Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0005665

Physical Location & Seq

Genomic Coordinates Forward (+)

9055509 .. 9058020

Gene Structure 2512 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G24800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1233 bp

ATGGCCGAAACTATGAAAGATATTACGATGAAGAACGATGAATCACAGGAAGAAGAAATCCCCGATCAATTTCTCTGCTGCGTTTGCCTGGAACTTCTTTACAAGCCAATTGTGTTATCTTGTGGTCATCTATCATGTTTTTGGTGCGTACATAAGTCCATGAATGGCTTTCGTGAGTCTCATTGTCCGATATGTAGAGACCCGTATGTTCACTTTCCCTCTGTGTGCCAGAAGCTTTATTTTCTGTTAAAGAAGATGTACCCACTTGCTCATAAGAAGAGAGAAGAACAAGTTTTAAAGGAAGAGCAAGAACGAGAATGTTTTTCTCCTCAGATTGATCTTGTTTTGGATTTGTCTGTGTGTAGTGGAGATTCTCTCAATGTCTCTGATAAACAGAAGGTGGAAGAGTGTTCGAATGCAGCGAACTTATTATCTAGTTCATCAAGTAGAGGTGACATTCCATGTATCCCCAAAAATCAAGAACCCACAGATGCAAAAGCTCTTAATGTTCATGAAAATGAATTACTTAAGGATAACAAAGTCAGTAAGCAGATTTCGAAAGATGATTTGCTCTGTTCAGCATGTAAGGAGCTGCTTGTACGACCCGTAGTTCTCAATTGCGGACATGTGTATTGTGAAGGATGTGTAGTAGATATGGCTGAAGAAAGCGAAAAGATCAAATGTCAAGAGTGTAATGTTTGTGACCCAAGAGGATTTCCAAAAGTTTGTTTGATTCTTGAACAGCTTTTGGAGGAAAACTTTCCTGAAGAATACAATTCAAGAAGCAGTAAGGTTCAGAAAACGCTCGCCCATAATAGCAAAGGAAATATTCAAAGCTATCTCAAAGAAGGCCCGTCCTTATCAAACGACAATAACAATGATGATCCCTGGTTGGCAAACCCTGGATCAAATGTTCACTTTGGAGCTGGTTGTGATTCTTGTGGGGTGTATCCAATCATAGGGGATCGATACAGATGCAAAGACTGCAAGGAGGAAATTGGGTATGACCTTTGCAAAGACTGTTACGAGACTCCTTCGAAAGTTCCAGGGAGATTCAACCAGCAACACACTCCTGACCACAGGCTTGAGCTTGCACGGTCTCCTCAGGTTCTGATCAATTTCAATTCTATCGGTATCCTTCTCGGACCCGTTATCTCAAATGAAGGCATGGATACAGATGAAGGCGAGGAAGGGCCTCCTGGTTCTTCTAATGAGTCATCAAGCACAGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009605 GO:0009607 GO:0009620 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043207 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0050832 GO:0050896 GO:0051603 GO:0051704 GO:0051707 GO:0061630 GO:0061659 GO:0070647 GO:0071596 GO:0071704 GO:0098542 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ZZ zf-C3HC4_3 zf-C3HC4_4 zf-RING_UBOX

Protein Analysis

410

Amino Acids

45.94

Weight (kDa)

4.95

Isoelectric Point (pI)

50.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-C3HC4_3	PF13920	23 - 68	2.6e-07	Zinc finger, C3HC4 type (RING finger)
zf-RING_UBOX	PF13445	192 - 228	1.8e-08	RING-type zinc-finger
ZZ	PF00569	306 - 347	1.6e-08	Zinc finger, ZZ type

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005665)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G24800
fragaria_vesca	FvH4_2g19100 FvH4_2g19100 FvH4_2g19100 FvH4_6g51520
malus_domestica	MD10G1165000.v1.1
prunus_persica	Prupe.8G203400_v2.0.a1 Prupe.8G203400_v2.0.a1 Prupe.8G203400_v2.0.a1
pyrus_communis	pycom10g14220
rosa_chinensis	RchiOBHm_Chr6g0284931
rosa_laevigata	RLG00000012700 RLG00000012701
rosa_multiflora	Rmu_sc0004961.1_g000001 Rmu_sc0004961.1_g000002
rosa_roxburghii	Rroxscaffold_7G00183950 Rroxscaffold_7G00183960 Rroxscaffold_7G00184220
rosa_rugosa	Rorug06G0168600 Rorug06G0168700
rosa_samantha	Rh6AG280700 Rh6BG281000 Rh6BG281100 Rh6BG281200 Rh6BG281300 Rh6CG283000 Rh6DG276100
rosa_wichuraiana	Rw6G024120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	621
AclWI	GGATC	3 cut(s)	878, 913, 972
AcoI	YGGCCR	1 cut(s)	3
AcuI	CTGAAG	2 cut(s)	681, 786
AfaI	GTAC	3 cut(s)	150, 260, 600
AfiI	CCNNNNNNNGG	1 cut(s)	959
AflII	CTTAAG	1 cut(s)	527
AflIII	ACRYGT	1 cut(s)	625
AgsI	TTSAA	5 cut(s)	740, 780, 833, 1057, 1123
AjnI	CCWGG	5 cut(s)	87, 887, 901, 1045, 1198
AloI	GAACNNNNNNTCC	2 cut(s)	897, 929
AluBI	AGCT	7 cut(s)	235, 500, 592, 745, 837, 926, 1090
AluI	AGCT	7 cut(s)	235, 500, 592, 745, 837, 926, 1090
Alw26I	GTCTC	5 cut(s)	183, 192, 388, 1022, 1104
AlwI	GGATC	3 cut(s)	878, 913, 972
AlwNI	CAGNNNCTG	1 cut(s)	1111
AoxI	GGCC	3 cut(s)	3, 850, 1193
ApeKI	GCWGC	3 cut(s)	78, 419, 592
Asp700I	GAANNNNTTC	1 cut(s)	759
AspS9I	GGNCC	3 cut(s)	851, 1145, 1193
AsuHPI	GGTGA	1 cut(s)	464
AsuII	TTCGAA	3 cut(s)	413, 557, 1037
AvaII	GGWCC	1 cut(s)	1145
AxyI	CCTNAGG	1 cut(s)	1104
BbvI	GCAGC	3 cut(s)	65, 431, 579
BcgI	CGANNNNNNTGC	2 cut(s)	957, 991
BciT130I	CCWGG	5 cut(s)	89, 889, 903, 1047, 1200
BciVI	GTATCC	4 cut(s)	476, 960, 1145, 1165
BclI	TGATCA	1 cut(s)	1113
BcoDI	GTCTC	5 cut(s)	183, 192, 388, 1022, 1104
BfaI	CTAG	1 cut(s)	435
BfrI	CTTAAG	1 cut(s)	527
BfuI	GTATCC	4 cut(s)	476, 960, 1145, 1165
BisI	GCNGC	3 cut(s)	79, 420, 593
BlsI	GCNGC	3 cut(s)	80, 421, 594
Bme1390I	CCNGG	5 cut(s)	89, 889, 903, 1047, 1200
Bme18I	GGWCC	1 cut(s)	1145
BmgT120I	GGNCC	3 cut(s)	851, 1145, 1193
BmiI	GGNNCC	1 cut(s)	1147
BmrFI	CCNGG	5 cut(s)	89, 889, 903, 1047, 1200
BmsI	GCATC	2 cut(s)	481, 965
BplI	GAGNNNNNCTC	2 cut(s)	360, 392
Bpu14I	TTCGAA	3 cut(s)	413, 557, 1037
BpuEI	CTTGAG	1 cut(s)	1106
Bsa29I	ATCGAT	1 cut(s)	967
BsaI	GGTCTC	2 cut(s)	192, 1104
BsaJI	CCNNGG	3 cut(s)	887, 901, 1046
Bsc4I	CCNNNNNNNGG	1 cut(s)	959
Bse21I	CCTNAGG	1 cut(s)	1104
BseBI	CCWGG	5 cut(s)	89, 889, 903, 1047, 1200
BseCI	ATCGAT	1 cut(s)	967
BseDI	CCNNGG	3 cut(s)	887, 901, 1046
BseGI	GGATG	1 cut(s)	647
BseLI	CCNNNNNNNGG	1 cut(s)	959
BseMII	CTCAG	2 cut(s)	344, 1118
BseRI	GAGGAG	2 cut(s)	318, 1092
BseXI	GCAGC	3 cut(s)	65, 431, 579
BshFI	GGCC	3 cut(s)	5, 852, 1195
BshVI	ATCGAT	1 cut(s)	967
BslI	CCNNNNNNNGG	1 cut(s)	959
BsmAI	GTCTC	5 cut(s)	183, 192, 388, 1022, 1104
BsmI	GAATGC	1 cut(s)	421
BsnI	GGCC	3 cut(s)	5, 852, 1195
Bso31I	GGTCTC	2 cut(s)	192, 1104
Bsp119I	TTCGAA	3 cut(s)	413, 557, 1037
Bsp143I	GATC	7 cut(s)	64, 337, 675, 883, 905, 964, 1113
BspACI	CCGC	1 cut(s)	621
BspANI	GGCC	3 cut(s)	5, 852, 1195
BspCNI	CTCAG	2 cut(s)	343, 1117
BspDI	ATCGAT	1 cut(s)	967
BspHI	TCATGA	1 cut(s)	511
BspLI	GGNNCC	1 cut(s)	1147
BspPI	GGATC	3 cut(s)	878, 913, 972
BspQI	GCTCTTC	1 cut(s)	297
BspT104I	TTCGAA	3 cut(s)	413, 557, 1037
BspTI	CTTAAG	1 cut(s)	527
BspTNI	GGTCTC	2 cut(s)	192, 1104
BssECI	CCNNGG	3 cut(s)	887, 901, 1046
BssMI	GATC	7 cut(s)	64, 337, 675, 883, 905, 964, 1113
Bst2UI	CCWGG	5 cut(s)	89, 889, 903, 1047, 1200
Bst4CI	ACNGT	2 cut(s)	1022, 1098
Bst6I	CTCTTC	3 cut(s)	272, 297, 399
BstAFI	CTTAAG	1 cut(s)	527
BstAPI	GCANNNNNTGC	1 cut(s)	984
BstBI	TTCGAA	3 cut(s)	413, 557, 1037
BstC8I	GCNNGC	2 cut(s)	807, 1092
BstDEI	CTNAG	2 cut(s)	330, 1104
BstF5I	GGATG	1 cut(s)	647
BstKTI	GATC	7 cut(s)	67, 340, 678, 886, 908, 967, 1116
BstMAI	GTCTC	5 cut(s)	183, 192, 388, 1022, 1104
BstMBI	GATC	7 cut(s)	64, 337, 675, 883, 905, 964, 1113
BstMWI	GCNNNNNNNGC	2 cut(s)	84, 984
BstNI	CCWGG	5 cut(s)	89, 889, 903, 1047, 1200
BstNSI	RCATGY	2 cut(s)	585, 629
BstSCI	CCNGG	5 cut(s)	87, 887, 901, 1045, 1198
BstV1I	GCAGC	3 cut(s)	65, 431, 579
Bsu15I	ATCGAT	1 cut(s)	967
Bsu36I	CCTNAGG	1 cut(s)	1104
BsuI	GTATCC	4 cut(s)	476, 960, 1145, 1165
BsuRI	GGCC	3 cut(s)	5, 852, 1195
BsuTUI	ATCGAT	1 cut(s)	967
BtsCI	GGATG	1 cut(s)	647
Cac8I	GCNNGC	2 cut(s)	807, 1092
CaiI	CAGNNNCTG	1 cut(s)	1111
CciI	TCATGA	1 cut(s)	511
Cfr13I	GGNCC	3 cut(s)	851, 1145, 1193
ClaI	ATCGAT	1 cut(s)	967
Csp6I	GTAC	3 cut(s)	149, 259, 599
CviAII	CATG	7 cut(s)	135, 160, 462, 512, 582, 626, 1168
CviQI	GTAC	3 cut(s)	149, 259, 599
DdeI	CTNAG	2 cut(s)	330, 1104
DpnI	GATC	7 cut(s)	66, 339, 677, 885, 907, 966, 1115
DpnII	GATC	7 cut(s)	64, 337, 675, 883, 905, 964, 1113
DraI	TTTAAA	1 cut(s)	297
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	3 cut(s)	272, 297, 399
EarI	CTCTTC	3 cut(s)	272, 297, 399
Eco31I	GGTCTC	2 cut(s)	192, 1104
Eco47I	GGWCC	1 cut(s)	1145
Eco57I	CTGAAG	2 cut(s)	681, 786
Eco81I	CCTNAGG	1 cut(s)	1104
EcoO109I	RGGNCCY	1 cut(s)	1193
EcoRII	CCWGG	5 cut(s)	87, 887, 901, 1045, 1198
FaeI	CATG	7 cut(s)	138, 163, 465, 515, 585, 629, 1171
FatI	CATG	7 cut(s)	134, 159, 461, 511, 581, 625, 1167
FbaI	TGATCA	1 cut(s)	1113
Fnu4HI	GCNGC	3 cut(s)	79, 420, 593
FokI	GGATG	1 cut(s)	654
Fsp4HI	GCNGC	3 cut(s)	79, 420, 593
FspBI	CTAG	1 cut(s)	435
GluI	GCNGC	3 cut(s)	79, 420, 593
HaeIII	GGCC	3 cut(s)	5, 852, 1195
Hin1II	CATG	7 cut(s)	138, 163, 465, 515, 585, 629, 1171
HindIII	AAGCTT	1 cut(s)	233
HinfI	GANTC	8 cut(s)	41, 176, 371, 733, 935, 1030, 1053, 1214
HphI	GGTGA	1 cut(s)	464
Hpy166II	GTNNAC	2 cut(s)	211, 916
Hpy188I	TCNGA	6 cut(s)	189, 333, 388, 798, 1113, 1145
Hpy188III	TCNNGA	8 cut(s)	173, 479, 512, 686, 737, 764, 780, 1073
Hpy8I	GTNNAC	2 cut(s)	211, 916
HpyAV	CCTTC	8 cut(s)	391, 632, 842, 1044, 1148, 1157, 1175, 1184
HpyCH4III	ACNGT	2 cut(s)	1022, 1098
HpyCH4V	TGCA	6 cut(s)	419, 494, 978, 987, 1014, 1094
HpyF10VI	GCNNNNNNNGC	2 cut(s)	84, 984
HpyF3I	CTNAG	2 cut(s)	330, 1104
Hsp92II	CATG	7 cut(s)	138, 163, 465, 515, 585, 629, 1171
Ksp22I	TGATCA	1 cut(s)	1113
Kzo9I	GATC	7 cut(s)	64, 337, 675, 883, 905, 964, 1113
LguI	GCTCTTC	1 cut(s)	297
LmnI	GCTCC	2 cut(s)	589, 923
Lsp1109I	GCAGC	3 cut(s)	65, 431, 579
LweI	GCATC	2 cut(s)	481, 965
MaeI	CTAG	1 cut(s)	435
MaeIII	GTNAC	3 cut(s)	452, 701, 1022
MalI	GATC	7 cut(s)	66, 339, 677, 885, 907, 966, 1115
MboI	GATC	7 cut(s)	64, 337, 675, 883, 905, 964, 1113
MfeI	CAATTG	2 cut(s)	108, 616
MluCI	AATT	8 cut(s)	68, 108, 521, 616, 775, 996, 1117, 1123
MlyI	GAGTC	3 cut(s)	185, 1024, 1223
MnlI	CCTC	9 cut(s)	229, 339, 443, 704, 745, 985, 1113, 1180, 1206
MroXI	GAANNNNTTC	1 cut(s)	759
MseI	TTAA	4 cut(s)	248, 296, 504, 528
MslI	CAYNNNNRTG	1 cut(s)	516
MspCI	CTTAAG	1 cut(s)	527
MspR9I	CCNGG	5 cut(s)	89, 889, 903, 1047, 1200
MunI	CAATTG	2 cut(s)	108, 616
Mva1269I	GAATGC	1 cut(s)	421
MvaI	CCWGG	5 cut(s)	89, 889, 903, 1047, 1200
MwoI	GCNNNNNNNGC	2 cut(s)	84, 984
NdeII	GATC	7 cut(s)	64, 337, 675, 883, 905, 964, 1113
NlaIII	CATG	7 cut(s)	138, 163, 465, 515, 585, 629, 1171
NlaIV	GGNNCC	1 cut(s)	1147
NmuCI	GTSAC	2 cut(s)	452, 701
NspI	RCATGY	2 cut(s)	585, 629
NspV	TTCGAA	3 cut(s)	413, 557, 1037
PagI	TCATGA	1 cut(s)	511
PciI	ACATGT	1 cut(s)	625
PciSI	GCTCTTC	1 cut(s)	297
PcsI	WCGNNNNNNNCGW	1 cut(s)	419
PctI	GAATGC	1 cut(s)	421
PdmI	GAANNNNTTC	1 cut(s)	759
PfeI	GAWTC	5 cut(s)	41, 371, 733, 935, 1053
PkrI	GCNGC	3 cut(s)	80, 421, 594
PleI	GAGTC	3 cut(s)	184, 1024, 1222
PpsI	GAGTC	3 cut(s)	184, 1024, 1222
PscI	ACATGT	1 cut(s)	625
Psp6I	CCWGG	5 cut(s)	87, 887, 901, 1045, 1198
PspGI	CCWGG	5 cut(s)	87, 887, 901, 1045, 1198
PspN4I	GGNNCC	1 cut(s)	1147
PspPI	GGNCC	3 cut(s)	851, 1145, 1193
PstNI	CAGNNNCTG	1 cut(s)	1111
RsaI	GTAC	3 cut(s)	150, 260, 600
RsaNI	GTAC	3 cut(s)	149, 259, 599
RseI	CAYNNNNRTG	1 cut(s)	516
SapI	GCTCTTC	1 cut(s)	297
SaqAI	TTAA	4 cut(s)	248, 296, 504, 528
SatI	GCNGC	3 cut(s)	79, 420, 593
Sau3AI	GATC	7 cut(s)	64, 337, 675, 883, 905, 964, 1113
Sau96I	GGNCC	3 cut(s)	851, 1145, 1193
SchI	GAGTC	3 cut(s)	185, 1024, 1223
ScrFI	CCNGG	5 cut(s)	89, 889, 903, 1047, 1200
SfaNI	GCATC	2 cut(s)	481, 965
SfuI	TTCGAA	3 cut(s)	413, 557, 1037
SinI	GGWCC	1 cut(s)	1145
SmiMI	CAYNNNNRTG	1 cut(s)	516
SmlI	CTYRAG	2 cut(s)	527, 1085
SmoI	CTYRAG	2 cut(s)	527, 1085
Sse9I	AATT	8 cut(s)	68, 108, 521, 616, 775, 996, 1117, 1123
SsiI	CCGC	1 cut(s)	621
SspI	AATATT	1 cut(s)	829
SspMI	CTAG	1 cut(s)	435
StyD4I	CCNGG	5 cut(s)	87, 887, 901, 1045, 1198
TaaI	ACNGT	2 cut(s)	1022, 1098
TaqI	TCGA	4 cut(s)	413, 557, 967, 1037
TasI	AATT	8 cut(s)	68, 108, 521, 616, 775, 996, 1117, 1123
TfiI	GAWTC	5 cut(s)	41, 371, 733, 935, 1053
Tru1I	TTAA	4 cut(s)	248, 296, 504, 528
Tru9I	TTAA	4 cut(s)	248, 296, 504, 528
TseFI	GTSAC	2 cut(s)	452, 701
TseI	GCWGC	3 cut(s)	78, 419, 592
Tsp45I	GTSAC	2 cut(s)	452, 701
Vha464I	CTTAAG	1 cut(s)	527
VpaK11BI	GGWCC	1 cut(s)	1145
XceI	RCATGY	2 cut(s)	585, 629
XmnI	GAANNNNTTC	1 cut(s)	759
XspI	CTAG	1 cut(s)	435

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.