Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr4

Orthogroup ID

OG0006285

Physical Location & Seq

Genomic Coordinates Forward (+)

138901 .. 140761

Gene Structure 1861 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw4G000030.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1632 bp

ATGCTCACAAGGCTCCACAATCTCAAGCTCCATTCAACTTCAAAAACCCACATCAATGCCCTGCGTTACTTCTTAAACCCTCTATGCACCACAACCGAGGTCGCCGAGTCACCGGACCTCCCCAGCTGGGTCAAGTTCTTCGAGACCAACCACCCAAAACACGCAGCTCCCGACGACGACGACGACTTCGTCATCCCTTCACTGGCCAGTTGGGTCGAAACGCACAACCTAAACCACCCCACCAAACCTCCCAAGCCCTCAACTTCCGATACCGACGACCTCGAAAGCATCAGTAGAATCTTGAAAATCCGGTACCCATCGCCGGAAAATGCAGCTGAAGCGTTGGAAGGGTACGATTTTGAGCTGTCAAACGGTTTGGTGCAACGGGTTTTGATGAGGTTTAGCAATGATTGGGTCCCGGCGTTGGGGTTTTTCACTTGGGCAAAACGTCGAACAGGTTATAGGCATCTTCCTGAGGCCTATAACTCCATGGTTGATGTATTGGGAAAGTCCAAGAATTTTGACCTTATGTGGGATTTTGTTGAGGAAATGGATCAAATTGGAGATGGGTATGTGACGTTGGAGACAATGACGAAGGTGTTTAGGAGACTTGCAAAGGCTGGTAAGCACCGAGAGGCAATCGAGGCGTTTCGGGGCATGGAGCAATTCGGATTGAGCAAAGATGTTGTGGCATTGAACACTCTACTGAATGCATTGGTGAAGGAGAGAAGCGTTGAGCTTGCCCAAGAAGCTTTCTTGGAGTTTAAGGAATCTATACCTGTGAATTCTCACAGCTTTAATGTTTTGATACATGGGTGGTGTAAGAATAGGAAGTTAGACATGGCTAGGAACACAATGGAGGAGATGGAGAGACACGGGTTTCGCCCGGATGTTTTCTCTTATACTTGTTTGGTTGAGGCCTATTGTAGTGACAAGGATTTTCGCAAAGTTGATGAAGTTCTTAGTGAAATGAAGGGCAAGGCTTGCGAGCCGAATGCTGTGACATACACTATTGTAATGCATGCTTTGGGGAAGGCGAGGGAGATAACCAAGGCTTTGGAGGTTTATGAGTTGATGAAAGGGAATGGTGTTGTTCCTGATGTTTCGTTTTACAGCTCTTTGATTTACATTCTTGGTAAAGCCGGCAGGCTTAAGGATGTTCAAGAAGTGGTTGAGGATATGACAAAGCAGGGTGTAAAACCGGACGCTATGACCTATAACACCCTGATTTCTTGTGCTTGCGAGCATTCGCAGGAAGAGGCTGCTCTCAAGTTGCTGAAGAAAATGGAGGAGAATTCATGCAAGCCGGATGTTCAGACATACGCCCCATTGTTGAAGATGTGCTGCAGAAAGAAGAGGATGAAGGTGCTCTACTTTTTGTTAGACCACATGTTTAAGAATGACATTAGTATCGACGCTGGAACCTATGCGCTCTTGGTACGTGGGATGTGCAAGAATGGTAAACCCGAAAACGCTTGCTCCTTCTTTGAGGAGATGGCATTGAAGGGTTTTTTTCCCAAGGACAGTACATACAAGATGTTGCTAGAGGAATTGCAGGGGAAGAATATGGAGAAAGAGAAGAAACATATTGAGAAGTTGATGTTGCAGGCAAAAGAGCAAGGAAACGTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

543

Amino Acids

62.09

Weight (kDa)

6.38

Isoelectric Point (pI)

35.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_long	PF17177	256 - 384	2.6e-11	Pentacotripeptide-repeat region of PRORP
PPR_2	PF13041	262 - 309	5.3e-14	PPR repeat family
PPR	PF01535	265 - 294	8.9e-06	PPR repeat
PPR_3	PF13812	286 - 345	2.7e-13	Pentatricopeptide repeat domain
PPR_2	PF13041	296 - 345	1.2e-14	PPR repeat family
PPR_2	PF13041	334 - 375	1.3e-07	PPR repeat family
PPR	PF01535	334 - 364	7.4e-06	PPR repeat
TPR_24	PF23276	334 - 428	1e-07	Fungal tetratrico peptide repeats
PPR_long	PF17177	346 - 514	2.4e-17	Pentacotripeptide-repeat region of PRORP
PPR_2	PF13041	366 - 414	7.3e-11	PPR repeat family
PPR_3	PF13812	390 - 448	1.4e-13	Pentatricopeptide repeat domain
PPR_1	PF12854	398 - 430	1.6e-07	PPR repeat
PPR_2	PF13041	401 - 450	2.9e-14	PPR repeat family
PPR_1	PF12854	469 - 499	3.1e-06	PPR repeat
PPR_2	PF13041	473 - 517	9.9e-08	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006285)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22670
fragaria_vesca	FvH4_4g00721
malus_domestica	MD13G1197300.v1.1
prunus_persica	Prupe.1G018400_v2.0.a1
pyrus_communis	pycom13g17020
rosa_chinensis	RchiOBHm_Chr1g0322101 RchiOBHm_Chr4g0386451
rosa_laevigata	RLG00000010131 RLG00000010157 RLG00000010161
rosa_multiflora	Rmu_co8274927.1_g000001 Rmu_sc0001942.1_g000008 Rmu_sc0001942.1_g000027 Rmu_sc0001942.1_g000051 Rmu_sc0002785.1_g000008 Rmu_sc0003786.1_g000023 Rmu_sc0006648.1_g000016 Rmu_sc0036937.1_g000001 Rmu_ssc0000272.1_g000008 Rmu_ssc0000272.1_g000009
rosa_roxburghii	Rroxscaffold_5G00333960 Rroxscaffold_6G00392780
rosa_samantha	Rh1AG049600 Rh4BG009300 Rh4CG014300 Rh4DG010100
rosa_wichuraiana	Rw4G000030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	188
Acc65I	GGTACC	1 cut(s)	312
AccB1I	GGYRCC	1 cut(s)	312
AclWI	GGATC	1 cut(s)	561
AcoI	YGGCCR	1 cut(s)	204
AcsI	RAATTY	3 cut(s)	517, 784, 1294
AcuI	CTGAAG	2 cut(s)	357, 1298
AfaI	GTAC	4 cut(s)	314, 353, 1440, 1528
AfiI	CCNNNNNNNGG	6 cut(s)	127, 202, 322, 424, 425, 532
AflII	CTTAAG	1 cut(s)	1151
AflIII	ACRYGT	1 cut(s)	1389
AgsI	TTSAA	7 cut(s)	36, 42, 304, 697, 1163, 1336, 1504
AluBI	AGCT	9 cut(s)	28, 126, 167, 335, 364, 739, 752, 795, 1116
AluI	AGCT	9 cut(s)	28, 126, 167, 335, 364, 739, 752, 795, 1116
Alw21I	GWGCWC	1 cut(s)	1371
Alw26I	GTCTC	4 cut(s)	137, 578, 601, 865
AlwI	GGATC	1 cut(s)	561
AoxI	GGCC	3 cut(s)	204, 477, 918
ApeKI	GCWGC	4 cut(s)	164, 332, 1262, 1344
ApoI	RAATTY	3 cut(s)	517, 784, 1294
ArsI	GACNNNNNNTTYG	4 cut(s)	170, 202, 864, 896
Asp718I	GGTACC	1 cut(s)	312
AspLEI	GCGC	1 cut(s)	1432
AspS9I	GGNCC	2 cut(s)	115, 415
AsuC2I	CCSGG	2 cut(s)	419, 887
AsuHPI	GGTGA	2 cut(s)	102, 730
AvaII	GGWCC	2 cut(s)	115, 415
AxyI	CCTNAGG	1 cut(s)	474
BaeI	ACNNNNGTAYC	4 cut(s)	800, 833, 1393, 1426
BalI	TGGCCA	1 cut(s)	206
BanI	GGYRCC	1 cut(s)	312
BarI	GAAGNNNNNNTAC	2 cut(s)	1355, 1387
Bbv12I	GWGCWC	1 cut(s)	1371
BbvI	GCAGC	4 cut(s)	176, 344, 1249, 1331
BccI	CCATC	4 cut(s)	325, 560, 859, 1489
BcgI	CGANNNNNNTGC	2 cut(s)	977, 1011
BcnI	CCSGG	2 cut(s)	419, 887
BcoDI	GTCTC	4 cut(s)	137, 578, 601, 865
BfaI	CTAG	2 cut(s)	846, 1544
BfmI	CTRYAG	1 cut(s)	1345
BfrI	CTTAAG	1 cut(s)	1151
BisI	GCNGC	4 cut(s)	165, 333, 1263, 1345
BlsI	GCNGC	4 cut(s)	166, 334, 1264, 1346
Bme1390I	CCNGG	2 cut(s)	419, 887
Bme18I	GGWCC	2 cut(s)	115, 415
BmgT120I	GGNCC	2 cut(s)	115, 415
BmiI	GGNNCC	5 cut(s)	14, 314, 416, 417, 1423
BmrFI	CCNGG	2 cut(s)	419, 887
BmsI	GCATC	2 cut(s)	297, 475
BpuEI	CTTGAG	2 cut(s)	8, 1253
BpuMI	CCSGG	2 cut(s)	419, 887
BsaAI	YACGTR	1 cut(s)	1442
BsaI	GGTCTC	1 cut(s)	137
BsaJI	CCNNGG	4 cut(s)	96, 489, 1050, 1518
BsaWI	WCCGGW	3 cut(s)	112, 309, 1201
BsaXI	ACNNNNNCTCC	6 cut(s)	102, 132, 232, 262, 1463, 1493
Bsc4I	CCNNNNNNNGG	6 cut(s)	127, 202, 322, 424, 425, 532
Bse118I	RCCGGY	1 cut(s)	1142
Bse1I	ACTGG	2 cut(s)	207, 207
Bse21I	CCTNAGG	1 cut(s)	474
Bse3DI	GCAATG	1 cut(s)	412
BseDI	CCNNGG	4 cut(s)	96, 489, 1050, 1518
BseGI	GGATG	6 cut(s)	192, 895, 1162, 1315, 1365, 1452
BseLI	CCNNNNNNNGG	6 cut(s)	127, 202, 322, 424, 425, 532
BseMI	GCAATG	1 cut(s)	412
BseMII	CTCAG	1 cut(s)	465
BseNI	ACTGG	2 cut(s)	207, 207
BseRI	GAGGAG	3 cut(s)	875, 1304, 1505
BseXI	GCAGC	4 cut(s)	176, 344, 1249, 1331
BseYI	CCCAGC	2 cut(s)	122, 126
BshFI	GGCC	3 cut(s)	206, 479, 920
BshNI	GGYRCC	1 cut(s)	312
BsiHKAI	GWGCWC	1 cut(s)	1371
BsiSI	CCGG	8 cut(s)	113, 310, 323, 419, 887, 1143, 1202, 1307
BslFI	GGGAC	1 cut(s)	401
BslI	CCNNNNNNNGG	6 cut(s)	127, 202, 322, 424, 425, 532
BsmAI	GTCTC	4 cut(s)	137, 578, 601, 865
BsmFI	GGGAC	1 cut(s)	401
BsmI	GAATGC	3 cut(s)	715, 1000, 1246
BsnI	GGCC	3 cut(s)	206, 479, 920
Bso31I	GGTCTC	1 cut(s)	137
Bsp1286I	GDGCHC	1 cut(s)	1371
Bsp143I	GATC	1 cut(s)	553
Bsp19I	CCATGG	1 cut(s)	489
BspANI	GGCC	3 cut(s)	206, 479, 920
BspCNI	CTCAG	1 cut(s)	466
BspLI	GGNNCC	5 cut(s)	14, 314, 416, 417, 1423
BspMAI	CTGCAG	1 cut(s)	1349
BspPI	GGATC	1 cut(s)	561
BspT107I	GGYRCC	1 cut(s)	312
BspTI	CTTAAG	1 cut(s)	1151
BspTNI	GGTCTC	1 cut(s)	137
BsrDI	GCAATG	1 cut(s)	412
BsrFI	RCCGGY	1 cut(s)	1142
BsrI	ACTGG	2 cut(s)	207, 207
BssAI	RCCGGY	1 cut(s)	1142
BssECI	CCNNGG	4 cut(s)	96, 489, 1050, 1518
BssMI	GATC	1 cut(s)	553
BssT1I	CCWWGG	3 cut(s)	489, 1050, 1518
Bst4CI	ACNGT	2 cut(s)	374, 1526
Bst6I	CTCTTC	2 cut(s)	1251, 1349
BstAFI	CTTAAG	1 cut(s)	1151
BstAPI	GCANNNNNTGC	1 cut(s)	984
BstBAI	YACGTR	1 cut(s)	1442
BstDEI	CTNAG	2 cut(s)	474, 962
BstDSI	CCRYGG	1 cut(s)	489
BstF5I	GGATG	6 cut(s)	192, 895, 1162, 1315, 1365, 1452
BstHHI	GCGC	1 cut(s)	1432
BstKTI	GATC	1 cut(s)	556
BstMAI	GTCTC	4 cut(s)	137, 578, 601, 865
BstMBI	GATC	1 cut(s)	553
BstMWI	GCNNNNNNNGC	5 cut(s)	10, 338, 644, 749, 984
BstNSI	RCATGY	2 cut(s)	1025, 1393
BstSCI	CCNGG	2 cut(s)	417, 885
BstSFI	CTRYAG	1 cut(s)	1345
BstV1I	GCAGC	4 cut(s)	176, 344, 1249, 1331
BstXI	CCANNNNNNTGG	1 cut(s)	1057
Bsu36I	CCTNAGG	1 cut(s)	474
BsuRI	GGCC	3 cut(s)	206, 479, 920
BtgI	CCRYGG	1 cut(s)	489
BtgZI	GCGATG	1 cut(s)	303
BtsCI	GGATG	6 cut(s)	192, 895, 1162, 1315, 1365, 1452
BtsIMutI	CAGTG	1 cut(s)	200
CfoI	GCGC	1 cut(s)	1432
Cfr10I	RCCGGY	1 cut(s)	1142
Cfr13I	GGNCC	2 cut(s)	115, 415
CseI	GACGC	2 cut(s)	1214, 1424
Csp6I	GTAC	4 cut(s)	313, 352, 1439, 1527
CviAII	CATG	7 cut(s)	490, 658, 812, 841, 1022, 1299, 1390
CviQI	GTAC	4 cut(s)	313, 352, 1439, 1527
DdeI	CTNAG	2 cut(s)	474, 962
DpnI	GATC	1 cut(s)	555
DpnII	GATC	1 cut(s)	553
DrdI	GACNNNNNNGTC	1 cut(s)	188
DseDI	GACNNNNNNGTC	1 cut(s)	188
EaeI	YGGCCR	1 cut(s)	204
Eam1104I	CTCTTC	2 cut(s)	1251, 1349
EarI	CTCTTC	2 cut(s)	1251, 1349
Eco130I	CCWWGG	3 cut(s)	489, 1050, 1518
Eco147I	AGGCCT	2 cut(s)	479, 920
Eco31I	GGTCTC	1 cut(s)	137
Eco47I	GGWCC	2 cut(s)	115, 415
Eco57I	CTGAAG	2 cut(s)	357, 1298
Eco81I	CCTNAGG	1 cut(s)	474
EcoO109I	RGGNCCY	1 cut(s)	415
EcoRI	GAATTC	2 cut(s)	784, 1294
EcoT14I	CCWWGG	3 cut(s)	489, 1050, 1518
EcoT22I	ATGCAT	2 cut(s)	715, 1023
ErhI	CCWWGG	3 cut(s)	489, 1050, 1518
FaeI	CATG	7 cut(s)	493, 661, 815, 844, 1025, 1302, 1393
FaqI	GGGAC	1 cut(s)	401
FatI	CATG	7 cut(s)	489, 657, 811, 840, 1021, 1298, 1389
Fnu4HI	GCNGC	4 cut(s)	165, 333, 1263, 1345
FokI	GGATG	6 cut(s)	179, 902, 1169, 1322, 1372, 1459
Fsp4HI	GCNGC	4 cut(s)	165, 333, 1263, 1345
FspBI	CTAG	2 cut(s)	846, 1544
GlaI	GCGC	1 cut(s)	1431
GluI	GCNGC	4 cut(s)	165, 333, 1263, 1345
GsaI	CCCAGC	2 cut(s)	126, 130
HaeIII	GGCC	3 cut(s)	206, 479, 920
HapII	CCGG	8 cut(s)	113, 310, 323, 419, 887, 1143, 1202, 1307
HgaI	GACGC	2 cut(s)	1214, 1424
HhaI	GCGC	1 cut(s)	1432
Hin1II	CATG	7 cut(s)	493, 661, 815, 844, 1025, 1302, 1393
Hin6I	GCGC	1 cut(s)	1430
HinP1I	GCGC	1 cut(s)	1430
HindIII	AAGCTT	1 cut(s)	750
HinfI	GANTC	3 cut(s)	107, 297, 770
HpaII	CCGG	8 cut(s)	113, 310, 323, 419, 887, 1143, 1202, 1307
HphI	GGTGA	2 cut(s)	102, 730
Hpy166II	GTNNAC	1 cut(s)	1463
Hpy188I	TCNGA	3 cut(s)	268, 671, 1317
Hpy188III	TCNNGA	6 cut(s)	142, 170, 301, 473, 1097, 1163
Hpy8I	GTNNAC	1 cut(s)	1463
Hpy99I	CGWCG	7 cut(s)	176, 179, 182, 185, 278, 453, 1418
HpyAV	CCTTC	9 cut(s)	207, 341, 589, 715, 967, 1027, 1357, 1492, 1498
HpyCH4III	ACNGT	2 cut(s)	374, 1526
HpyCH4IV	ACGT	4 cut(s)	448, 578, 1441, 1626
HpyF10VI	GCNNNNNNNGC	5 cut(s)	10, 338, 644, 749, 984
HpyF3I	CTNAG	2 cut(s)	474, 962
HpySE526I	ACGT	4 cut(s)	448, 578, 1441, 1626
Hsp92II	CATG	7 cut(s)	493, 661, 815, 844, 1025, 1302, 1393
HspAI	GCGC	1 cut(s)	1430
KflI	GGGWCCC	1 cut(s)	415
KpnI	GGTACC	1 cut(s)	316
KroI	GCCGGC	1 cut(s)	1142
KroNI	GCCGGC	1 cut(s)	1144
Kzo9I	GATC	1 cut(s)	553
LmnI	GCTCC	5 cut(s)	18, 33, 172, 661, 1484
Lsp1109I	GCAGC	4 cut(s)	176, 344, 1249, 1331
LweI	GCATC	2 cut(s)	297, 475
MaeI	CTAG	2 cut(s)	846, 1544
MaeII	ACGT	4 cut(s)	448, 578, 1441, 1626
MaeIII	GTNAC	5 cut(s)	65, 108, 574, 929, 1000
MalI	GATC	1 cut(s)	555
MboI	GATC	1 cut(s)	553
MboII	GAAGA	8 cut(s)	130, 461, 1268, 1291, 1348, 1366, 1573, 1591
MhlI	GDGCHC	1 cut(s)	1371
MlsI	TGGCCA	1 cut(s)	206
MluCI	AATT	6 cut(s)	517, 558, 665, 784, 1294, 1550
MluNI	TGGCCA	1 cut(s)	206
MlyI	GAGTC	1 cut(s)	116
MmeI	TCCRAC	2 cut(s)	324, 561
Mox20I	TGGCCA	1 cut(s)	206
Mph1103I	ATGCAT	2 cut(s)	715, 1023
MroNI	GCCGGC	1 cut(s)	1142
MscI	TGGCCA	1 cut(s)	206
MseI	TTAA	5 cut(s)	74, 765, 798, 1152, 1395
MslI	CAYNNNNRTG	1 cut(s)	54
Msp20I	TGGCCA	1 cut(s)	206
MspA1I	CMGCKG	2 cut(s)	126, 335
MspCI	CTTAAG	1 cut(s)	1151
MspI	CCGG	8 cut(s)	113, 310, 323, 419, 887, 1143, 1202, 1307
MspR9I	CCNGG	2 cut(s)	419, 887
Mva1269I	GAATGC	3 cut(s)	715, 1000, 1246
MwoI	GCNNNNNNNGC	5 cut(s)	10, 338, 644, 749, 984
NaeI	GCCGGC	1 cut(s)	1144
NciI	CCSGG	2 cut(s)	419, 887
NcoI	CCATGG	1 cut(s)	489
NdeII	GATC	1 cut(s)	553
NgoMIV	GCCGGC	1 cut(s)	1142
NlaIII	CATG	7 cut(s)	493, 661, 815, 844, 1025, 1302, 1393
NlaIV	GGNNCC	5 cut(s)	14, 314, 416, 417, 1423
NmeAIII	GCCGAG	1 cut(s)	130
NmuCI	GTSAC	4 cut(s)	108, 574, 929, 1000
NsiI	ATGCAT	2 cut(s)	715, 1023
NspI	RCATGY	2 cut(s)	1025, 1393
PaeI	GCATGC	1 cut(s)	1025
PceI	AGGCCT	2 cut(s)	479, 920
PciI	ACATGT	1 cut(s)	1389
PcsI	WCGNNNNNNNCGW	3 cut(s)	168, 180, 186
PctI	GAATGC	3 cut(s)	715, 1000, 1246
PdiI	GCCGGC	1 cut(s)	1144
PfeI	GAWTC	2 cut(s)	297, 770
PflFI	GACNNNGTC	1 cut(s)	188
PkrI	GCNGC	4 cut(s)	166, 334, 1264, 1346
PleI	GAGTC	1 cut(s)	115
PpsI	GAGTC	1 cut(s)	115
Ppu21I	YACGTR	1 cut(s)	1442
PpuMI	RGGWCCY	1 cut(s)	415
PscI	ACATGT	1 cut(s)	1389
Psp5II	RGGWCCY	1 cut(s)	415
PspFI	CCCAGC	2 cut(s)	122, 126
PspN4I	GGNNCC	5 cut(s)	14, 314, 416, 417, 1423
PspPI	GGNCC	2 cut(s)	115, 415
PspPPI	RGGWCCY	1 cut(s)	415
PstI	CTGCAG	1 cut(s)	1349
PsyI	GACNNNGTC	1 cut(s)	188
PvuII	CAGCTG	2 cut(s)	126, 335
RsaI	GTAC	4 cut(s)	314, 353, 1440, 1528
RsaNI	GTAC	4 cut(s)	313, 352, 1439, 1527
RseI	CAYNNNNRTG	1 cut(s)	54
SaqAI	TTAA	5 cut(s)	74, 765, 798, 1152, 1395
SatI	GCNGC	4 cut(s)	165, 333, 1263, 1345
Sau3AI	GATC	1 cut(s)	553
Sau96I	GGNCC	2 cut(s)	115, 415
SchI	GAGTC	1 cut(s)	116
ScrFI	CCNGG	2 cut(s)	419, 887
SduI	GDGCHC	1 cut(s)	1371
SfaNI	GCATC	2 cut(s)	297, 475
SfcI	CTRYAG	1 cut(s)	1345
SinI	GGWCC	2 cut(s)	115, 415
SmiMI	CAYNNNNRTG	1 cut(s)	54
SmlI	CTYRAG	3 cut(s)	23, 1151, 1268
SmoI	CTYRAG	3 cut(s)	23, 1151, 1268
SphI	GCATGC	1 cut(s)	1025
Sse9I	AATT	6 cut(s)	517, 558, 665, 784, 1294, 1550
SseBI	AGGCCT	2 cut(s)	479, 920
SspMI	CTAG	2 cut(s)	846, 1544
StuI	AGGCCT	2 cut(s)	479, 920
StyD4I	CCNGG	2 cut(s)	417, 885
StyI	CCWWGG	3 cut(s)	489, 1050, 1518
TaaI	ACNGT	2 cut(s)	374, 1526
TaiI	ACGT	4 cut(s)	451, 581, 1444, 1629
TaqI	TCGA	6 cut(s)	141, 216, 282, 451, 642, 1413
TasI	AATT	6 cut(s)	517, 558, 665, 784, 1294, 1550
TatI	WGTACW	1 cut(s)	1526
TfiI	GAWTC	2 cut(s)	297, 770
Tru1I	TTAA	5 cut(s)	74, 765, 798, 1152, 1395
Tru9I	TTAA	5 cut(s)	74, 765, 798, 1152, 1395
TscAI	CASTG	1 cut(s)	207
TseFI	GTSAC	4 cut(s)	108, 574, 929, 1000
TseI	GCWGC	4 cut(s)	164, 332, 1262, 1344
Tsp45I	GTSAC	4 cut(s)	108, 574, 929, 1000
TspDTI	ATGAA	5 cut(s)	969, 986, 1091, 1287, 1376
TspRI	CASTG	1 cut(s)	207
Tth111I	GACNNNGTC	1 cut(s)	188
Vha464I	CTTAAG	1 cut(s)	1151
VpaK11BI	GGWCC	2 cut(s)	115, 415
XapI	RAATTY	3 cut(s)	517, 784, 1294
XceI	RCATGY	2 cut(s)	1025, 1393
XspI	CTAG	2 cut(s)	846, 1544
Zsp2I	ATGCAT	2 cut(s)	715, 1023

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.