Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003786.1

Orthogroup ID

OG0006285

Physical Location & Seq

Genomic Coordinates Reverse (-)

102653 .. 103027

Gene Structure 375 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003786.1_g000023.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 375 bp

atgtgtcctgatttgtttacttacagtgttttaataaatgggttgtgtaaggaagggaggttggatgatgcaaatgggttgtttgatgaaatgtgtgtgaagggtttggttctgaatgacgtcatatttaccactttaattgatgggcagtctaagaatgggaatcttgatctggcgctggaaatgtatcggaaaatgttagggagaggtatcaaaccatatatagttacatacaatacactcataaatggcctttgcaaggttggagatatgaaagaagctaggaagcttgttgaggagatgaataccagaggtttcaagccctacaagatcacttatactacacttattgatgaatctacaaaggagagttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

His_Phos_1 PPR PPR_1 PPR_2 PPR_3 p450

Protein Analysis

124

Amino Acids

13.99

Weight (kDa)

5.47

Isoelectric Point (pI)

5.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006285)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22670
fragaria_vesca	FvH4_4g00721
malus_domestica	MD13G1197300.v1.1
prunus_persica	Prupe.1G018400_v2.0.a1
pyrus_communis	pycom13g17020
rosa_chinensis	RchiOBHm_Chr1g0322101 RchiOBHm_Chr4g0386451
rosa_laevigata	RLG00000010131 RLG00000010157 RLG00000010161
rosa_multiflora	Rmu_co8274927.1_g000001 Rmu_sc0001942.1_g000008 Rmu_sc0001942.1_g000027 Rmu_sc0001942.1_g000051 Rmu_sc0002785.1_g000008 Rmu_sc0003786.1_g000023 Rmu_sc0006648.1_g000016 Rmu_sc0036937.1_g000001 Rmu_ssc0000272.1_g000008 Rmu_ssc0000272.1_g000009
rosa_roxburghii	Rroxscaffold_5G00333960 Rroxscaffold_6G00392780
rosa_samantha	Rh1AG049600 Rh4BG009300 Rh4CG014300 Rh4DG010100
rosa_wichuraiana	Rw4G000030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	123
AcyI	GRCGYC	1 cut(s)	120
AfiI	CCNNNNNNNGG	1 cut(s)	259
AgsI	TTSAA	1 cut(s)	319
AluBI	AGCT	2 cut(s)	281, 289
AluI	AGCT	2 cut(s)	281, 289
AoxI	GGCC	1 cut(s)	250
AspLEI	GCGC	1 cut(s)	178
BccI	CCATC	1 cut(s)	137
BfaI	CTAG	1 cut(s)	282
BfoI	RGCGCY	1 cut(s)	179
BmsI	GCATC	1 cut(s)	58
BsaHI	GRCGYC	1 cut(s)	120
Bsc4I	CCNNNNNNNGG	1 cut(s)	259
BseGI	GGATG	1 cut(s)	70
BseLI	CCNNNNNNNGG	1 cut(s)	259
BseRI	GAGGAG	1 cut(s)	311
BshFI	GGCC	1 cut(s)	252
BslI	CCNNNNNNNGG	1 cut(s)	259
BsnI	GGCC	1 cut(s)	252
Bsp143I	GATC	2 cut(s)	169, 330
BspANI	GGCC	1 cut(s)	252
BssMI	GATC	2 cut(s)	169, 330
BssNI	GRCGYC	1 cut(s)	120
Bst4CI	ACNGT	1 cut(s)	26
BstACI	GRCGYC	1 cut(s)	120
BstDEI	CTNAG	1 cut(s)	153
BstENI	CCTNNNNNAGG	1 cut(s)	257
BstF5I	GGATG	1 cut(s)	70
BstH2I	RGCGCY	1 cut(s)	179
BstHHI	GCGC	1 cut(s)	178
BstKTI	GATC	2 cut(s)	172, 333
BstMBI	GATC	2 cut(s)	169, 330
BsuRI	GGCC	1 cut(s)	252
BtsCI	GGATG	1 cut(s)	70
BtsIMutI	CAGTG	1 cut(s)	31
CfoI	GCGC	1 cut(s)	178
CspCI	CAANNNNNGTGG	2 cut(s)	121, 156
CviJI	RGCY	4 cut(s)	252, 281, 289, 322
CviKI_1	RGCY	4 cut(s)	252, 281, 289, 322
DdeI	CTNAG	1 cut(s)	153
DpnI	GATC	2 cut(s)	171, 332
DpnII	GATC	2 cut(s)	169, 330
EcoNI	CCTNNNNNAGG	1 cut(s)	257
FaiI	YATR	8 cut(s)	125, 220, 222, 224, 232, 245, 272, 339
FokI	GGATG	1 cut(s)	77
FspBI	CTAG	1 cut(s)	282
GlaI	GCGC	1 cut(s)	177
HaeII	RGCGCY	1 cut(s)	179
HaeIII	GGCC	1 cut(s)	252
HhaI	GCGC	1 cut(s)	178
Hin1I	GRCGYC	1 cut(s)	120
Hin6I	GCGC	1 cut(s)	176
HinP1I	GCGC	1 cut(s)	176
HindIII	AAGCTT	1 cut(s)	287
HinfI	GANTC	2 cut(s)	163, 356
Hpy166II	GTNNAC	1 cut(s)	18
Hpy188I	TCNGA	2 cut(s)	114, 192
Hpy188III	TCNNGA	2 cut(s)	8, 167
Hpy8I	GTNNAC	1 cut(s)	18
HpyAV	CCTTC	2 cut(s)	47, 94
HpyCH4III	ACNGT	1 cut(s)	26
HpyCH4IV	ACGT	1 cut(s)	120
HpyCH4V	TGCA	2 cut(s)	71, 258
HpyF3I	CTNAG	1 cut(s)	153
HpySE526I	ACGT	1 cut(s)	120
Hsp92I	GRCGYC	1 cut(s)	120
HspAI	GCGC	1 cut(s)	176
Kzo9I	GATC	2 cut(s)	169, 330
LpnPI	CCDG	4 cut(s)	21, 158, 164, 322
LweI	GCATC	1 cut(s)	58
MaeI	CTAG	1 cut(s)	282
MaeII	ACGT	1 cut(s)	120
MaeIII	GTNAC	1 cut(s)	226
MalI	GATC	2 cut(s)	171, 332
MboI	GATC	2 cut(s)	169, 330
MluCI	AATT	1 cut(s)	138
MmeI	TCCRAC	2 cut(s)	42, 244
MnlI	CCTC	4 cut(s)	51, 200, 289, 305
MseI	TTAA	2 cut(s)	32, 137
NdeII	GATC	2 cut(s)	169, 330
PfeI	GAWTC	2 cut(s)	163, 356
SaqAI	TTAA	2 cut(s)	32, 137
Sau3AI	GATC	2 cut(s)	169, 330
SetI	ASST	7 cut(s)	62, 123, 211, 264, 283, 291, 316
SfaNI	GCATC	1 cut(s)	58
Sse9I	AATT	1 cut(s)	138
SspMI	CTAG	1 cut(s)	282
TaaI	ACNGT	1 cut(s)	26
TaiI	ACGT	1 cut(s)	123
TasI	AATT	1 cut(s)	138
TfiI	GAWTC	2 cut(s)	163, 356
Tru1I	TTAA	2 cut(s)	32, 137
Tru9I	TTAA	2 cut(s)	32, 137
TscAI	CASTG	1 cut(s)	31
TspDTI	ATGAA	4 cut(s)	102, 287, 317, 369
TspRI	CASTG	1 cut(s)	31
XagI	CCTNNNNNAGG	1 cut(s)	257
XspI	CTAG	1 cut(s)	282
ZraI	GACGTC	1 cut(s)	121

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.