Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0005665

Physical Location & Seq

Genomic Coordinates Reverse (-)

38180391 .. 38182644

Gene Structure 2254 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g51520.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 699 bp

ATGGTCAGAATGATGGCTCGGCTGTCTCTAGGCTATGAGGGAAAGGAGAATGTTACTGATCATGTGAAGAACTCCCTGTTAAGTCATCAGCAGAGTGGAAGCTCCCAGCAGATTTCAGTGGCAGATGTGCTATATGCTGCATGCAAAGATCTAGTGTTTCGTCCTGTGGTTCTCAACTGTGGCCATGTATATTGTGAAAGTTGTATCGTCGACCCAGATGAACAGAAGCTTAGATGTCAAGTTTGTCCAAGTTTCCATCCAACTGGATATCCAAAAGTGTGTTTGGATCTGCACAACTTTTTGGTCGAACAGTTTCCCAAAGAACTTGCACGTAGAAGAGATGATGTGAAAGCAAAAGCAAAAGCAGTACAGAAGCAGAGAGGCCATCACCTTGGTCATATCACACAGGAGTTGGCTGCGATTATTGTGGATGATTGTTATAATACCTGTTCCAAGCTTCCGGGTCGATTTAATCAGCAACATACAGCAGAACACCAGTTTGAGCTTATTAGCAGCAACATGTTTCGTGGTCGGGGAAGGATACTGAGTGAGCCGTTAAGTGAATCTATTTCTGTTTTTCTGGCTCACATGTCAGCGATGTCAGTGATTTCAGAGGAAAGTGATAGGAATGGAAAGCTCTCCCATGCTACCTCCACCAATAGTGAAACTGATGAGGATAACCAAGATGACTCTCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009605 GO:0009607 GO:0009620 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043207 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0050832 GO:0050896 GO:0051603 GO:0051704 GO:0051707 GO:0061630 GO:0061659 GO:0070647 GO:0071596 GO:0071704 GO:0098542 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ZZ zf-C3HC4_3 zf-C3HC4_4 zf-RING_UBOX

Protein Analysis

233

Amino Acids

26.03

Weight (kDa)

6.16

Isoelectric Point (pI)

42.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_UBOX	PF13445	48 - 79	2.1e-06	RING-type zinc-finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005665)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G24800
fragaria_vesca	FvH4_2g19100 FvH4_2g19100 FvH4_2g19100 FvH4_6g51520
malus_domestica	MD10G1165000.v1.1
prunus_persica	Prupe.8G203400_v2.0.a1 Prupe.8G203400_v2.0.a1 Prupe.8G203400_v2.0.a1
pyrus_communis	pycom10g14220
rosa_chinensis	RchiOBHm_Chr6g0284931
rosa_laevigata	RLG00000012700 RLG00000012701
rosa_multiflora	Rmu_sc0004961.1_g000001 Rmu_sc0004961.1_g000002
rosa_roxburghii	Rroxscaffold_7G00183950 Rroxscaffold_7G00183960 Rroxscaffold_7G00184220
rosa_rugosa	Rorug06G0168600 Rorug06G0168700
rosa_samantha	Rh6AG280700 Rh6BG281000 Rh6BG281100 Rh6BG281200 Rh6BG281300 Rh6CG283000 Rh6DG276100
rosa_wichuraiana	Rw6G024120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	441
AccI	GTMKAC	1 cut(s)	210
AclWI	GGATC	1 cut(s)	294
AcoI	YGGCCR	1 cut(s)	181
AfaI	GTAC	1 cut(s)	369
AflIII	ACRYGT	2 cut(s)	519, 588
AluBI	AGCT	5 cut(s)	102, 229, 457, 505, 637
AluI	AGCT	5 cut(s)	102, 229, 457, 505, 637
Alw26I	GTCTC	1 cut(s)	30
AlwI	GGATC	1 cut(s)	294
AoxI	GGCC	2 cut(s)	181, 382
ApeKI	GCWGC	3 cut(s)	137, 416, 513
Asp700I	GAANNNNTTC	1 cut(s)	312
AsuC2I	CCSGG	1 cut(s)	462
AsuHPI	GGTGA	1 cut(s)	380
BalI	TGGCCA	1 cut(s)	183
BbvI	GCAGC	3 cut(s)	124, 403, 525
BccI	CCATC	3 cut(s)	7, 264, 393
BceAI	ACGGC	1 cut(s)	538
BciVI	GTATCC	1 cut(s)	534
BclI	TGATCA	1 cut(s)	58
BcnI	CCSGG	1 cut(s)	462
BcoDI	GTCTC	1 cut(s)	30
BfaI	CTAG	2 cut(s)	29, 152
BfuI	GTATCC	1 cut(s)	534
BglII	AGATCT	1 cut(s)	148
BisI	GCNGC	3 cut(s)	138, 417, 514
BlsI	GCNGC	3 cut(s)	139, 418, 515
Bme1390I	CCNGG	1 cut(s)	462
BmrFI	CCNGG	1 cut(s)	462
BpuMI	CCSGG	1 cut(s)	462
BsaAI	YACGTR	1 cut(s)	332
BsaJI	CCNNGG	1 cut(s)	391
Bse1I	ACTGG	2 cut(s)	268, 496
BseDI	CCNNGG	1 cut(s)	391
BseGI	GGATG	2 cut(s)	256, 436
BseMII	CTCAG	1 cut(s)	536
BseNI	ACTGG	2 cut(s)	268, 496
BseXI	GCAGC	3 cut(s)	124, 403, 525
BseYI	CCCAGC	1 cut(s)	105
BsgI	GTGCAG	1 cut(s)	275
BshFI	GGCC	2 cut(s)	183, 384
BsiSI	CCGG	1 cut(s)	461
BsmAI	GTCTC	1 cut(s)	30
BsnI	GGCC	2 cut(s)	183, 384
Bsp143I	GATC	3 cut(s)	58, 148, 286
BspANI	GGCC	2 cut(s)	183, 384
BspCNI	CTCAG	1 cut(s)	537
BspPI	GGATC	1 cut(s)	294
BsrI	ACTGG	2 cut(s)	268, 496
BssECI	CCNNGG	1 cut(s)	391
BssMI	GATC	3 cut(s)	58, 148, 286
BssT1I	CCWWGG	1 cut(s)	391
Bst4CI	ACNGT	2 cut(s)	179, 312
Bst6I	CTCTTC	1 cut(s)	331
BstBAI	YACGTR	1 cut(s)	332
BstC8I	GCNNGC	1 cut(s)	142
BstDEI	CTNAG	2 cut(s)	230, 545
BstF5I	GGATG	2 cut(s)	256, 436
BstKTI	GATC	3 cut(s)	61, 151, 289
BstMAI	GTCTC	1 cut(s)	30
BstMBI	GATC	3 cut(s)	58, 148, 286
BstNSI	RCATGY	3 cut(s)	144, 523, 592
BstSCI	CCNGG	1 cut(s)	460
BstV1I	GCAGC	3 cut(s)	124, 403, 525
BstX2I	RGATCY	2 cut(s)	148, 286
BstXI	CCANNNNNNTGG	2 cut(s)	263, 392
BstYI	RGATCY	2 cut(s)	148, 286
BsuI	GTATCC	1 cut(s)	534
BsuRI	GGCC	2 cut(s)	183, 384
BtgZI	GCGATG	1 cut(s)	611
BtsCI	GGATG	2 cut(s)	256, 436
BtsIMutI	CAGTG	2 cut(s)	123, 609
Cac8I	GCNNGC	1 cut(s)	142
Csp6I	GTAC	1 cut(s)	368
CviAII	CATG	6 cut(s)	62, 141, 185, 520, 589, 644
CviQI	GTAC	1 cut(s)	368
DdeI	CTNAG	2 cut(s)	230, 545
DpnI	GATC	3 cut(s)	60, 150, 288
DpnII	GATC	3 cut(s)	58, 148, 286
EaeI	YGGCCR	1 cut(s)	181
Eam1104I	CTCTTC	1 cut(s)	331
EarI	CTCTTC	1 cut(s)	331
Eco130I	CCWWGG	1 cut(s)	391
Eco32I	GATATC	1 cut(s)	269
EcoRV	GATATC	1 cut(s)	269
EcoT14I	CCWWGG	1 cut(s)	391
ErhI	CCWWGG	1 cut(s)	391
FaeI	CATG	6 cut(s)	65, 144, 188, 523, 592, 647
FatI	CATG	6 cut(s)	61, 140, 184, 519, 588, 643
FbaI	TGATCA	1 cut(s)	58
FblI	GTMKAC	1 cut(s)	210
Fnu4HI	GCNGC	3 cut(s)	138, 417, 514
FokI	GGATG	2 cut(s)	243, 443
Fsp4HI	GCNGC	3 cut(s)	138, 417, 514
FspBI	CTAG	2 cut(s)	29, 152
GluI	GCNGC	3 cut(s)	138, 417, 514
GsaI	CCCAGC	1 cut(s)	109
HaeIII	GGCC	2 cut(s)	183, 384
HapII	CCGG	1 cut(s)	461
Hin1II	CATG	6 cut(s)	65, 144, 188, 523, 592, 647
HincII	GTYRAC	1 cut(s)	211
HindII	GTYRAC	1 cut(s)	211
HindIII	AAGCTT	2 cut(s)	227, 455
HinfI	GANTC	2 cut(s)	563, 689
HpaII	CCGG	1 cut(s)	461
HphI	GGTGA	1 cut(s)	380
Hpy166II	GTNNAC	1 cut(s)	211
Hpy188I	TCNGA	2 cut(s)	8, 613
Hpy8I	GTNNAC	1 cut(s)	211
Hpy99I	CGWCG	1 cut(s)	212
HpyAV	CCTTC	1 cut(s)	531
HpyCH4III	ACNGT	2 cut(s)	179, 312
HpyCH4IV	ACGT	1 cut(s)	331
HpyCH4V	TGCA	4 cut(s)	140, 144, 292, 329
HpyF3I	CTNAG	2 cut(s)	230, 545
HpySE526I	ACGT	1 cut(s)	331
Hsp92II	CATG	6 cut(s)	65, 144, 188, 523, 592, 647
Ksp22I	TGATCA	1 cut(s)	58
Kzo9I	GATC	3 cut(s)	58, 148, 286
LmnI	GCTCC	1 cut(s)	107
Lsp1109I	GCAGC	3 cut(s)	124, 403, 525
MaeI	CTAG	2 cut(s)	29, 152
MaeII	ACGT	1 cut(s)	331
MaeIII	GTNAC	1 cut(s)	52
MalI	GATC	3 cut(s)	60, 150, 288
MboI	GATC	3 cut(s)	58, 148, 286
MboII	GAAGA	2 cut(s)	79, 348
MflI	RGATCY	2 cut(s)	148, 286
MlsI	TGGCCA	1 cut(s)	183
MluNI	TGGCCA	1 cut(s)	183
MlyI	GAGTC	1 cut(s)	683
MmeI	TCCRAC	1 cut(s)	284
MnlI	CCTC	5 cut(s)	31, 374, 607, 661, 667
Mox20I	TGGCCA	1 cut(s)	183
MroXI	GAANNNNTTC	1 cut(s)	312
MscI	TGGCCA	1 cut(s)	183
MseI	TTAA	3 cut(s)	80, 471, 557
Msp20I	TGGCCA	1 cut(s)	183
MspI	CCGG	1 cut(s)	461
MspR9I	CCNGG	1 cut(s)	462
NciI	CCSGG	1 cut(s)	462
NdeII	GATC	3 cut(s)	58, 148, 286
NlaIII	CATG	6 cut(s)	65, 144, 188, 523, 592, 647
NspI	RCATGY	3 cut(s)	144, 523, 592
PaeI	GCATGC	1 cut(s)	144
PciI	ACATGT	2 cut(s)	519, 588
PdmI	GAANNNNTTC	1 cut(s)	312
PfeI	GAWTC	1 cut(s)	563
PkrI	GCNGC	3 cut(s)	139, 418, 515
PleI	GAGTC	1 cut(s)	683
PpsI	GAGTC	1 cut(s)	683
Ppu21I	YACGTR	1 cut(s)	332
PscI	ACATGT	2 cut(s)	519, 588
PsiI	TTATAA	1 cut(s)	441
PspFI	CCCAGC	1 cut(s)	105
PsuI	RGATCY	2 cut(s)	148, 286
RsaI	GTAC	1 cut(s)	369
RsaNI	GTAC	1 cut(s)	368
SalI	GTCGAC	1 cut(s)	209
SaqAI	TTAA	3 cut(s)	80, 471, 557
SatI	GCNGC	3 cut(s)	138, 417, 514
Sau3AI	GATC	3 cut(s)	58, 148, 286
SchI	GAGTC	1 cut(s)	683
ScrFI	CCNGG	1 cut(s)	462
SetI	ASST	9 cut(s)	104, 231, 334, 393, 449, 459, 507, 639, 653
SphI	GCATGC	1 cut(s)	144
SspMI	CTAG	2 cut(s)	29, 152
StyD4I	CCNGG	1 cut(s)	460
StyI	CCWWGG	1 cut(s)	391
TaaI	ACNGT	2 cut(s)	179, 312
TaiI	ACGT	1 cut(s)	334
TaqI	TCGA	3 cut(s)	210, 306, 466
TatI	WGTACW	1 cut(s)	367
TfiI	GAWTC	1 cut(s)	563
Tru1I	TTAA	3 cut(s)	80, 471, 557
Tru9I	TTAA	3 cut(s)	80, 471, 557
TscAI	CASTG	2 cut(s)	123, 609
TseI	GCWGC	3 cut(s)	137, 416, 513
TspDTI	ATGAA	1 cut(s)	234
TspRI	CASTG	2 cut(s)	123, 609
XceI	RCATGY	3 cut(s)	144, 523, 592
XmiI	GTMKAC	1 cut(s)	210
XmnI	GAANNNNTTC	1 cut(s)	312
XspI	CTAG	2 cut(s)	29, 152

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.