Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0005665

Physical Location & Seq

Genomic Coordinates Forward (+)

21451544 .. 21454444

Gene Structure 2901 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000012700

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1185 bp

ATGGAAAATCATCACATCTCCGGCTCCGATGAGGAGGAGTCGGAGGAATTCTCCGACCGCTTCGTCTGCTGCATGTGTCTGGAACTTCTGTACAAGCCTATCGTGCTCTCCTGTGGGCACGTTTCGTGTTTCTGGTGCGTGCATCGATCCATGAGCGGTGAAAAGCAATCTCATTGCCCGCTTTGTAGGCATCCCTATAATCACTTTCCGACTATATGTCAATTGCTTCATTGTTTACTGCTCAAGTTGTATCCTGTTGCTTATAAGAAGAGGGAACTGCAAATTCTAGAACAAGAGGAGAAAACTGGCTGCTTCTCACCACAGCTTGATGTTCAGGCTTGGAGCTCACAAGCTAATCAAGACTCAAATATTCTGGGCGACTCTGAAAGCAAAGATTTGAGTGCAAATATGGAGAAAACAGTTTTCGATTCATATAATCAAAACAATGGCATAACGGTTTCTAGGCCTACTGATGGTGGAGGCTATGAGGGAATGGAGAATGTTACTGAGCAAGTAAAGAATCCCCTATTATCTCAGCAGCAGAGCGGAAGTCCCAAGCAGATTTCAGTTGCAGATGTGCTATGTGCTGCTTGCAAAGAACTGCTGTTTTGTCCTGTGGTTCTTAACTGTGGCCATGTATATTGTGAAAGTTGTATCGTCAAACAAAATGAGCAGAAGCTTAGATGTCAAGTTTGTCAAAGTTTCCATCCAACTGGATATCCAAAAGTTTGTTTGGATCTGCAAAACTTTTTGATCGAACAGTTTCCTAAAGAACTTGCACATAGAAGAGATGGTGTACAGCGTAAGCGTGTTAATCCATTTACATGTGAAAGCAAAAGCATTAAAGAAGCAGAGAAGTCATCATCGGGTTCATATCACATAAGAGTTGGCTGTGATTATTGTGGGATGTATCCGATAATTGGGGATAGGTACCGGTGCAAAGATTGTGTGGAGAAAATGGGATTTGACCTTTGCAATGATTGTTATAATACTAGTTCCAAGCTTCCAGGTCGATTTAATCAGCAACATACAGCAGAACACCAGTTTGAGCTTATACGCAGCGACAATATTCGTGAGGAAGATGCCGGGAATAGAGAGCTCCCCCATGCTCCTTCCACCAATAGTGAAAATGATGAGGATGATCAAGATGGCTCTCAACCAAGTTTTCAGCACGGTGGCATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009605 GO:0009607 GO:0009620 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043207 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0050832 GO:0050896 GO:0051603 GO:0051704 GO:0051707 GO:0061630 GO:0061659 GO:0070647 GO:0071596 GO:0071704 GO:0098542 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ZZ zf-C3HC4_3 zf-C3HC4_4 zf-RING_UBOX

Protein Analysis

395

Amino Acids

44.64

Weight (kDa)

5.46

Isoelectric Point (pI)

59.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-C3HC4_3	PF13920	22 - 67	1.8e-06	Zinc finger, C3HC4 type (RING finger)
zf-RING_UBOX	PF13445	195 - 229	7e-06	RING-type zinc-finger
ZZ	PF00569	295 - 333	8e-07	Zinc finger, ZZ type

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005665)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G24800
fragaria_vesca	FvH4_2g19100 FvH4_2g19100 FvH4_2g19100 FvH4_6g51520
malus_domestica	MD10G1165000.v1.1
prunus_persica	Prupe.8G203400_v2.0.a1 Prupe.8G203400_v2.0.a1 Prupe.8G203400_v2.0.a1
pyrus_communis	pycom10g14220
rosa_chinensis	RchiOBHm_Chr6g0284931
rosa_laevigata	RLG00000012700 RLG00000012701
rosa_multiflora	Rmu_sc0004961.1_g000001 Rmu_sc0004961.1_g000002
rosa_roxburghii	Rroxscaffold_7G00183950 Rroxscaffold_7G00183960 Rroxscaffold_7G00184220
rosa_rugosa	Rorug06G0168600 Rorug06G0168700
rosa_samantha	Rh6AG280700 Rh6BG281000 Rh6BG281100 Rh6BG281200 Rh6BG281300 Rh6CG283000 Rh6DG276100
rosa_wichuraiana	Rw6G024120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	264, 987
AasI	GACNNNNNNGTC	1 cut(s)	62
Acc65I	GGTACC	1 cut(s)	930
AccB1I	GGYRCC	1 cut(s)	930
AccBSI	CCGCTC	2 cut(s)	156, 546
AciI	CCGC	4 cut(s)	58, 156, 179, 546
AclWI	GGATC	2 cut(s)	141, 744
AcoI	YGGCCR	1 cut(s)	631
AcsI	RAATTY	2 cut(s)	47, 282
AfaI	GTAC	3 cut(s)	92, 798, 932
AfiI	CCNNNNNNNGG	2 cut(s)	473, 920
AflIII	ACRYGT	1 cut(s)	824
AgeI	ACCGGT	1 cut(s)	933
AhdI	GACNNNNNGTC	1 cut(s)	216
AhlI	ACTAGT	1 cut(s)	992
AjnI	CCWGG	1 cut(s)	1006
AluBI	AGCT	7 cut(s)	325, 345, 353, 679, 1003, 1051, 1099
AluI	AGCT	7 cut(s)	325, 345, 353, 679, 1003, 1051, 1099
Alw21I	GWGCWC	3 cut(s)	108, 347, 1101
AlwI	GGATC	2 cut(s)	141, 744
AoxI	GGCC	2 cut(s)	464, 631
ApeKI	GCWGC	5 cut(s)	69, 309, 538, 587, 1059
ApoI	RAATTY	2 cut(s)	47, 282
AsiGI	ACCGGT	1 cut(s)	933
Asp700I	GAANNNNTTC	1 cut(s)	762
Asp718I	GGTACC	1 cut(s)	930
AsuC2I	CCSGG	1 cut(s)	1087
AsuHPI	GGTGA	2 cut(s)	170, 309
BaeGI	GKGCMC	1 cut(s)	120
BalI	TGGCCA	1 cut(s)	633
BanI	GGYRCC	1 cut(s)	930
BanII	GRGCYC	2 cut(s)	347, 1101
Bbv12I	GWGCWC	3 cut(s)	108, 347, 1101
BbvI	GCAGC	5 cut(s)	56, 296, 550, 574, 1071
BccI	CCATC	4 cut(s)	467, 714, 785, 1142
BciT130I	CCWGG	1 cut(s)	1008
BciVI	GTATCC	2 cut(s)	261, 921
BclI	TGATCA	1 cut(s)	1141
BcnI	CCSGG	1 cut(s)	1087
BcuI	ACTAGT	1 cut(s)	992
BfaI	CTAG	3 cut(s)	287, 462, 993
BfuI	GTATCC	2 cut(s)	261, 921
BisI	GCNGC	5 cut(s)	70, 310, 539, 588, 1060
BlsI	GCNGC	5 cut(s)	71, 311, 540, 589, 1061
Bme1390I	CCNGG	2 cut(s)	1008, 1087
BmeRI	GACNNNNNGTC	1 cut(s)	216
BmiI	GGNNCC	2 cut(s)	25, 932
BmrFI	CCNGG	2 cut(s)	1008, 1087
BmsI	GCATC	3 cut(s)	151, 199, 1072
BplI	GAGNNNNNCTC	2 cut(s)	35, 67
BpuEI	CTTGAG	1 cut(s)	227
BpuMI	CCSGG	1 cut(s)	1087
Bsa29I	ATCGAT	1 cut(s)	145
BsaWI	WCCGGW	1 cut(s)	933
Bsc4I	CCNNNNNNNGG	2 cut(s)	473, 920
Bse118I	RCCGGY	1 cut(s)	933
Bse1I	ACTGG	3 cut(s)	310, 718, 1042
Bse3DI	GCAATG	2 cut(s)	172, 982
BseBI	CCWGG	1 cut(s)	1008
BseCI	ATCGAT	1 cut(s)	145
BseGI	GGATG	4 cut(s)	190, 706, 912, 1144
BseLI	CCNNNNNNNGG	2 cut(s)	473, 920
BseMI	GCAATG	2 cut(s)	172, 982
BseMII	CTCAG	2 cut(s)	498, 548
BseNI	ACTGG	3 cut(s)	310, 718, 1042
BseRI	GAGGAG	3 cut(s)	47, 50, 311
BseSI	GKGCMC	1 cut(s)	120
BseXI	GCAGC	5 cut(s)	56, 296, 550, 574, 1071
Bsh1285I	CGRYCG	1 cut(s)	58
BshFI	GGCC	2 cut(s)	466, 633
BshNI	GGYRCC	1 cut(s)	930
BshTI	ACCGGT	1 cut(s)	933
BshVI	ATCGAT	1 cut(s)	145
BsiEI	CGRYCG	1 cut(s)	58
BsiHKAI	GWGCWC	3 cut(s)	108, 347, 1101
BsiSI	CCGG	3 cut(s)	21, 934, 1086
BslFI	GGGAC	1 cut(s)	537
BslI	CCNNNNNNNGG	2 cut(s)	473, 920
BsmFI	GGGAC	1 cut(s)	537
BsnI	GGCC	2 cut(s)	466, 633
Bsp1286I	GDGCHC	4 cut(s)	108, 120, 347, 1101
Bsp1407I	TGTACA	2 cut(s)	90, 796
Bsp143I	GATC	4 cut(s)	146, 736, 753, 1141
BspACI	CCGC	4 cut(s)	58, 156, 179, 546
BspANI	GGCC	2 cut(s)	466, 633
BspCNI	CTCAG	2 cut(s)	499, 547
BspDI	ATCGAT	1 cut(s)	145
BspLI	GGNNCC	2 cut(s)	25, 932
BspPI	GGATC	2 cut(s)	141, 744
BspT107I	GGYRCC	1 cut(s)	930
BsrBI	CCGCTC	2 cut(s)	156, 546
BsrDI	GCAATG	2 cut(s)	172, 982
BsrFI	RCCGGY	1 cut(s)	933
BsrGI	TGTACA	2 cut(s)	90, 796
BsrI	ACTGG	3 cut(s)	310, 718, 1042
BssAI	RCCGGY	1 cut(s)	933
BssMI	GATC	4 cut(s)	146, 736, 753, 1141
Bst2UI	CCWGG	1 cut(s)	1008
Bst4CI	ACNGT	5 cut(s)	421, 457, 629, 762, 1175
Bst6I	CTCTTC	2 cut(s)	263, 781
BstAUI	TGTACA	2 cut(s)	90, 796
BstC8I	GCNNGC	3 cut(s)	140, 179, 592
BstDEI	CTNAG	3 cut(s)	507, 534, 680
BstF5I	GGATG	4 cut(s)	190, 706, 912, 1144
BstKTI	GATC	4 cut(s)	149, 739, 756, 1144
BstMBI	GATC	4 cut(s)	146, 736, 753, 1141
BstMCI	CGRYCG	1 cut(s)	58
BstMWI	GCNNNNNNNGC	3 cut(s)	66, 103, 187
BstNI	CCWGG	1 cut(s)	1008
BstNSI	RCATGY	2 cut(s)	76, 828
BstSCI	CCNGG	2 cut(s)	1006, 1085
BstSLI	GKGCMC	1 cut(s)	120
BstV1I	GCAGC	5 cut(s)	56, 296, 550, 574, 1071
BstX2I	RGATCY	1 cut(s)	736
BstXI	CCANNNNNNTGG	1 cut(s)	713
BstYI	RGATCY	1 cut(s)	736
Bsu15I	ATCGAT	1 cut(s)	145
BsuI	GTATCC	2 cut(s)	261, 921
BsuRI	GGCC	2 cut(s)	466, 633
BsuTUI	ATCGAT	1 cut(s)	145
BtsCI	GGATG	4 cut(s)	190, 706, 912, 1144
Cac8I	GCNNGC	3 cut(s)	140, 179, 592
Cfr10I	RCCGGY	1 cut(s)	933
ClaI	ATCGAT	1 cut(s)	145
Csp6I	GTAC	3 cut(s)	91, 797, 931
CspAI	ACCGGT	1 cut(s)	933
CviAII	CATG	5 cut(s)	73, 151, 635, 825, 1106
CviQI	GTAC	3 cut(s)	91, 797, 931
DdeI	CTNAG	3 cut(s)	507, 534, 680
DpnI	GATC	4 cut(s)	148, 738, 755, 1143
DpnII	GATC	4 cut(s)	146, 736, 753, 1141
DrdI	GACNNNNNNGTC	1 cut(s)	62
DriI	GACNNNNNGTC	1 cut(s)	216
DseDI	GACNNNNNNGTC	1 cut(s)	62
EaeI	YGGCCR	1 cut(s)	631
Eam1104I	CTCTTC	2 cut(s)	263, 781
Eam1105I	GACNNNNNGTC	1 cut(s)	216
EarI	CTCTTC	2 cut(s)	263, 781
Ecl136II	GAGCTC	2 cut(s)	345, 1099
Eco147I	AGGCCT	1 cut(s)	466
Eco24I	GRGCYC	2 cut(s)	347, 1101
Eco32I	GATATC	1 cut(s)	719
Eco53kI	GAGCTC	2 cut(s)	345, 1099
EcoICRI	GAGCTC	2 cut(s)	345, 1099
EcoRI	GAATTC	1 cut(s)	47
EcoRII	CCWGG	1 cut(s)	1006
EcoRV	GATATC	1 cut(s)	719
EcoT38I	GRGCYC	2 cut(s)	347, 1101
FaeI	CATG	5 cut(s)	76, 154, 638, 828, 1109
FaqI	GGGAC	1 cut(s)	537
FatI	CATG	5 cut(s)	72, 150, 634, 824, 1105
FauI	CCCGC	1 cut(s)	186
FbaI	TGATCA	1 cut(s)	1141
Fnu4HI	GCNGC	5 cut(s)	70, 310, 539, 588, 1060
FokI	GGATG	4 cut(s)	177, 693, 919, 1151
FriOI	GRGCYC	2 cut(s)	347, 1101
Fsp4HI	GCNGC	5 cut(s)	70, 310, 539, 588, 1060
FspBI	CTAG	3 cut(s)	287, 462, 993
GluI	GCNGC	5 cut(s)	70, 310, 539, 588, 1060
HaeIII	GGCC	2 cut(s)	466, 633
HapII	CCGG	3 cut(s)	21, 934, 1086
Hin1II	CATG	5 cut(s)	76, 154, 638, 828, 1109
HindIII	AAGCTT	2 cut(s)	677, 1001
HinfI	GANTC	5 cut(s)	38, 362, 380, 428, 520
HpaII	CCGG	3 cut(s)	21, 934, 1086
HphI	GGTGA	2 cut(s)	170, 309
Hpy166II	GTNNAC	2 cut(s)	236, 797
Hpy188I	TCNGA	6 cut(s)	28, 43, 55, 210, 385, 915
Hpy188III	TCNNGA	5 cut(s)	80, 287, 359, 1073, 1145
Hpy8I	GTNNAC	2 cut(s)	236, 797
HpyAV	CCTTC	1 cut(s)	1122
HpyCH4III	ACNGT	5 cut(s)	421, 457, 629, 762, 1175
HpyCH4IV	ACGT	1 cut(s)	120
HpyF10VI	GCNNNNNNNGC	3 cut(s)	66, 103, 187
HpyF3I	CTNAG	3 cut(s)	507, 534, 680
HpySE526I	ACGT	1 cut(s)	120
Hsp92II	CATG	5 cut(s)	76, 154, 638, 828, 1109
KpnI	GGTACC	1 cut(s)	934
Ksp22I	TGATCA	1 cut(s)	1141
Kzo9I	GATC	4 cut(s)	146, 736, 753, 1141
LmnI	GCTCC	4 cut(s)	29, 342, 1104, 1114
Lsp1109I	GCAGC	5 cut(s)	56, 296, 550, 574, 1071
LweI	GCATC	3 cut(s)	151, 199, 1072
MaeI	CTAG	3 cut(s)	287, 462, 993
MaeII	ACGT	1 cut(s)	120
MaeIII	GTNAC	1 cut(s)	502
MalI	GATC	4 cut(s)	148, 738, 755, 1143
MbiI	CCGCTC	2 cut(s)	156, 546
MboI	GATC	4 cut(s)	146, 736, 753, 1141
MboII	GAAGA	3 cut(s)	280, 798, 1091
MfeI	CAATTG	1 cut(s)	221
MflI	RGATCY	1 cut(s)	736
MhlI	GDGCHC	4 cut(s)	108, 120, 347, 1101
MlsI	TGGCCA	1 cut(s)	633
MluCI	AATT	4 cut(s)	47, 221, 282, 918
MluNI	TGGCCA	1 cut(s)	633
MlyI	GAGTC	3 cut(s)	47, 356, 374
MmeI	TCCRAC	4 cut(s)	21, 78, 233, 734
MnlI	CCTC	9 cut(s)	25, 28, 37, 264, 289, 473, 481, 1069, 1129
Mox20I	TGGCCA	1 cut(s)	633
MroXI	GAANNNNTTC	1 cut(s)	762
MscI	TGGCCA	1 cut(s)	633
MseI	TTAA	4 cut(s)	624, 813, 843, 1017
MslI	CAYNNNNRTG	1 cut(s)	823
Msp20I	TGGCCA	1 cut(s)	633
MspI	CCGG	3 cut(s)	21, 934, 1086
MspR9I	CCNGG	2 cut(s)	1008, 1087
MunI	CAATTG	1 cut(s)	221
MvaI	CCWGG	1 cut(s)	1008
MwoI	GCNNNNNNNGC	3 cut(s)	66, 103, 187
NciI	CCSGG	1 cut(s)	1087
NdeII	GATC	4 cut(s)	146, 736, 753, 1141
NlaIII	CATG	5 cut(s)	76, 154, 638, 828, 1109
NlaIV	GGNNCC	2 cut(s)	25, 932
NspI	RCATGY	2 cut(s)	76, 828
PceI	AGGCCT	1 cut(s)	466
PciI	ACATGT	1 cut(s)	824
PdmI	GAANNNNTTC	1 cut(s)	762
PfeI	GAWTC	2 cut(s)	428, 520
PinAI	ACCGGT	1 cut(s)	933
PkrI	GCNGC	5 cut(s)	71, 311, 540, 589, 1061
PleI	GAGTC	3 cut(s)	46, 356, 374
PpsI	GAGTC	3 cut(s)	46, 356, 374
PscI	ACATGT	1 cut(s)	824
PsiI	TTATAA	2 cut(s)	264, 987
Psp124BI	GAGCTC	2 cut(s)	347, 1101
Psp6I	CCWGG	1 cut(s)	1006
PspGI	CCWGG	1 cut(s)	1006
PspN4I	GGNNCC	2 cut(s)	25, 932
PsuI	RGATCY	1 cut(s)	736
RsaI	GTAC	3 cut(s)	92, 798, 932
RsaNI	GTAC	3 cut(s)	91, 797, 931
RseI	CAYNNNNRTG	1 cut(s)	823
SacI	GAGCTC	2 cut(s)	347, 1101
SaqAI	TTAA	4 cut(s)	624, 813, 843, 1017
SatI	GCNGC	5 cut(s)	70, 310, 539, 588, 1060
Sau3AI	GATC	4 cut(s)	146, 736, 753, 1141
SchI	GAGTC	3 cut(s)	47, 356, 374
ScrFI	CCNGG	2 cut(s)	1008, 1087
SduI	GDGCHC	4 cut(s)	108, 120, 347, 1101
SfaNI	GCATC	3 cut(s)	151, 199, 1072
SmiMI	CAYNNNNRTG	1 cut(s)	823
SmlI	CTYRAG	1 cut(s)	242
SmoI	CTYRAG	1 cut(s)	242
SpeI	ACTAGT	1 cut(s)	992
Sse9I	AATT	4 cut(s)	47, 221, 282, 918
SseBI	AGGCCT	1 cut(s)	466
SsiI	CCGC	4 cut(s)	58, 156, 179, 546
SspI	AATATT	2 cut(s)	370, 1069
SspMI	CTAG	3 cut(s)	287, 462, 993
SstI	GAGCTC	2 cut(s)	347, 1101
StuI	AGGCCT	1 cut(s)	466
StyD4I	CCNGG	2 cut(s)	1006, 1085
TaaI	ACNGT	5 cut(s)	421, 457, 629, 762, 1175
TaiI	ACGT	1 cut(s)	123
TaqI	TCGA	4 cut(s)	145, 426, 756, 1012
TasI	AATT	4 cut(s)	47, 221, 282, 918
TatI	WGTACW	2 cut(s)	90, 796
TfiI	GAWTC	2 cut(s)	428, 520
Tru1I	TTAA	4 cut(s)	624, 813, 843, 1017
Tru9I	TTAA	4 cut(s)	624, 813, 843, 1017
TseI	GCWGC	5 cut(s)	69, 309, 538, 587, 1059
TspDTI	ATGAA	3 cut(s)	218, 420, 861
XapI	RAATTY	2 cut(s)	47, 282
XbaI	TCTAGA	1 cut(s)	286
XceI	RCATGY	2 cut(s)	76, 828
XmnI	GAANNNNTTC	1 cut(s)	762
XspI	CTAG	3 cut(s)	287, 462, 993

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.