Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0005665

Physical Location & Seq

Genomic Coordinates Forward (+)

24887391 .. 24891187

Gene Structure 3797 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0168700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 732 bp

ATGGGAGGGAAGAAATTTGGGGTTCTGCTGTGCGCAGAGGACTCGGACTTTGTGAAGAAGATGTACGGTGGGTATTTTGGGGTGTTTGTGAAAATGCTGGCGGAGGAAGGCGAGACTTGGGACCTGTACCGCGTGGCCTGCGGTGAGTTTCCCGACGACGACGAGGTCGAGAGCTACGACGGGTTTGTTATCTCCGGGAGTAGCAGAGACGCTCATGGGAATGATGCTTGGATCTGCCGACTCTTGACCCTCTTGACCAAACTGGATTCCCTCAAGAAAAAGGTCCTCGGCATTTGCTTCGGCCATCAGATATTAAGTCGTGCACTGGGTGGCAAATCTGGTAGGGCTATCACAGGGTGGGATATCGGAATCCGAACCGTCCACTTGTCATCGTCTTCCAAGATCTTCTCCTCCCTCAAGATTCCAGCTCTTCTCTCCATCTATGAGATCCATCGAGATGAGGTGTGGGAACTTCCACCAAAGGCTGAGCTAATTGCATGGTCGGAAAAGACTGGGGTTGAGATGTTCAAGTATGGTGATCACATCATGGGCATCCAAGGCCACCCTGAATACACCAAAGACATTCTTCTTAACCTCATTGATCGTCTCGTCAAGCTTAACTTCATCTTGGATTCCGAAACTGAGGAGTTGAAGGCAAAGGTGCTTGCTCGTGAACCAGATAGGGAGGCATGGAGAAGGCTGTGCTTAAACTTTCTGAAAGGTGGATTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009605 GO:0009607 GO:0009620 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043207 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0050832 GO:0050896 GO:0051603 GO:0051704 GO:0051707 GO:0061630 GO:0061659 GO:0070647 GO:0071596 GO:0071704 GO:0098542 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ZZ zf-C3HC4_3 zf-C3HC4_4 zf-RING_UBOX

Protein Analysis

243

Amino Acids

27.34

Weight (kDa)

5.92

Isoelectric Point (pI)

31.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GATase	PF00117	55 - 192	1.8e-14	Glutamine amidotransferase class-I
Peptidase_C26	PF07722	84 - 190	3.4e-06	Peptidase C26

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005665)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G24800
fragaria_vesca	FvH4_2g19100 FvH4_2g19100 FvH4_2g19100 FvH4_6g51520
malus_domestica	MD10G1165000.v1.1
prunus_persica	Prupe.8G203400_v2.0.a1 Prupe.8G203400_v2.0.a1 Prupe.8G203400_v2.0.a1
pyrus_communis	pycom10g14220
rosa_chinensis	RchiOBHm_Chr6g0284931
rosa_laevigata	RLG00000012700 RLG00000012701
rosa_multiflora	Rmu_sc0004961.1_g000001 Rmu_sc0004961.1_g000002
rosa_roxburghii	Rroxscaffold_7G00183950 Rroxscaffold_7G00183960 Rroxscaffold_7G00184220
rosa_rugosa	Rorug06G0168600 Rorug06G0168700
rosa_samantha	Rh6AG280700 Rh6BG281000 Rh6BG281100 Rh6BG281200 Rh6BG281300 Rh6CG283000 Rh6DG276100
rosa_wichuraiana	Rw6G024120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	164
Acc16I	TGCGCA	1 cut(s)	34
AccII	CGCG	1 cut(s)	132
AciI	CCGC	3 cut(s)	101, 130, 141
AclWI	GGATC	2 cut(s)	239, 442
AcoI	YGGCCR	1 cut(s)	301
AcsI	RAATTY	1 cut(s)	14
AdeI	CACNNNGTG	2 cut(s)	329, 357
AfaI	GTAC	2 cut(s)	65, 128
AgsI	TTSAA	2 cut(s)	529, 652
AluBI	AGCT	4 cut(s)	174, 428, 490, 616
AluI	AGCT	4 cut(s)	174, 428, 490, 616
Alw21I	GWGCWC	1 cut(s)	325
Alw26I	GTCTC	3 cut(s)	107, 201, 611
Alw44I	GTGCAC	1 cut(s)	321
AlwI	GGATC	2 cut(s)	239, 442
AoxI	GGCC	3 cut(s)	135, 301, 559
ApaLI	GTGCAC	1 cut(s)	321
ApoI	RAATTY	1 cut(s)	14
ArsI	GACNNNNNNTTYG	2 cut(s)	32, 64
AspLEI	GCGC	1 cut(s)	35
AspS9I	GGNCC	2 cut(s)	121, 283
AsuC2I	CCSGG	1 cut(s)	196
AsuHPI	GGTGA	2 cut(s)	155, 548
AvaII	GGWCC	2 cut(s)	121, 283
BaeGI	GKGCMC	1 cut(s)	325
BarI	GAAGNNNNNNTAC	2 cut(s)	47, 79
BauI	CACGAG	1 cut(s)	669
BbsI	GAAGAC	1 cut(s)	387
Bbv12I	GWGCWC	1 cut(s)	325
BccI	CCATC	3 cut(s)	312, 446, 459
BcgI	CGANNNNNNTGC	4 cut(s)	24, 58, 280, 314
BclI	TGATCA	1 cut(s)	538
BcnI	CCSGG	1 cut(s)	196
BcoDI	GTCTC	3 cut(s)	107, 201, 611
BglII	AGATCT	1 cut(s)	402
BlpI	GCTNAGC	1 cut(s)	486
Bme1390I	CCNGG	1 cut(s)	196
Bme18I	GGWCC	2 cut(s)	121, 283
BmgT120I	GGNCC	2 cut(s)	121, 283
BmiI	GGNNCC	1 cut(s)	122
BmrFI	CCNGG	1 cut(s)	196
BmrI	ACTGGG	2 cut(s)	335, 522
BmsI	GCATC	2 cut(s)	214, 561
BmuI	ACTGGG	2 cut(s)	335, 522
BpiI	GAAGAC	1 cut(s)	387
Bpu1102I	GCTNAGC	1 cut(s)	486
BpuEI	CTTGAG	2 cut(s)	257, 401
BpuMI	CCSGG	1 cut(s)	196
BsaJI	CCNNGG	2 cut(s)	286, 556
Bse1I	ACTGG	3 cut(s)	267, 330, 517
BseDI	CCNNGG	2 cut(s)	286, 556
BseGI	GGATG	1 cut(s)	552
BseMII	CTCAG	2 cut(s)	477, 633
BseNI	ACTGG	3 cut(s)	267, 330, 517
BseRI	GAGGAG	2 cut(s)	400, 659
BseSI	GKGCMC	1 cut(s)	325
Bsh1236I	CGCG	1 cut(s)	132
BshFI	GGCC	3 cut(s)	137, 303, 561
BsiHKAI	GWGCWC	1 cut(s)	325
BsiSI	CCGG	1 cut(s)	195
BslFI	GGGAC	1 cut(s)	134
BsmAI	GTCTC	3 cut(s)	107, 201, 611
BsmBI	CGTCTC	2 cut(s)	201, 611
BsmFI	GGGAC	1 cut(s)	134
BsnI	GGCC	3 cut(s)	137, 303, 561
Bsp1286I	GDGCHC	1 cut(s)	325
Bsp143I	GATC	5 cut(s)	231, 402, 447, 538, 601
Bsp1720I	GCTNAGC	1 cut(s)	486
BspACI	CCGC	3 cut(s)	101, 130, 141
BspANI	GGCC	3 cut(s)	137, 303, 561
BspCNI	CTCAG	2 cut(s)	478, 634
BspFNI	CGCG	1 cut(s)	132
BspLI	GGNNCC	1 cut(s)	122
BspPI	GGATC	2 cut(s)	239, 442
BspQI	GCTCTTC	1 cut(s)	435
BsrI	ACTGG	3 cut(s)	267, 330, 517
BssECI	CCNNGG	2 cut(s)	286, 556
BssMI	GATC	5 cut(s)	231, 402, 447, 538, 601
BssSI	CACGAG	1 cut(s)	669
BssT1I	CCWWGG	1 cut(s)	556
Bst2BI	CACGAG	1 cut(s)	669
Bst4CI	ACNGT	2 cut(s)	68, 379
Bst6I	CTCTTC	1 cut(s)	435
BstC8I	GCNNGC	3 cut(s)	99, 139, 666
BstDEI	CTNAG	2 cut(s)	486, 642
BstF5I	GGATG	1 cut(s)	552
BstFNI	CGCG	1 cut(s)	132
BstHHI	GCGC	1 cut(s)	35
BstKTI	GATC	5 cut(s)	234, 405, 450, 541, 604
BstMAI	GTCTC	3 cut(s)	107, 201, 611
BstMBI	GATC	5 cut(s)	231, 402, 447, 538, 601
BstMWI	GCNNNNNNNGC	2 cut(s)	138, 558
BstSCI	CCNGG	1 cut(s)	194
BstSLI	GKGCMC	1 cut(s)	325
BstUI	CGCG	1 cut(s)	132
BstV2I	GAAGAC	1 cut(s)	387
BstX2I	RGATCY	3 cut(s)	231, 402, 447
BstYI	RGATCY	3 cut(s)	231, 402, 447
BsuRI	GGCC	3 cut(s)	137, 303, 561
BtsCI	GGATG	1 cut(s)	552
BtsIMutI	CAGTG	1 cut(s)	323
Cac8I	GCNNGC	3 cut(s)	99, 139, 666
CfoI	GCGC	1 cut(s)	35
Cfr13I	GGNCC	2 cut(s)	121, 283
CseI	GACGC	1 cut(s)	218
Csp6I	GTAC	2 cut(s)	64, 127
CviAII	CATG	4 cut(s)	215, 498, 547, 690
CviQI	GTAC	2 cut(s)	64, 127
DdeI	CTNAG	2 cut(s)	486, 642
DpnI	GATC	5 cut(s)	233, 404, 449, 540, 603
DpnII	GATC	5 cut(s)	231, 402, 447, 538, 601
DraIII	CACNNNGTG	2 cut(s)	329, 357
DrdI	GACNNNNNNGTC	1 cut(s)	164
DseDI	GACNNNNNNGTC	1 cut(s)	164
EaeI	YGGCCR	1 cut(s)	301
Eam1104I	CTCTTC	1 cut(s)	435
EarI	CTCTTC	1 cut(s)	435
EciI	GGCGGA	1 cut(s)	116
Eco130I	CCWWGG	1 cut(s)	556
Eco32I	GATATC	1 cut(s)	364
Eco47I	GGWCC	2 cut(s)	121, 283
EcoO109I	RGGNCCY	2 cut(s)	121, 283
EcoRV	GATATC	1 cut(s)	364
EcoT14I	CCWWGG	1 cut(s)	556
ErhI	CCWWGG	1 cut(s)	556
Esp3I	CGTCTC	2 cut(s)	201, 611
FaeI	CATG	4 cut(s)	218, 501, 550, 693
FaiI	YATR	7 cut(s)	216, 444, 499, 534, 548, 691, 730
FalI	AAGNNNNNCTT	4 cut(s)	570, 602, 605, 637
FaqI	GGGAC	1 cut(s)	134
FatI	CATG	4 cut(s)	214, 497, 546, 689
FbaI	TGATCA	1 cut(s)	538
FokI	GGATG	1 cut(s)	539
FspI	TGCGCA	1 cut(s)	34
GlaI	GCGC	1 cut(s)	34
HaeIII	GGCC	3 cut(s)	137, 303, 561
HapII	CCGG	1 cut(s)	195
HgaI	GACGC	1 cut(s)	218
HhaI	GCGC	1 cut(s)	35
Hin1II	CATG	4 cut(s)	218, 501, 550, 693
Hin6I	GCGC	1 cut(s)	33
HinP1I	GCGC	1 cut(s)	33
HindIII	AAGCTT	1 cut(s)	614
HinfI	GANTC	6 cut(s)	41, 240, 266, 369, 421, 632
HpaII	CCGG	1 cut(s)	195
HphI	GGTGA	2 cut(s)	155, 548
Hpy166II	GTNNAC	3 cut(s)	323, 382, 674
Hpy188I	TCNGA	7 cut(s)	46, 309, 368, 374, 505, 637, 717
Hpy188III	TCNNGA	8 cut(s)	152, 169, 244, 253, 274, 418, 455, 671
Hpy8I	GTNNAC	3 cut(s)	323, 382, 674
Hpy99I	CGWCG	4 cut(s)	158, 161, 164, 182
HpyAV	CCTTC	3 cut(s)	101, 646, 690
HpyCH4III	ACNGT	2 cut(s)	68, 379
HpyCH4V	TGCA	2 cut(s)	323, 497
HpyF10VI	GCNNNNNNNGC	2 cut(s)	138, 558
HpyF3I	CTNAG	2 cut(s)	486, 642
Hsp92II	CATG	4 cut(s)	218, 501, 550, 693
HspAI	GCGC	1 cut(s)	33
Ksp22I	TGATCA	1 cut(s)	538
Kzo9I	GATC	5 cut(s)	231, 402, 447, 538, 601
LguI	GCTCTTC	1 cut(s)	435
LweI	GCATC	2 cut(s)	214, 561
MalI	GATC	5 cut(s)	233, 404, 449, 540, 603
MboI	GATC	5 cut(s)	231, 402, 447, 538, 601
MboII	GAAGA	7 cut(s)	22, 67, 70, 387, 397, 422, 578
MflI	RGATCY	3 cut(s)	231, 402, 447
MhlI	GDGCHC	1 cut(s)	325
MluCI	AATT	2 cut(s)	14, 492
MlyI	GAGTC	2 cut(s)	35, 234
MmeI	TCCRAC	1 cut(s)	483
MseI	TTAA	4 cut(s)	314, 591, 618, 707
MslI	CAYNNNNRTG	2 cut(s)	219, 456
MspI	CCGG	1 cut(s)	195
MspR9I	CCNGG	1 cut(s)	196
MvnI	CGCG	1 cut(s)	132
MwoI	GCNNNNNNNGC	2 cut(s)	138, 558
NciI	CCSGG	1 cut(s)	196
NdeII	GATC	5 cut(s)	231, 402, 447, 538, 601
NlaIII	CATG	4 cut(s)	218, 501, 550, 693
NlaIV	GGNNCC	1 cut(s)	122
NmeAIII	GCCGAG	1 cut(s)	267
NsbI	TGCGCA	1 cut(s)	34
PciSI	GCTCTTC	1 cut(s)	435
PcsI	WCGNNNNNNNCGW	2 cut(s)	165, 174
PfeI	GAWTC	4 cut(s)	266, 369, 421, 632
PflFI	GACNNNGTC	1 cut(s)	164
PfoI	TCCNGGA	1 cut(s)	194
PleI	GAGTC	2 cut(s)	35, 234
PpsI	GAGTC	2 cut(s)	35, 234
PpuMI	RGGWCCY	2 cut(s)	121, 283
Psp5II	RGGWCCY	2 cut(s)	121, 283
PspN4I	GGNNCC	1 cut(s)	122
PspPI	GGNCC	2 cut(s)	121, 283
PspPPI	RGGWCCY	2 cut(s)	121, 283
PsuI	RGATCY	3 cut(s)	231, 402, 447
PsyI	GACNNNGTC	1 cut(s)	164
RsaI	GTAC	2 cut(s)	65, 128
RsaNI	GTAC	2 cut(s)	64, 127
RseI	CAYNNNNRTG	2 cut(s)	219, 456
SapI	GCTCTTC	1 cut(s)	435
SaqAI	TTAA	4 cut(s)	314, 591, 618, 707
Sau3AI	GATC	5 cut(s)	231, 402, 447, 538, 601
Sau96I	GGNCC	2 cut(s)	121, 283
SchI	GAGTC	2 cut(s)	35, 234
ScrFI	CCNGG	1 cut(s)	196
SduI	GDGCHC	1 cut(s)	325
SfaNI	GCATC	2 cut(s)	214, 561
SinI	GGWCC	2 cut(s)	121, 283
SmiMI	CAYNNNNRTG	2 cut(s)	219, 456
SmlI	CTYRAG	2 cut(s)	272, 416
SmoI	CTYRAG	2 cut(s)	272, 416
Sse9I	AATT	2 cut(s)	14, 492
SsiI	CCGC	3 cut(s)	101, 130, 141
StyD4I	CCNGG	1 cut(s)	194
StyI	CCWWGG	1 cut(s)	556
TaaI	ACNGT	2 cut(s)	68, 379
TaqI	TCGA	2 cut(s)	168, 454
TasI	AATT	2 cut(s)	14, 492
TfiI	GAWTC	4 cut(s)	266, 369, 421, 632
Tru1I	TTAA	4 cut(s)	314, 591, 618, 707
Tru9I	TTAA	4 cut(s)	314, 591, 618, 707
TscAI	CASTG	1 cut(s)	330
TspDTI	ATGAA	1 cut(s)	613
TspRI	CASTG	1 cut(s)	330
Tth111I	GACNNNGTC	1 cut(s)	164
VneI	GTGCAC	1 cut(s)	321
VpaK11BI	GGWCC	2 cut(s)	121, 283
XapI	RAATTY	1 cut(s)	14

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.