| BstAFI | CTTAAG | 1 cut(s) | 1337 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 668 |
| BstBAI | YACGTR | 1 cut(s) | 1466 |
| BstC8I | GCNNGC | 6 cut(s) | 275, 636, 765, 1047, 1328, 1501 |
| BstDEI | CTNAG | 4 cut(s) | 99, 237, 245, 278 |
| BstF5I | GGATG | 5 cut(s) | 376, 490, 907, 1186, 1389 |
| BstH2I | RGCGCY | 1 cut(s) | 274 |
| BstHHI | GCGC | 1 cut(s) | 273 |
| BstKTI | GATC | 2 cut(s) | 684, 1336 |
| BstMAI | GTCTC | 4 cut(s) | 135, 243, 278, 699 |
| BstMBI | GATC | 2 cut(s) | 681, 1333 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 279, 362, 668 |
| BstNI | CCWGG | 1 cut(s) | 853 |
| BstNSI | RCATGY | 5 cut(s) | 767, 1049, 1417, 1564, 1613 |
| BstSCI | CCNGG | 1 cut(s) | 851 |
| BstSFI | CTRYAG | 1 cut(s) | 316 |
| BstSLI | GKGCMC | 2 cut(s) | 92, 1270 |
| BstV1I | GCAGC | 3 cut(s) | 48, 343, 1273 |
| BstX2I | RGATCY | 1 cut(s) | 1333 |
| BstYI | RGATCY | 1 cut(s) | 1333 |
| Bsu15I | ATCGAT | 1 cut(s) | 306 |
| BsuTUI | ATCGAT | 1 cut(s) | 306 |
| BtrI | CACGTC | 2 cut(s) | 709, 1429 |
| BtsCI | GGATG | 5 cut(s) | 376, 490, 907, 1186, 1389 |
| BtsIMutI | CAGTG | 2 cut(s) | 121, 344 |
| Cac8I | GCNNGC | 6 cut(s) | 275, 636, 765, 1047, 1328, 1501 |
| CciI | TCATGA | 1 cut(s) | 952 |
| CfoI | GCGC | 1 cut(s) | 273 |
| ClaI | ATCGAT | 1 cut(s) | 306 |
| CseI | GACGC | 2 cut(s) | 53, 1246 |
| Csp6I | GTAC | 3 cut(s) | 337, 652, 1463 |
| CviQI | GTAC | 3 cut(s) | 337, 652, 1463 |
| DdeI | CTNAG | 4 cut(s) | 99, 237, 245, 278 |
| DpnI | GATC | 2 cut(s) | 683, 1335 |
| DpnII | GATC | 2 cut(s) | 681, 1333 |
| DriI | GACNNNNNGTC | 1 cut(s) | 712 |
| Eam1104I | CTCTTC | 5 cut(s) | 37, 413, 1275, 1373, 1580 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 712 |
| EarI | CTCTTC | 5 cut(s) | 37, 413, 1275, 1373, 1580 |
| EciI | GGCGGA | 1 cut(s) | 483 |
| Ecl136II | GAGCTC | 1 cut(s) | 550 |
| Eco24I | GRGCYC | 1 cut(s) | 552 |
| Eco31I | GGTCTC | 2 cut(s) | 243, 278 |
| Eco53kI | GAGCTC | 1 cut(s) | 550 |
| Eco88I | CYCGRG | 1 cut(s) | 134 |
| EcoICRI | GAGCTC | 1 cut(s) | 550 |
| EcoRII | CCWGG | 1 cut(s) | 851 |
| EcoT22I | ATGCAT | 2 cut(s) | 673, 1047 |
| EcoT38I | GRGCYC | 1 cut(s) | 552 |
| Esp3I | CGTCTC | 1 cut(s) | 699 |
| FauI | CCCGC | 1 cut(s) | 282 |
| Fnu4HI | GCNGC | 3 cut(s) | 62, 357, 1287 |
| FokI | GGATG | 5 cut(s) | 383, 477, 894, 1193, 1396 |
| FriOI | GRGCYC | 1 cut(s) | 552 |
| Fsp4HI | GCNGC | 3 cut(s) | 62, 357, 1287 |
| FspBI | CTAG | 2 cut(s) | 860, 870 |
| GlaI | GCGC | 1 cut(s) | 272 |
| GluI | GCNGC | 3 cut(s) | 62, 357, 1287 |
| GsaI | CCCAGC | 1 cut(s) | 258 |
| HaeII | RGCGCY | 1 cut(s) | 274 |
| HapII | CCGG | 3 cut(s) | 497, 1226, 1331 |
| HgaI | GACGC | 2 cut(s) | 53, 1246 |
| HhaI | GCGC | 1 cut(s) | 273 |
| Hin6I | GCGC | 1 cut(s) | 271 |
| HinP1I | GCGC | 1 cut(s) | 271 |
| HincII | GTYRAC | 1 cut(s) | 520 |
| HindII | GTYRAC | 1 cut(s) | 520 |
| HindIII | AAGCTT | 2 cut(s) | 1077, 1487 |
| HinfI | GANTC | 7 cut(s) | 128, 321, 453, 794, 808, 1319, 1533 |
| HpaII | CCGG | 3 cut(s) | 497, 1226, 1331 |
| HphI | GGTGA | 4 cut(s) | 115, 634, 754, 1001 |
| Hpy166II | GTNNAC | 4 cut(s) | 90, 520, 848, 1268 |
| Hpy188I | TCNGA | 7 cut(s) | 240, 248, 385, 452, 538, 831, 1542 |
| Hpy188III | TCNNGA | 9 cut(s) | 134, 191, 325, 368, 911, 953, 1121, 1187, 1303 |
| Hpy8I | GTNNAC | 4 cut(s) | 90, 520, 848, 1268 |
| Hpy99I | CGWCG | 2 cut(s) | 302, 1430 |
| HpyAV | CCTTC | 8 cut(s) | 222, 739, 991, 1051, 1163, 1433, 1522, 1537 |
| HpyCH4III | ACNGT | 3 cut(s) | 398, 902, 1024 |
| HpyCH4IV | ACGT | 3 cut(s) | 708, 1428, 1465 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 279, 362, 668 |
| HpyF3I | CTNAG | 4 cut(s) | 99, 237, 245, 278 |
| HpySE526I | ACGT | 3 cut(s) | 708, 1428, 1465 |
| HspAI | GCGC | 1 cut(s) | 271 |
| KpnI | GGTACC | 1 cut(s) | 340 |
| Kzo9I | GATC | 2 cut(s) | 681, 1333 |
| Lsp1109I | GCAGC | 3 cut(s) | 48, 343, 1273 |
| LweI | GCATC | 2 cut(s) | 499, 658 |
| MaeI | CTAG | 2 cut(s) | 860, 870 |
| MaeII | ACGT | 3 cut(s) | 708, 1428, 1465 |
| MaeIII | GTNAC | 4 cut(s) | 65, 121, 598, 1024 |
| MalI | GATC | 2 cut(s) | 683, 1335 |
| MbiI | CCGCTC | 1 cut(s) | 277 |
| MboI | GATC | 2 cut(s) | 681, 1333 |
| MfeI | CAATTG | 1 cut(s) | 223 |
| MflI | RGATCY | 1 cut(s) | 1333 |
| MhlI | GDGCHC | 4 cut(s) | 92, 552, 1270, 1395 |
| MluCI | AATT | 5 cut(s) | 155, 223, 541, 582, 1574 |
| MlyI | GAGTC | 1 cut(s) | 137 |
| MmeI | TCCRAC | 1 cut(s) | 1608 |
| Mph1103I | ATGCAT | 2 cut(s) | 673, 1047 |
| MroXI | GAANNNNTTC | 2 cut(s) | 438, 1532 |
| MseI | TTAA | 4 cut(s) | 789, 1338, 1419, 1622 |
| MslI | CAYNNNNRTG | 3 cut(s) | 728, 768, 912 |
| MspA1I | CMGCKG | 1 cut(s) | 290 |
| MspCI | CTTAAG | 1 cut(s) | 1337 |
| MspI | CCGG | 3 cut(s) | 497, 1226, 1331 |
| MspR9I | CCNGG | 1 cut(s) | 853 |
| MunI | CAATTG | 1 cut(s) | 223 |
| MvaI | CCWGG | 1 cut(s) | 853 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 279, 362, 668 |
| NdeII | GATC | 2 cut(s) | 681, 1333 |
| NlaIV | GGNNCC | 3 cut(s) | 14, 338, 441 |
| NmuCI | GTSAC | 3 cut(s) | 65, 121, 1024 |
| NsiI | ATGCAT | 2 cut(s) | 673, 1047 |
| NspI | RCATGY | 5 cut(s) | 767, 1049, 1417, 1564, 1613 |
| PaeI | GCATGC | 2 cut(s) | 767, 1049 |
| PagI | TCATGA | 1 cut(s) | 952 |
| PciI | ACATGT | 3 cut(s) | 1413, 1560, 1609 |
| PdmI | GAANNNNTTC | 2 cut(s) | 438, 1532 |
| PfeI | GAWTC | 6 cut(s) | 321, 453, 794, 808, 1319, 1533 |
| PkrI | GCNGC | 3 cut(s) | 63, 358, 1288 |
| PleI | GAGTC | 1 cut(s) | 136 |
| PpsI | GAGTC | 1 cut(s) | 136 |
| Ppu21I | YACGTR | 1 cut(s) | 1466 |
| PscI | ACATGT | 3 cut(s) | 1413, 1560, 1609 |
| PsiI | TTATAA | 1 cut(s) | 1137 |
| Psp124BI | GAGCTC | 1 cut(s) | 552 |
| Psp6I | CCWGG | 1 cut(s) | 851 |
| PspFI | CCCAGC | 1 cut(s) | 254 |
| PspGI | CCWGG | 1 cut(s) | 851 |
| PspN4I | GGNNCC | 3 cut(s) | 14, 338, 441 |
| PsuI | RGATCY | 1 cut(s) | 1333 |
| RsaI | GTAC | 3 cut(s) | 338, 653, 1464 |
| RsaNI | GTAC | 3 cut(s) | 337, 652, 1463 |
| RseI | CAYNNNNRTG | 3 cut(s) | 728, 768, 912 |
| SacI | GAGCTC | 1 cut(s) | 552 |
| SaqAI | TTAA | 4 cut(s) | 789, 1338, 1419, 1622 |
| SatI | GCNGC | 3 cut(s) | 62, 357, 1287 |
| Sau3AI | GATC | 2 cut(s) | 681, 1333 |
| SchI | GAGTC | 1 cut(s) | 137 |
| ScrFI | CCNGG | 1 cut(s) | 853 |
| SduI | GDGCHC | 4 cut(s) | 92, 552, 1270, 1395 |
| SfaNI | GCATC | 2 cut(s) | 499, 658 |
| SfcI | CTRYAG | 1 cut(s) | 316 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 728, 768, 912 |
| SmlI | CTYRAG | 5 cut(s) | 360, 1175, 1292, 1301, 1337 |
| SmoI | CTYRAG | 5 cut(s) | 360, 1175, 1292, 1301, 1337 |
| SphI | GCATGC | 2 cut(s) | 767, 1049 |
| Sse9I | AATT | 5 cut(s) | 155, 223, 541, 582, 1574 |
| SsiI | CCGC | 3 cut(s) | 275, 288, 494 |
| SspMI | CTAG | 2 cut(s) | 860, 870 |
| SstI | GAGCTC | 1 cut(s) | 552 |
| StyD4I | CCNGG | 1 cut(s) | 851 |
| TaaI | ACNGT | 3 cut(s) | 398, 902, 1024 |
| TaiI | ACGT | 3 cut(s) | 711, 1431, 1468 |
| TaqI | TCGA | 5 cut(s) | 162, 231, 306, 684, 1526 |
| TasI | AATT | 5 cut(s) | 155, 223, 541, 582, 1574 |
| TfiI | GAWTC | 6 cut(s) | 321, 453, 794, 808, 1319, 1533 |
| Tru1I | TTAA | 4 cut(s) | 789, 1338, 1419, 1622 |
| Tru9I | TTAA | 4 cut(s) | 789, 1338, 1419, 1622 |
| TscAI | CASTG | 2 cut(s) | 121, 351 |
| TseFI | GTSAC | 3 cut(s) | 65, 121, 1024 |
| TseI | GCWGC | 3 cut(s) | 61, 356, 1286 |
| Tsp45I | GTSAC | 3 cut(s) | 65, 121, 1024 |
| TspDTI | ATGAA | 8 cut(s) | 447, 448, 786, 896, 925, 993, 1010, 1115 |
| TspRI | CASTG | 2 cut(s) | 121, 351 |
| Vha464I | CTTAAG | 1 cut(s) | 1337 |
| VneI | GTGCAC | 2 cut(s) | 88, 1266 |
| XapI | RAATTY | 2 cut(s) | 155, 541 |
| XceI | RCATGY | 5 cut(s) | 767, 1049, 1417, 1564, 1613 |
| XmnI | GAANNNNTTC | 2 cut(s) | 438, 1532 |
| XspI | CTAG | 2 cut(s) | 860, 870 |
| Zsp2I | ATGCAT | 2 cut(s) | 673, 1047 |