Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006648.1

Orthogroup ID

OG0006285

Physical Location & Seq

Genomic Coordinates Forward (+)

77310 .. 78938

Gene Structure 1629 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006648.1_g000016.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1629 bp

atgctcacaaggctccacaatctcaagctccattcaacttcaaaaacccacatcaatgccctgcgttacttcttaaaccctctatgcaccacaaccgaggtcgccgagtcaccggaccttccaagctgggtaaagttcttcgacaccaaccacccaaaacacgcagcttccgacgacgacgacttcgtcatcccttcactggccagttgggtcgaaacccacaacctaaaccaccccaccaaacctcccaagccctcaacttccgataccgacgacctcgaaagcatcagtagaatcttgaaagtccggtacccatcgccggaaaatgcagctgaatcgttggaaaggtataattttgagttatcaaacggtttggtgcaacgggttttgatgaggtttagcaatgattgcgtcccggcgttggggtttttcacttgggcaaaacgtcgaacaggttataggcatcttcctgaggcctataactccatggttgatgtattgggaaagtccaagaattttgaccttatgtgggattttgttgaggaaatggatcaaattggagatgggtatgtgacgttggagacaatgacaaaggtgtttaggagacttgcaaaggctggtaagcaccaagaggcaatcgaggcgtttcggggcatggagcgattcggattgagcaaagatgttgtggcattgaacactctactgaatgcattggtgaaggagagaagcgttgagcttgcccaagaagctttcttggagttcaaggaatctatacctgtgaattctcacagctttaatgttttgatacatggctggtgtaagaataggaagttggatattgctaggaacacaatggaggagatggagagacacgggtttcacccggatgttttctcttatacttgtttggttgaggcctattgtagtgacaaggattttcgcaaagttgatgaagttcttagtgaaatgaagggcaaggcttgcgagccgaatgctgtgacatacactatcgtaatgcatgctttggggaaggcgagagagataaccaaggctttggaggtttatgagttgatgaaagggaatggggttgttcctgatgtttcgttttacagctctttgatttacattcttggtaaagccggaaggcttaaggatgttcaagaagtggttgaggacatgacaaagcagggtgtaaaaccggatgctatgacctataacaccctgatttcttgtgcttgcgagcattcgcaggaagaggctgctctcaagttgctgaagaaaatggaggaggattcatgcaagccggatgttcagacatacgccccattgttgaagatgtgctgcagaaagaagaggatgaaggtgctctactttttgttagaccacatgtttaagaatgacattagtatcgacgctggaacctatgcgctcttggtacgtgggatgtgcaagaatggtaaacccgaaaacgcttgctccttctttgaggagatggcattgaagggttttgttcccaaggacagtacatacaagatgttgctagaggaattgcaggggaagaatatggagaaagagaagaaacatattgagaagttgatgttgcaagcaaaagagcaaggaaacgtataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

542

Amino Acids

61.89

Weight (kDa)

6.52

Isoelectric Point (pI)

35.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006285)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22670
fragaria_vesca	FvH4_4g00721
malus_domestica	MD13G1197300.v1.1
prunus_persica	Prupe.1G018400_v2.0.a1
pyrus_communis	pycom13g17020
rosa_chinensis	RchiOBHm_Chr1g0322101 RchiOBHm_Chr4g0386451
rosa_laevigata	RLG00000010131 RLG00000010157 RLG00000010161
rosa_multiflora	Rmu_co8274927.1_g000001 Rmu_sc0001942.1_g000008 Rmu_sc0001942.1_g000027 Rmu_sc0001942.1_g000051 Rmu_sc0002785.1_g000008 Rmu_sc0003786.1_g000023 Rmu_sc0006648.1_g000016 Rmu_sc0036937.1_g000001 Rmu_ssc0000272.1_g000008 Rmu_ssc0000272.1_g000009
rosa_roxburghii	Rroxscaffold_5G00333960 Rroxscaffold_6G00392780
rosa_samantha	Rh1AG049600 Rh4BG009300 Rh4CG014300 Rh4DG010100
rosa_wichuraiana	Rw4G000030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	185
Acc65I	GGTACC	1 cut(s)	309
AccB1I	GGYRCC	1 cut(s)	309
AclWI	GGATC	1 cut(s)	558
AcoI	YGGCCR	1 cut(s)	201
AcsI	RAATTY	2 cut(s)	514, 781
AcuI	CTGAAG	1 cut(s)	1295
AfaI	GTAC	3 cut(s)	311, 1437, 1525
AfiI	CCNNNNNNNGG	5 cut(s)	199, 319, 421, 422, 529
AflII	CTTAAG	1 cut(s)	1148
AflIII	ACRYGT	1 cut(s)	1386
AgsI	TTSAA	8 cut(s)	36, 42, 301, 694, 763, 1160, 1333, 1501
AjuI	GAANNNNNNNTTGG	2 cut(s)	815, 847
AluBI	AGCT	8 cut(s)	28, 126, 167, 332, 736, 749, 792, 1113
AluI	AGCT	8 cut(s)	28, 126, 167, 332, 736, 749, 792, 1113
Alw21I	GWGCWC	1 cut(s)	1368
Alw26I	GTCTC	3 cut(s)	575, 598, 862
AlwI	GGATC	1 cut(s)	558
AoxI	GGCC	3 cut(s)	201, 474, 915
ApeKI	GCWGC	4 cut(s)	164, 329, 1259, 1341
ApoI	RAATTY	2 cut(s)	514, 781
ArsI	GACNNNNNNTTYG	2 cut(s)	167, 199
Asp718I	GGTACC	1 cut(s)	309
AspLEI	GCGC	1 cut(s)	1429
AspS9I	GGNCC	1 cut(s)	115
AsuC2I	CCSGG	2 cut(s)	416, 884
AsuHPI	GGTGA	3 cut(s)	102, 727, 872
AvaII	GGWCC	1 cut(s)	115
AxyI	CCTNAGG	1 cut(s)	471
BaeI	ACNNNNGTAYC	2 cut(s)	1390, 1423
BalI	TGGCCA	1 cut(s)	203
BanI	GGYRCC	1 cut(s)	309
BarI	GAAGNNNNNNTAC	2 cut(s)	1352, 1384
Bbv12I	GWGCWC	1 cut(s)	1368
BbvI	GCAGC	4 cut(s)	176, 341, 1246, 1328
BccI	CCATC	4 cut(s)	322, 557, 856, 1486
BcgI	CGANNNNNNTGC	4 cut(s)	318, 352, 974, 1008
BcnI	CCSGG	2 cut(s)	416, 884
BcoDI	GTCTC	3 cut(s)	575, 598, 862
BfaI	CTAG	2 cut(s)	843, 1541
BfmI	CTRYAG	1 cut(s)	1342
BfrI	CTTAAG	1 cut(s)	1148
BisI	GCNGC	4 cut(s)	165, 330, 1260, 1342
BlsI	GCNGC	4 cut(s)	166, 331, 1261, 1343
Bme1390I	CCNGG	2 cut(s)	416, 884
Bme18I	GGWCC	1 cut(s)	115
BmgT120I	GGNCC	1 cut(s)	115
BmiI	GGNNCC	3 cut(s)	14, 311, 1420
BmrFI	CCNGG	2 cut(s)	416, 884
BmsI	GCATC	3 cut(s)	294, 472, 1192
BpuEI	CTTGAG	2 cut(s)	8, 1250
BpuMI	CCSGG	2 cut(s)	416, 884
BsaAI	YACGTR	1 cut(s)	1439
BsaJI	CCNNGG	4 cut(s)	96, 486, 1047, 1515
BsaWI	WCCGGW	3 cut(s)	112, 306, 1198
BsaXI	ACNNNNNCTCC	4 cut(s)	229, 259, 1460, 1490
Bsc4I	CCNNNNNNNGG	5 cut(s)	199, 319, 421, 422, 529
Bse1I	ACTGG	2 cut(s)	204, 204
Bse21I	CCTNAGG	1 cut(s)	471
Bse3DI	GCAATG	1 cut(s)	409
BseDI	CCNNGG	4 cut(s)	96, 486, 1047, 1515
BseGI	GGATG	7 cut(s)	189, 892, 1159, 1207, 1312, 1362, 1449
BseLI	CCNNNNNNNGG	5 cut(s)	199, 319, 421, 422, 529
BseMI	GCAATG	1 cut(s)	409
BseMII	CTCAG	1 cut(s)	462
BseNI	ACTGG	2 cut(s)	204, 204
BseRI	GAGGAG	3 cut(s)	872, 1301, 1502
BseXI	GCAGC	4 cut(s)	176, 341, 1246, 1328
BseYI	CCCAGC	1 cut(s)	126
BshFI	GGCC	3 cut(s)	203, 476, 917
BshNI	GGYRCC	1 cut(s)	309
BsiHKAI	GWGCWC	1 cut(s)	1368
BsiSI	CCGG	8 cut(s)	113, 307, 320, 416, 884, 1140, 1199, 1304
BslFI	GGGAC	1 cut(s)	398
BslI	CCNNNNNNNGG	5 cut(s)	199, 319, 421, 422, 529
BsmAI	GTCTC	3 cut(s)	575, 598, 862
BsmFI	GGGAC	1 cut(s)	398
BsmI	GAATGC	3 cut(s)	712, 997, 1243
BsnI	GGCC	3 cut(s)	203, 476, 917
Bsp1286I	GDGCHC	1 cut(s)	1368
Bsp143I	GATC	1 cut(s)	550
Bsp19I	CCATGG	1 cut(s)	486
BspANI	GGCC	3 cut(s)	203, 476, 917
BspCNI	CTCAG	1 cut(s)	463
BspLI	GGNNCC	3 cut(s)	14, 311, 1420
BspMAI	CTGCAG	1 cut(s)	1346
BspPI	GGATC	1 cut(s)	558
BspT107I	GGYRCC	1 cut(s)	309
BspTI	CTTAAG	1 cut(s)	1148
BsrDI	GCAATG	1 cut(s)	409
BsrI	ACTGG	2 cut(s)	204, 204
BssECI	CCNNGG	4 cut(s)	96, 486, 1047, 1515
BssMI	GATC	1 cut(s)	550
BssT1I	CCWWGG	3 cut(s)	486, 1047, 1515
Bst4CI	ACNGT	2 cut(s)	371, 1523
Bst6I	CTCTTC	2 cut(s)	1248, 1346
BstAFI	CTTAAG	1 cut(s)	1148
BstAPI	GCANNNNNTGC	2 cut(s)	408, 981
BstBAI	YACGTR	1 cut(s)	1439
BstC8I	GCNNGC	9 cut(s)	738, 982, 986, 1020, 1237, 1241, 1301, 1474, 1605
BstDEI	CTNAG	2 cut(s)	471, 959
BstDSI	CCRYGG	1 cut(s)	486
BstF5I	GGATG	7 cut(s)	189, 892, 1159, 1207, 1312, 1362, 1449
BstHHI	GCGC	1 cut(s)	1429
BstKTI	GATC	1 cut(s)	553
BstMAI	GTCTC	3 cut(s)	575, 598, 862
BstMBI	GATC	1 cut(s)	550
BstMWI	GCNNNNNNNGC	5 cut(s)	10, 408, 641, 746, 981
BstNSI	RCATGY	2 cut(s)	1022, 1390
BstSCI	CCNGG	2 cut(s)	414, 882
BstSFI	CTRYAG	1 cut(s)	1342
BstV1I	GCAGC	4 cut(s)	176, 341, 1246, 1328
BstXI	CCANNNNNNTGG	1 cut(s)	1054
Bsu36I	CCTNAGG	1 cut(s)	471
BsuRI	GGCC	3 cut(s)	203, 476, 917
BtgI	CCRYGG	1 cut(s)	486
BtgZI	GCGATG	1 cut(s)	300
BtsCI	GGATG	7 cut(s)	189, 892, 1159, 1207, 1312, 1362, 1449
BtsIMutI	CAGTG	1 cut(s)	197
Cac8I	GCNNGC	9 cut(s)	738, 982, 986, 1020, 1237, 1241, 1301, 1474, 1605
CfoI	GCGC	1 cut(s)	1429
Cfr13I	GGNCC	1 cut(s)	115
CseI	GACGC	2 cut(s)	400, 1421
Csp6I	GTAC	3 cut(s)	310, 1436, 1524
CviAII	CATG	7 cut(s)	487, 655, 809, 1019, 1177, 1296, 1387
CviQI	GTAC	3 cut(s)	310, 1436, 1524
DdeI	CTNAG	2 cut(s)	471, 959
DpnI	GATC	1 cut(s)	552
DpnII	GATC	1 cut(s)	550
DrdI	GACNNNNNNGTC	1 cut(s)	185
DseDI	GACNNNNNNGTC	1 cut(s)	185
EaeI	YGGCCR	1 cut(s)	201
Eam1104I	CTCTTC	2 cut(s)	1248, 1346
EarI	CTCTTC	2 cut(s)	1248, 1346
Eco130I	CCWWGG	3 cut(s)	486, 1047, 1515
Eco147I	AGGCCT	2 cut(s)	476, 917
Eco47I	GGWCC	1 cut(s)	115
Eco57I	CTGAAG	1 cut(s)	1295
Eco81I	CCTNAGG	1 cut(s)	471
EcoRI	GAATTC	1 cut(s)	781
EcoT14I	CCWWGG	3 cut(s)	486, 1047, 1515
EcoT22I	ATGCAT	2 cut(s)	712, 1020
ErhI	CCWWGG	3 cut(s)	486, 1047, 1515
FaeI	CATG	7 cut(s)	490, 658, 812, 1022, 1180, 1299, 1390
FaqI	GGGAC	1 cut(s)	398
FatI	CATG	7 cut(s)	486, 654, 808, 1018, 1176, 1295, 1386
Fnu4HI	GCNGC	4 cut(s)	165, 330, 1260, 1342
FokI	GGATG	7 cut(s)	176, 899, 1166, 1214, 1319, 1369, 1456
Fsp4HI	GCNGC	4 cut(s)	165, 330, 1260, 1342
FspBI	CTAG	2 cut(s)	843, 1541
GlaI	GCGC	1 cut(s)	1428
GluI	GCNGC	4 cut(s)	165, 330, 1260, 1342
GsaI	CCCAGC	1 cut(s)	130
HaeIII	GGCC	3 cut(s)	203, 476, 917
HapII	CCGG	8 cut(s)	113, 307, 320, 416, 884, 1140, 1199, 1304
HgaI	GACGC	2 cut(s)	400, 1421
HhaI	GCGC	1 cut(s)	1429
Hin1II	CATG	7 cut(s)	490, 658, 812, 1022, 1180, 1299, 1390
Hin6I	GCGC	1 cut(s)	1427
HinP1I	GCGC	1 cut(s)	1427
HindIII	AAGCTT	1 cut(s)	747
HinfI	GANTC	6 cut(s)	107, 294, 335, 663, 767, 1292
HpaII	CCGG	8 cut(s)	113, 307, 320, 416, 884, 1140, 1199, 1304
HphI	GGTGA	3 cut(s)	102, 727, 872
Hpy166II	GTNNAC	1 cut(s)	1460
Hpy188I	TCNGA	4 cut(s)	172, 265, 668, 1314
Hpy188III	TCNNGA	4 cut(s)	298, 470, 1094, 1160
Hpy8I	GTNNAC	1 cut(s)	1460
Hpy99I	CGWCG	6 cut(s)	176, 179, 182, 275, 450, 1415
HpyAV	CCTTC	9 cut(s)	128, 204, 712, 964, 1024, 1137, 1354, 1489, 1495
HpyCH4III	ACNGT	2 cut(s)	371, 1523
HpyCH4IV	ACGT	4 cut(s)	445, 575, 1438, 1623
HpyF10VI	GCNNNNNNNGC	5 cut(s)	10, 408, 641, 746, 981
HpyF3I	CTNAG	2 cut(s)	471, 959
HpySE526I	ACGT	4 cut(s)	445, 575, 1438, 1623
Hsp92II	CATG	7 cut(s)	490, 658, 812, 1022, 1180, 1299, 1390
HspAI	GCGC	1 cut(s)	1427
KpnI	GGTACC	1 cut(s)	313
Kzo9I	GATC	1 cut(s)	550
LmnI	GCTCC	4 cut(s)	18, 33, 658, 1481
Lsp1109I	GCAGC	4 cut(s)	176, 341, 1246, 1328
LweI	GCATC	3 cut(s)	294, 472, 1192
MaeI	CTAG	2 cut(s)	843, 1541
MaeII	ACGT	4 cut(s)	445, 575, 1438, 1623
MaeIII	GTNAC	5 cut(s)	65, 108, 571, 926, 997
MalI	GATC	1 cut(s)	552
MboI	GATC	1 cut(s)	550
MboII	GAAGA	8 cut(s)	130, 458, 1265, 1288, 1345, 1363, 1570, 1588
MhlI	GDGCHC	1 cut(s)	1368
MlsI	TGGCCA	1 cut(s)	203
MluCI	AATT	5 cut(s)	352, 514, 555, 781, 1547
MluNI	TGGCCA	1 cut(s)	203
MlyI	GAGTC	1 cut(s)	116
MmeI	TCCRAC	4 cut(s)	195, 321, 558, 813
Mox20I	TGGCCA	1 cut(s)	203
Mph1103I	ATGCAT	2 cut(s)	712, 1020
MscI	TGGCCA	1 cut(s)	203
MseI	TTAA	4 cut(s)	74, 795, 1149, 1392
MslI	CAYNNNNRTG	2 cut(s)	54, 885
Msp20I	TGGCCA	1 cut(s)	203
MspA1I	CMGCKG	1 cut(s)	332
MspCI	CTTAAG	1 cut(s)	1148
MspI	CCGG	8 cut(s)	113, 307, 320, 416, 884, 1140, 1199, 1304
MspR9I	CCNGG	2 cut(s)	416, 884
Mva1269I	GAATGC	3 cut(s)	712, 997, 1243
MwoI	GCNNNNNNNGC	5 cut(s)	10, 408, 641, 746, 981
NciI	CCSGG	2 cut(s)	416, 884
NcoI	CCATGG	1 cut(s)	486
NdeII	GATC	1 cut(s)	550
NlaIII	CATG	7 cut(s)	490, 658, 812, 1022, 1180, 1299, 1390
NlaIV	GGNNCC	3 cut(s)	14, 311, 1420
NmeAIII	GCCGAG	1 cut(s)	130
NmuCI	GTSAC	4 cut(s)	108, 571, 926, 997
NsiI	ATGCAT	2 cut(s)	712, 1020
NspI	RCATGY	2 cut(s)	1022, 1390
PaeI	GCATGC	1 cut(s)	1022
PceI	AGGCCT	2 cut(s)	476, 917
PciI	ACATGT	1 cut(s)	1386
PcsI	WCGNNNNNNNCGW	2 cut(s)	168, 183
PctI	GAATGC	3 cut(s)	712, 997, 1243
PfeI	GAWTC	5 cut(s)	294, 335, 663, 767, 1292
PflFI	GACNNNGTC	1 cut(s)	185
PkrI	GCNGC	4 cut(s)	166, 331, 1261, 1343
PleI	GAGTC	1 cut(s)	115
PpsI	GAGTC	1 cut(s)	115
Ppu21I	YACGTR	1 cut(s)	1439
PscI	ACATGT	1 cut(s)	1386
PspFI	CCCAGC	1 cut(s)	126
PspN4I	GGNNCC	3 cut(s)	14, 311, 1420
PspPI	GGNCC	1 cut(s)	115
PstI	CTGCAG	1 cut(s)	1346
PsyI	GACNNNGTC	1 cut(s)	185
PvuII	CAGCTG	1 cut(s)	332
RsaI	GTAC	3 cut(s)	311, 1437, 1525
RsaNI	GTAC	3 cut(s)	310, 1436, 1524
RseI	CAYNNNNRTG	2 cut(s)	54, 885
SaqAI	TTAA	4 cut(s)	74, 795, 1149, 1392
SatI	GCNGC	4 cut(s)	165, 330, 1260, 1342
Sau3AI	GATC	1 cut(s)	550
Sau96I	GGNCC	1 cut(s)	115
SchI	GAGTC	1 cut(s)	116
ScrFI	CCNGG	2 cut(s)	416, 884
SduI	GDGCHC	1 cut(s)	1368
SfaNI	GCATC	3 cut(s)	294, 472, 1192
SfcI	CTRYAG	1 cut(s)	1342
SinI	GGWCC	1 cut(s)	115
SmiMI	CAYNNNNRTG	2 cut(s)	54, 885
SmlI	CTYRAG	3 cut(s)	23, 1148, 1265
SmoI	CTYRAG	3 cut(s)	23, 1148, 1265
SphI	GCATGC	1 cut(s)	1022
Sse9I	AATT	5 cut(s)	352, 514, 555, 781, 1547
SseBI	AGGCCT	2 cut(s)	476, 917
SspMI	CTAG	2 cut(s)	843, 1541
StuI	AGGCCT	2 cut(s)	476, 917
StyD4I	CCNGG	2 cut(s)	414, 882
StyI	CCWWGG	3 cut(s)	486, 1047, 1515
TaaI	ACNGT	2 cut(s)	371, 1523
TaiI	ACGT	4 cut(s)	448, 578, 1441, 1626
TaqI	TCGA	6 cut(s)	141, 213, 279, 448, 639, 1410
TasI	AATT	5 cut(s)	352, 514, 555, 781, 1547
TatI	WGTACW	1 cut(s)	1523
TfiI	GAWTC	5 cut(s)	294, 335, 663, 767, 1292
Tru1I	TTAA	4 cut(s)	74, 795, 1149, 1392
Tru9I	TTAA	4 cut(s)	74, 795, 1149, 1392
TscAI	CASTG	1 cut(s)	204
TseFI	GTSAC	4 cut(s)	108, 571, 926, 997
TseI	GCWGC	4 cut(s)	164, 329, 1259, 1341
Tsp45I	GTSAC	4 cut(s)	108, 571, 926, 997
TspDTI	ATGAA	5 cut(s)	966, 983, 1088, 1284, 1373
TspRI	CASTG	1 cut(s)	204
Tth111I	GACNNNGTC	1 cut(s)	185
Vha464I	CTTAAG	1 cut(s)	1148
VpaK11BI	GGWCC	1 cut(s)	115
XapI	RAATTY	2 cut(s)	514, 781
XceI	RCATGY	2 cut(s)	1022, 1390
XspI	CTAG	2 cut(s)	843, 1541
Zsp2I	ATGCAT	2 cut(s)	712, 1020

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.