Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0005665

Physical Location & Seq

Genomic Coordinates Forward (+)

23425413 .. 23444373

Gene Structure 18961 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00184220.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1113 bp

ATGGAAAATCATCAAATCTCCGGCGGCGAGGAGGAGGAGGAGGAGTCGGAGGAATGCTCCGACCGCTTCGTCTGCTGCGTGTGTCTGGAACTTCTGTACAAGCCTATAGTGCTCTCCTGTGGGCACGTTTCGTGTTTCTGGTGCGTGCATCGATCCATGAGCGGTGAAAAGCAGTCTCATTGCCCGCTTTGTAGGCATCCCTATAATCACTTTCCGACTATATGTCAATTGCTTCATTGTTTACTGCTCAAGTTGTATCCTGTTGCTTATAAGAAGAGGGGATTGCAAATTCTAGAAGAAGAGGAGAAAACTGGCTACTTCTCACCACAGTTTGATGTTCAGGCTTGGAGCTCACAAGCTAATCAAGACTCGAATATTCTGGGTGATTCGGTAAGCAAAGATTTGAGTGCAAATGTGGAGAAAACAGTTTTCGATTCATATAATCAACACAATGGCATAGCCGTTTCTAGGCCTACTGATGGTGGAGACTATGAGGGAATGGAGAATGTTACTGATCAAGTAAAGAATCCCATGTTATGCCAGCAGCGGAGTGGAAGCCCCAAGCAGATTTCAGTTGCAGATGTGCTATGTGCTGCATGCAAAGAACTGCTGTTTCATCCTGTGGTTCTTAACTGTGGCCATGTGTATTGTGAAAGTTGTATCGTCAGGCAAGATGAAGCGAAGATTAGATGTCAAGTTTGTCAAAGTTTCCATCCAACCAGATATCCAAAAGTTTGTGAGGATCTGCAAAACTTTTTGGTCGAACAGTATCCTAAAGAACTTGCACATAGCAGAGATGGTGTACAGCTTAAGCATGTTAATCCAACTGCATGTGAGAGCAAAAGCAGTAAAGAAGCAGAGAAGTCATCATCGGGTTCATATCACATAGGAGTTGGCTGTGATTATTGTGGGATGTATCCGATAATTGGGGATAGATACCGGTGCAAAGATTGTGTGGAGAAAATTGGATTTGACCTTTGCAATGATTGTTATAATACTAGTTCCAAGCTTCCACGTCGATTTAATCAGCAACATACAGCAGAACACCAGTTTGAGCTTATACGCGGTGACATTATTCGTGGGTCAGTTAAGGTCCTTAAGGATAATAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009605 GO:0009607 GO:0009620 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043207 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0050832 GO:0050896 GO:0051603 GO:0051704 GO:0051707 GO:0061630 GO:0061659 GO:0070647 GO:0071596 GO:0071704 GO:0098542 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ZZ zf-C3HC4_3 zf-C3HC4_4 zf-RING_UBOX

Protein Analysis

370

Amino Acids

41.91

Weight (kDa)

5.9

Isoelectric Point (pI)

50.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-C3HC4_3	PF13920	24 - 69	6.8e-07	Zinc finger, C3HC4 type (RING finger)
zf-C3HC4_2	PF13923	25 - 64	1.9e-06	Zinc finger, C3HC4 type (RING finger)
zf-RING_UBOX	PF13445	197 - 231	6.5e-07	RING-type zinc-finger
ZZ	PF00569	296 - 335	8e-07	Zinc finger, ZZ type

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005665)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G24800
fragaria_vesca	FvH4_2g19100 FvH4_2g19100 FvH4_2g19100 FvH4_6g51520
malus_domestica	MD10G1165000.v1.1
prunus_persica	Prupe.8G203400_v2.0.a1 Prupe.8G203400_v2.0.a1 Prupe.8G203400_v2.0.a1
pyrus_communis	pycom10g14220
rosa_chinensis	RchiOBHm_Chr6g0284931
rosa_laevigata	RLG00000012700 RLG00000012701
rosa_multiflora	Rmu_sc0004961.1_g000001 Rmu_sc0004961.1_g000002
rosa_roxburghii	Rroxscaffold_7G00183950 Rroxscaffold_7G00183960 Rroxscaffold_7G00184220
rosa_rugosa	Rorug06G0168600 Rorug06G0168700
rosa_samantha	Rh6AG280700 Rh6BG281000 Rh6BG281100 Rh6BG281200 Rh6BG281300 Rh6CG283000 Rh6DG276100
rosa_wichuraiana	Rw6G024120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	270, 993
AasI	GACNNNNNNGTC	1 cut(s)	68
AccBSI	CCGCTC	1 cut(s)	162
AccII	CGCG	1 cut(s)	1065
AciI	CCGC	6 cut(s)	24, 64, 162, 185, 547, 1065
AclWI	GGATC	2 cut(s)	147, 750
AcoI	YGGCCR	1 cut(s)	637
AcsI	RAATTY	1 cut(s)	288
AfaI	GTAC	2 cut(s)	98, 804
AfiI	CCNNNNNNNGG	3 cut(s)	468, 479, 926
AflII	CTTAAG	2 cut(s)	809, 1097
AgeI	ACCGGT	1 cut(s)	939
AhdI	GACNNNNNGTC	1 cut(s)	222
AhlI	ACTAGT	1 cut(s)	998
AjiI	CACGTC	1 cut(s)	1016
AluBI	AGCT	5 cut(s)	351, 359, 808, 1009, 1057
AluI	AGCT	5 cut(s)	351, 359, 808, 1009, 1057
Alw21I	GWGCWC	2 cut(s)	114, 353
Alw26I	GTCTC	2 cut(s)	180, 480
AlwI	GGATC	2 cut(s)	147, 750
AoxI	GGCC	2 cut(s)	470, 637
ApeKI	GCWGC	3 cut(s)	75, 544, 593
ApoI	RAATTY	1 cut(s)	288
AsiGI	ACCGGT	1 cut(s)	939
AspS9I	GGNCC	1 cut(s)	1093
AsuHPI	GGTGA	4 cut(s)	176, 315, 395, 1079
AvaII	GGWCC	1 cut(s)	1093
BaeGI	GKGCMC	1 cut(s)	126
BalI	TGGCCA	1 cut(s)	639
BanII	GRGCYC	1 cut(s)	353
Bbv12I	GWGCWC	2 cut(s)	114, 353
BbvI	GCAGC	3 cut(s)	62, 556, 580
BccI	CCATC	3 cut(s)	473, 720, 791
BceAI	ACGGC	1 cut(s)	446
BciVI	GTATCC	3 cut(s)	267, 780, 927
BclI	TGATCA	1 cut(s)	514
BcoDI	GTCTC	2 cut(s)	180, 480
BcuI	ACTAGT	1 cut(s)	998
BfaI	CTAG	3 cut(s)	293, 468, 999
BfmI	CTRYAG	1 cut(s)	105
BfrI	CTTAAG	2 cut(s)	809, 1097
BfuI	GTATCC	3 cut(s)	267, 780, 927
BisI	GCNGC	4 cut(s)	25, 76, 545, 594
BlsI	GCNGC	4 cut(s)	26, 77, 546, 595
Bme18I	GGWCC	1 cut(s)	1093
BmeRI	GACNNNNNGTC	1 cut(s)	222
BmgBI	CACGTC	1 cut(s)	1016
BmgT120I	GGNCC	1 cut(s)	1093
BmsI	GCATC	2 cut(s)	157, 205
BplI	GAGNNNNNCTC	2 cut(s)	41, 73
BpuEI	CTTGAG	1 cut(s)	233
Bsa29I	ATCGAT	1 cut(s)	151
BsaWI	WCCGGW	1 cut(s)	939
BsaXI	ACNNNNNCTCC	2 cut(s)	29, 59
Bsc4I	CCNNNNNNNGG	3 cut(s)	468, 479, 926
Bse118I	RCCGGY	1 cut(s)	939
Bse1I	ACTGG	2 cut(s)	316, 1048
Bse3DI	GCAATG	2 cut(s)	178, 988
BseCI	ATCGAT	1 cut(s)	151
BseGI	GGATG	4 cut(s)	196, 616, 712, 918
BseLI	CCNNNNNNNGG	3 cut(s)	468, 479, 926
BseMI	GCAATG	2 cut(s)	178, 988
BseNI	ACTGG	2 cut(s)	316, 1048
BseRI	GAGGAG	6 cut(s)	44, 47, 50, 53, 56, 317
BseSI	GKGCMC	1 cut(s)	126
BseXI	GCAGC	3 cut(s)	62, 556, 580
Bsh1236I	CGCG	1 cut(s)	1065
Bsh1285I	CGRYCG	1 cut(s)	64
BshFI	GGCC	2 cut(s)	472, 639
BshTI	ACCGGT	1 cut(s)	939
BshVI	ATCGAT	1 cut(s)	151
BsiEI	CGRYCG	1 cut(s)	64
BsiHKAI	GWGCWC	2 cut(s)	114, 353
BsiSI	CCGG	2 cut(s)	21, 940
BslI	CCNNNNNNNGG	3 cut(s)	468, 479, 926
BsmAI	GTCTC	2 cut(s)	180, 480
BsmI	GAATGC	1 cut(s)	59
BsnI	GGCC	2 cut(s)	472, 639
Bsp1286I	GDGCHC	3 cut(s)	114, 126, 353
Bsp1407I	TGTACA	2 cut(s)	96, 802
Bsp143I	GATC	3 cut(s)	152, 514, 742
BspACI	CCGC	6 cut(s)	24, 64, 162, 185, 547, 1065
BspANI	GGCC	2 cut(s)	472, 639
BspDI	ATCGAT	1 cut(s)	151
BspFNI	CGCG	1 cut(s)	1065
BspPI	GGATC	2 cut(s)	147, 750
BspTI	CTTAAG	2 cut(s)	809, 1097
BsrBI	CCGCTC	1 cut(s)	162
BsrDI	GCAATG	2 cut(s)	178, 988
BsrFI	RCCGGY	1 cut(s)	939
BsrGI	TGTACA	2 cut(s)	96, 802
BsrI	ACTGG	2 cut(s)	316, 1048
BssAI	RCCGGY	1 cut(s)	939
BssMI	GATC	3 cut(s)	152, 514, 742
Bst4CI	ACNGT	4 cut(s)	330, 427, 635, 768
Bst6I	CTCTTC	2 cut(s)	269, 294
BstAFI	CTTAAG	2 cut(s)	809, 1097
BstAUI	TGTACA	2 cut(s)	96, 802
BstC8I	GCNNGC	4 cut(s)	146, 185, 542, 598
BstF5I	GGATG	4 cut(s)	196, 616, 712, 918
BstFNI	CGCG	1 cut(s)	1065
BstKTI	GATC	3 cut(s)	155, 517, 745
BstMAI	GTCTC	2 cut(s)	180, 480
BstMBI	GATC	3 cut(s)	152, 514, 742
BstMCI	CGRYCG	1 cut(s)	64
BstMWI	GCNNNNNNNGC	4 cut(s)	63, 72, 109, 193
BstNSI	RCATGY	3 cut(s)	600, 818, 834
BstSFI	CTRYAG	1 cut(s)	105
BstSLI	GKGCMC	1 cut(s)	126
BstUI	CGCG	1 cut(s)	1065
BstV1I	GCAGC	3 cut(s)	62, 556, 580
BstX2I	RGATCY	1 cut(s)	742
BstYI	RGATCY	1 cut(s)	742
Bsu15I	ATCGAT	1 cut(s)	151
BsuI	GTATCC	3 cut(s)	267, 780, 927
BsuRI	GGCC	2 cut(s)	472, 639
BsuTUI	ATCGAT	1 cut(s)	151
BtrI	CACGTC	1 cut(s)	1016
BtsCI	GGATG	4 cut(s)	196, 616, 712, 918
Cac8I	GCNNGC	4 cut(s)	146, 185, 542, 598
Cfr10I	RCCGGY	1 cut(s)	939
Cfr13I	GGNCC	1 cut(s)	1093
ClaI	ATCGAT	1 cut(s)	151
Csp6I	GTAC	2 cut(s)	97, 803
CspAI	ACCGGT	1 cut(s)	939
CviAII	CATG	6 cut(s)	157, 532, 597, 641, 815, 831
CviQI	GTAC	2 cut(s)	97, 803
DpnI	GATC	3 cut(s)	154, 516, 744
DpnII	GATC	3 cut(s)	152, 514, 742
DrdI	GACNNNNNNGTC	1 cut(s)	68
DriI	GACNNNNNGTC	1 cut(s)	222
DseDI	GACNNNNNNGTC	1 cut(s)	68
EaeI	YGGCCR	1 cut(s)	637
Eam1104I	CTCTTC	2 cut(s)	269, 294
Eam1105I	GACNNNNNGTC	1 cut(s)	222
EarI	CTCTTC	2 cut(s)	269, 294
Ecl136II	GAGCTC	1 cut(s)	351
Eco147I	AGGCCT	1 cut(s)	472
Eco24I	GRGCYC	1 cut(s)	353
Eco32I	GATATC	1 cut(s)	725
Eco47I	GGWCC	1 cut(s)	1093
Eco53kI	GAGCTC	1 cut(s)	351
EcoICRI	GAGCTC	1 cut(s)	351
EcoO109I	RGGNCCY	1 cut(s)	1093
EcoRV	GATATC	1 cut(s)	725
EcoT38I	GRGCYC	1 cut(s)	353
FaeI	CATG	6 cut(s)	160, 535, 600, 644, 818, 834
FatI	CATG	6 cut(s)	156, 531, 596, 640, 814, 830
FauI	CCCGC	1 cut(s)	192
FbaI	TGATCA	1 cut(s)	514
Fnu4HI	GCNGC	4 cut(s)	25, 76, 545, 594
FokI	GGATG	4 cut(s)	183, 603, 699, 925
FriOI	GRGCYC	1 cut(s)	353
Fsp4HI	GCNGC	4 cut(s)	25, 76, 545, 594
FspBI	CTAG	3 cut(s)	293, 468, 999
GluI	GCNGC	4 cut(s)	25, 76, 545, 594
HaeIII	GGCC	2 cut(s)	472, 639
HapII	CCGG	2 cut(s)	21, 940
Hin1II	CATG	6 cut(s)	160, 535, 600, 644, 818, 834
HindIII	AAGCTT	1 cut(s)	1007
HinfI	GANTC	5 cut(s)	44, 368, 386, 434, 526
HpaII	CCGG	2 cut(s)	21, 940
HphI	GGTGA	4 cut(s)	176, 315, 395, 1079
Hpy166II	GTNNAC	2 cut(s)	242, 803
Hpy188I	TCNGA	4 cut(s)	49, 61, 216, 921
Hpy188III	TCNNGA	3 cut(s)	86, 293, 365
Hpy8I	GTNNAC	2 cut(s)	242, 803
Hpy99I	CGWCG	1 cut(s)	1020
HpyCH4III	ACNGT	4 cut(s)	330, 427, 635, 768
HpyCH4IV	ACGT	2 cut(s)	126, 1015
HpyF10VI	GCNNNNNNNGC	4 cut(s)	63, 72, 109, 193
HpySE526I	ACGT	2 cut(s)	126, 1015
Hsp92II	CATG	6 cut(s)	160, 535, 600, 644, 818, 834
Ksp22I	TGATCA	1 cut(s)	514
Kzo9I	GATC	3 cut(s)	152, 514, 742
LmnI	GCTCC	2 cut(s)	62, 348
Lsp1109I	GCAGC	3 cut(s)	62, 556, 580
LweI	GCATC	2 cut(s)	157, 205
MaeI	CTAG	3 cut(s)	293, 468, 999
MaeII	ACGT	2 cut(s)	126, 1015
MaeIII	GTNAC	2 cut(s)	508, 1067
MalI	GATC	3 cut(s)	154, 516, 744
MbiI	CCGCTC	1 cut(s)	162
MboI	GATC	3 cut(s)	152, 514, 742
MboII	GAAGA	4 cut(s)	286, 308, 311, 694
MfeI	CAATTG	1 cut(s)	227
MflI	RGATCY	1 cut(s)	742
MhlI	GDGCHC	3 cut(s)	114, 126, 353
MlsI	TGGCCA	1 cut(s)	639
MluCI	AATT	4 cut(s)	227, 288, 924, 963
MluNI	TGGCCA	1 cut(s)	639
MlyI	GAGTC	2 cut(s)	53, 362
MmeI	TCCRAC	5 cut(s)	27, 84, 239, 740, 848
Mox20I	TGGCCA	1 cut(s)	639
MscI	TGGCCA	1 cut(s)	639
MseI	TTAA	6 cut(s)	630, 810, 819, 1023, 1089, 1098
Msp20I	TGGCCA	1 cut(s)	639
MspA1I	CMGCKG	1 cut(s)	547
MspCI	CTTAAG	2 cut(s)	809, 1097
MspI	CCGG	2 cut(s)	21, 940
MunI	CAATTG	1 cut(s)	227
Mva1269I	GAATGC	1 cut(s)	59
MvnI	CGCG	1 cut(s)	1065
MwoI	GCNNNNNNNGC	4 cut(s)	63, 72, 109, 193
NdeII	GATC	3 cut(s)	152, 514, 742
NlaIII	CATG	6 cut(s)	160, 535, 600, 644, 818, 834
NmuCI	GTSAC	1 cut(s)	1067
NspI	RCATGY	3 cut(s)	600, 818, 834
PaeI	GCATGC	1 cut(s)	600
PceI	AGGCCT	1 cut(s)	472
PcsI	WCGNNNNNNNCGW	1 cut(s)	75
PctI	GAATGC	1 cut(s)	59
PfeI	GAWTC	3 cut(s)	386, 434, 526
PinAI	ACCGGT	1 cut(s)	939
PkrI	GCNGC	4 cut(s)	26, 77, 546, 595
PleI	GAGTC	2 cut(s)	52, 362
PpsI	GAGTC	2 cut(s)	52, 362
PpuMI	RGGWCCY	1 cut(s)	1093
PsiI	TTATAA	2 cut(s)	270, 993
Psp124BI	GAGCTC	1 cut(s)	353
Psp5II	RGGWCCY	1 cut(s)	1093
PspPI	GGNCC	1 cut(s)	1093
PspPPI	RGGWCCY	1 cut(s)	1093
PsuI	RGATCY	1 cut(s)	742
RsaI	GTAC	2 cut(s)	98, 804
RsaNI	GTAC	2 cut(s)	97, 803
SacI	GAGCTC	1 cut(s)	353
SaqAI	TTAA	6 cut(s)	630, 810, 819, 1023, 1089, 1098
SatI	GCNGC	4 cut(s)	25, 76, 545, 594
Sau3AI	GATC	3 cut(s)	152, 514, 742
Sau96I	GGNCC	1 cut(s)	1093
SchI	GAGTC	2 cut(s)	53, 362
SduI	GDGCHC	3 cut(s)	114, 126, 353
SetI	ASST	9 cut(s)	129, 353, 361, 810, 978, 1011, 1018, 1059, 1095
SfaNI	GCATC	2 cut(s)	157, 205
SfcI	CTRYAG	1 cut(s)	105
SinI	GGWCC	1 cut(s)	1093
SmlI	CTYRAG	3 cut(s)	248, 809, 1097
SmoI	CTYRAG	3 cut(s)	248, 809, 1097
SpeI	ACTAGT	1 cut(s)	998
SphI	GCATGC	1 cut(s)	600
Sse9I	AATT	4 cut(s)	227, 288, 924, 963
SseBI	AGGCCT	1 cut(s)	472
SsiI	CCGC	6 cut(s)	24, 64, 162, 185, 547, 1065
SspI	AATATT	1 cut(s)	376
SspMI	CTAG	3 cut(s)	293, 468, 999
SstI	GAGCTC	1 cut(s)	353
StuI	AGGCCT	1 cut(s)	472
TaaI	ACNGT	4 cut(s)	330, 427, 635, 768
TaiI	ACGT	2 cut(s)	129, 1018
TaqI	TCGA	5 cut(s)	151, 371, 432, 762, 1018
TasI	AATT	4 cut(s)	227, 288, 924, 963
TatI	WGTACW	2 cut(s)	96, 802
TauI	GCSGC	1 cut(s)	27
TfiI	GAWTC	3 cut(s)	386, 434, 526
Tru1I	TTAA	6 cut(s)	630, 810, 819, 1023, 1089, 1098
Tru9I	TTAA	6 cut(s)	630, 810, 819, 1023, 1089, 1098
TseFI	GTSAC	1 cut(s)	1067
TseI	GCWGC	3 cut(s)	75, 544, 593
Tsp45I	GTSAC	1 cut(s)	1067
TspDTI	ATGAA	5 cut(s)	224, 426, 605, 690, 867
Vha464I	CTTAAG	2 cut(s)	809, 1097
VpaK11BI	GGWCC	1 cut(s)	1093
XapI	RAATTY	1 cut(s)	288
XbaI	TCTAGA	1 cut(s)	292
XceI	RCATGY	3 cut(s)	600, 818, 834
XcmI	CCANNNNNNNNNTGG	1 cut(s)	548
XspI	CTAG	3 cut(s)	293, 468, 999

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.