Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0005665

Physical Location & Seq

Genomic Coordinates Reverse (-)

19124862 .. 19128400

Gene Structure 3539 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G203400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1203 bp

ATGAACGACAATCAAATTTCACTAGGTGATGAACAGGAGGAAATCCCCGATTCCTTCATCTGCTGCGTTTGTTTGGATCTTCTTTACAAGCCTATAGTGCTCTCTTGTGGTCACGTTTCGTGTTTCTGGTGTGTGCACAGATCGATGAGCAGTCTAGGCCAATCTCAATGTCCGCTTTGTAGGCATGAGTATAATCATTTTCCAACCATCTGTCAAATGCTTCATTTTTTGCTACTCAAGAAGTACCCTGTTGCCTATAAGAGAAGGGAATTGCAAATTCTTGAGGAAGAGAAGAGAAGCGGCTGCTTCTCGCCGCAGTTAGATGCACATGGATGCAACTCACAAGCTAGTCAAGACTTACATATTCAGAATAATGGCACAGCTGGTCCTAAGCAAACCCGTGGTGGAGATTATGAGGGAACTGGGAATGTTACTGATGAAGAAAAGAATTCCCTGTTAAACACGGATAGCGGGAGTGCCGACCGGATTTCAGTTGCTGATGTGATATGTGCCGCATGCAAGCAACTGTCGTTTCATCCTGTGGTTCTTAACTGTGGCCACGTATATTGTGAAAGTTGCATTGTTAAACCAGATGAACAGATGCTTAGATGTAACGTTTGTCAAAGTTCTCATCCATCAGGATTTCCAAAAGTTTGTTTGGTGCTTGGACACTTTCTGGAGGAGCAATTTCCAAAAGAATACGCACTTAGAAGAGCTGCTGTACAGCTTAAACAAGCTGATTCCAAGCATGAGAACCCAAATGCCTGTGCAACAAAAGCTGATACGCAAAGAAAGAAGTTATCACCATGGTCTGACCCAGTTCACATAAGATTTGGTTGTGATTCTTGTGGGATGTTTCCCATCCTTGGGGATAGATACAATTGCTTAGATTGTTTCGAGAAAAAAGGATTCGACCTTTGCAGCCATTGTTATAACACCAATTCTAAGCTTCCAGGTCGATTTAATCAGCAGCATACACCGGAACATAGGTTTAAGCTTGTACGCAAGGACTCGATTCGTAATCAGTTAAAGCTAGTGATCGGAGACATAGATGATATTTCTCTTGCTCTCATTATCGCTAGTATTAGTTCAGAAGGAACCATTTCTCCTGATGCTCAGGAAAATGCCGAGAATAGATCAGCTGTCCATGCTCCCTCCACTAGTAGTGGAGACGAACAAGATGAGTCTTTAACCTCAGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009605 GO:0009607 GO:0009620 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043207 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0050832 GO:0050896 GO:0051603 GO:0051704 GO:0051707 GO:0061630 GO:0061659 GO:0070647 GO:0071596 GO:0071704 GO:0098542 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ZZ zf-C3HC4_3 zf-C3HC4_4 zf-RING_UBOX

Protein Analysis

401

Amino Acids

44.58

Weight (kDa)

5.85

Isoelectric Point (pI)

50.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005665)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G24800
fragaria_vesca	FvH4_2g19100 FvH4_2g19100 FvH4_2g19100 FvH4_6g51520
malus_domestica	MD10G1165000.v1.1
prunus_persica	Prupe.8G203400_v2.0.a1 Prupe.8G203400_v2.0.a1 Prupe.8G203400_v2.0.a1
pyrus_communis	pycom10g14220
rosa_chinensis	RchiOBHm_Chr6g0284931
rosa_laevigata	RLG00000012700 RLG00000012701
rosa_multiflora	Rmu_sc0004961.1_g000001 Rmu_sc0004961.1_g000002
rosa_roxburghii	Rroxscaffold_7G00183950 Rroxscaffold_7G00183960 Rroxscaffold_7G00184220
rosa_rugosa	Rorug06G0168600 Rorug06G0168700
rosa_samantha	Rh6AG280700 Rh6BG281000 Rh6BG281100 Rh6BG281200 Rh6BG281300 Rh6CG283000 Rh6DG276100
rosa_wichuraiana	Rw6G024120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	933
AciI	CCGC	5 cut(s)	173, 300, 314, 471, 513
AclI	AACGTT	1 cut(s)	615
AclWI	GGATC	1 cut(s)	84
AcoI	YGGCCR	1 cut(s)	556
AcsI	RAATTY	3 cut(s)	15, 276, 448
AdeI	CACNNNGTG	1 cut(s)	26
AfaI	GTAC	3 cut(s)	245, 723, 1002
AfiI	CCNNNNNNNGG	2 cut(s)	866, 867
AhlI	ACTAGT	1 cut(s)	1160
AjnI	CCWGG	1 cut(s)	952
AloI	GAACNNNNNNTCC	2 cut(s)	1090, 1122
Alw21I	GWGCWC	2 cut(s)	102, 138
Alw26I	GTCTC	2 cut(s)	1038, 1164
Alw44I	GTGCAC	1 cut(s)	134
AlwI	GGATC	1 cut(s)	84
AlwNI	CAGNNNCTG	1 cut(s)	497
AoxI	GGCC	2 cut(s)	157, 556
ApaLI	GTGCAC	1 cut(s)	134
ApeKI	GCWGC	5 cut(s)	63, 303, 716, 921, 970
ApoI	RAATTY	3 cut(s)	15, 276, 448
Asp700I	GAANNNNTTC	1 cut(s)	1102
AspS9I	GGNCC	1 cut(s)	386
AsuHPI	GGTGA	2 cut(s)	38, 795
AvaII	GGWCC	1 cut(s)	386
BaeGI	GKGCMC	1 cut(s)	138
BalI	TGGCCA	1 cut(s)	558
Bbv12I	GWGCWC	2 cut(s)	102, 138
BbvI	GCAGC	5 cut(s)	50, 290, 703, 933, 982
BccI	CCATC	3 cut(s)	215, 643, 869
BciT130I	CCWGG	1 cut(s)	954
BcoDI	GTCTC	2 cut(s)	1038, 1164
BcuI	ACTAGT	1 cut(s)	1160
BfaI	CTAG	6 cut(s)	23, 155, 348, 1034, 1080, 1161
BfmI	CTRYAG	1 cut(s)	93
BisI	GCNGC	8 cut(s)	64, 301, 304, 314, 513, 717, 922, 971
BlsI	GCNGC	8 cut(s)	65, 302, 305, 315, 514, 718, 923, 972
Bme1390I	CCNGG	1 cut(s)	954
Bme18I	GGWCC	1 cut(s)	386
BmgT120I	GGNCC	1 cut(s)	386
BmiI	GGNNCC	1 cut(s)	1099
BmrFI	CCNGG	1 cut(s)	954
BmrI	ACTGGG	2 cut(s)	432, 812
BmsI	GCATC	4 cut(s)	313, 323, 591, 1102
BmuI	ACTGGG	2 cut(s)	432, 812
BpmI	CTGGAG	1 cut(s)	698
Bpu10I	CCTNAGC	2 cut(s)	390, 1116
BpuEI	CTTGAG	2 cut(s)	221, 302
Bsa29I	ATCGAT	1 cut(s)	143
BsaAI	YACGTR	1 cut(s)	562
BsaJI	CCNNGG	3 cut(s)	400, 806, 865
BsaWI	WCCGGW	2 cut(s)	483, 979
BsaXI	ACNNNNNCTCC	2 cut(s)	1090, 1120
Bsc4I	CCNNNNNNNGG	2 cut(s)	866, 867
Bse1I	ACTGG	2 cut(s)	427, 818
BseBI	CCWGG	1 cut(s)	954
BseCI	ATCGAT	1 cut(s)	143
BseDI	CCNNGG	3 cut(s)	400, 806, 865
BseGI	GGATG	5 cut(s)	338, 535, 631, 858, 861
BseLI	CCNNNNNNNGG	2 cut(s)	866, 867
BseMII	CTCAG	1 cut(s)	1130
BseNI	ACTGG	2 cut(s)	427, 818
BseRI	GAGGAG	1 cut(s)	695
BseSI	GKGCMC	1 cut(s)	138
BseXI	GCAGC	5 cut(s)	50, 290, 703, 933, 982
Bsh1285I	CGRYCG	1 cut(s)	484
BshFI	GGCC	2 cut(s)	159, 558
BshVI	ATCGAT	1 cut(s)	143
BsiEI	CGRYCG	1 cut(s)	484
BsiHKAI	GWGCWC	2 cut(s)	102, 138
BsiSI	CCGG	2 cut(s)	484, 980
BslI	CCNNNNNNNGG	2 cut(s)	866, 867
BsmAI	GTCTC	2 cut(s)	1038, 1164
BsmBI	CGTCTC	1 cut(s)	1164
BsnI	GGCC	2 cut(s)	159, 558
Bsp1286I	GDGCHC	2 cut(s)	102, 138
Bsp1407I	TGTACA	1 cut(s)	721
Bsp143I	GATC	4 cut(s)	76, 140, 1038, 1136
Bsp19I	CCATGG	1 cut(s)	806
BspACI	CCGC	5 cut(s)	173, 300, 314, 471, 513
BspANI	GGCC	2 cut(s)	159, 558
BspCNI	CTCAG	1 cut(s)	1129
BspDI	ATCGAT	1 cut(s)	143
BspLI	GGNNCC	1 cut(s)	1099
BspPI	GGATC	1 cut(s)	84
BspQI	GCTCTTC	1 cut(s)	706
BsrGI	TGTACA	1 cut(s)	721
BsrI	ACTGG	2 cut(s)	427, 818
BssECI	CCNNGG	3 cut(s)	400, 806, 865
BssMI	GATC	4 cut(s)	76, 140, 1038, 1136
BssT1I	CCWWGG	2 cut(s)	806, 865
Bst2UI	CCWGG	1 cut(s)	954
Bst4CI	ACNGT	2 cut(s)	528, 554
Bst6I	CTCTTC	3 cut(s)	282, 287, 706
BstAUI	TGTACA	1 cut(s)	721
BstBAI	YACGTR	1 cut(s)	562
BstC8I	GCNNGC	2 cut(s)	517, 521
BstDEI	CTNAG	7 cut(s)	390, 605, 707, 886, 945, 1116, 1195
BstDSI	CCRYGG	2 cut(s)	400, 806
BstF5I	GGATG	5 cut(s)	338, 535, 631, 858, 861
BstKTI	GATC	4 cut(s)	79, 143, 1041, 1139
BstMAI	GTCTC	2 cut(s)	1038, 1164
BstMBI	GATC	4 cut(s)	76, 140, 1038, 1136
BstMCI	CGRYCG	1 cut(s)	484
BstMWI	GCNNNNNNNGC	5 cut(s)	97, 156, 181, 776, 1148
BstNI	CCWGG	1 cut(s)	954
BstNSI	RCATGY	1 cut(s)	519
BstSCI	CCNGG	1 cut(s)	952
BstSFI	CTRYAG	1 cut(s)	93
BstSLI	GKGCMC	1 cut(s)	138
BstV1I	GCAGC	5 cut(s)	50, 290, 703, 933, 982
BstX2I	RGATCY	1 cut(s)	76
BstYI	RGATCY	1 cut(s)	76
Bsu15I	ATCGAT	1 cut(s)	143
BsuRI	GGCC	2 cut(s)	159, 558
BsuTUI	ATCGAT	1 cut(s)	143
BtgI	CCRYGG	2 cut(s)	400, 806
BtsCI	GGATG	5 cut(s)	338, 535, 631, 858, 861
Cac8I	GCNNGC	2 cut(s)	517, 521
CaiI	CAGNNNCTG	1 cut(s)	497
Cfr13I	GGNCC	1 cut(s)	386
ClaI	ATCGAT	1 cut(s)	143
Csp6I	GTAC	3 cut(s)	244, 722, 1001
CspCI	CAANNNNNGTGG	2 cut(s)	548, 583
CviAII	CATG	6 cut(s)	185, 329, 516, 749, 807, 1148
CviQI	GTAC	3 cut(s)	244, 722, 1001
DdeI	CTNAG	7 cut(s)	390, 605, 707, 886, 945, 1116, 1195
DpnI	GATC	4 cut(s)	78, 142, 1040, 1138
DpnII	GATC	4 cut(s)	76, 140, 1038, 1136
DraIII	CACNNNGTG	1 cut(s)	26
EaeI	YGGCCR	1 cut(s)	556
Eam1104I	CTCTTC	3 cut(s)	282, 287, 706
EarI	CTCTTC	3 cut(s)	282, 287, 706
Eco130I	CCWWGG	2 cut(s)	806, 865
Eco47I	GGWCC	1 cut(s)	386
EcoRI	GAATTC	1 cut(s)	448
EcoRII	CCWGG	1 cut(s)	952
EcoT14I	CCWWGG	2 cut(s)	806, 865
ErhI	CCWWGG	2 cut(s)	806, 865
Esp3I	CGTCTC	1 cut(s)	1164
FaeI	CATG	6 cut(s)	188, 332, 519, 752, 810, 1151
FatI	CATG	6 cut(s)	184, 328, 515, 748, 806, 1147
FauI	CCCGC	1 cut(s)	464
Fnu4HI	GCNGC	8 cut(s)	64, 301, 304, 314, 513, 717, 922, 971
FokI	GGATG	5 cut(s)	345, 522, 618, 848, 865
Fsp4HI	GCNGC	8 cut(s)	64, 301, 304, 314, 513, 717, 922, 971
FspBI	CTAG	6 cut(s)	23, 155, 348, 1034, 1080, 1161
GluI	GCNGC	8 cut(s)	64, 301, 304, 314, 513, 717, 922, 971
GsuI	CTGGAG	1 cut(s)	698
HaeIII	GGCC	2 cut(s)	159, 558
HapII	CCGG	2 cut(s)	484, 980
Hin1II	CATG	6 cut(s)	188, 332, 519, 752, 810, 1151
HindIII	AAGCTT	2 cut(s)	947, 995
HinfI	GANTC	7 cut(s)	50, 740, 842, 909, 1010, 1015, 1184
HpaII	CCGG	2 cut(s)	484, 980
HphI	GGTGA	2 cut(s)	38, 795
Hpy166II	GTNNAC	2 cut(s)	136, 823
Hpy188I	TCNGA	5 cut(s)	369, 814, 1043, 1093, 1198
Hpy188III	TCNNGA	8 cut(s)	238, 281, 353, 639, 677, 898, 1109, 1118
Hpy8I	GTNNAC	2 cut(s)	136, 823
HpyAV	CCTTC	3 cut(s)	64, 258, 1088
HpyCH4III	ACNGT	2 cut(s)	528, 554
HpyCH4IV	ACGT	3 cut(s)	114, 561, 615
HpyCH4V	TGCA	8 cut(s)	136, 274, 326, 336, 519, 579, 770, 921
HpyF10VI	GCNNNNNNNGC	5 cut(s)	97, 156, 181, 776, 1148
HpyF3I	CTNAG	7 cut(s)	390, 605, 707, 886, 945, 1116, 1195
HpySE526I	ACGT	3 cut(s)	114, 561, 615
Hsp92II	CATG	6 cut(s)	188, 332, 519, 752, 810, 1151
Kzo9I	GATC	4 cut(s)	76, 140, 1038, 1136
LguI	GCTCTTC	1 cut(s)	706
LmnI	GCTCC	2 cut(s)	682, 1156
Lsp1109I	GCAGC	5 cut(s)	50, 290, 703, 933, 982
LweI	GCATC	4 cut(s)	313, 323, 591, 1102
MaeI	CTAG	6 cut(s)	23, 155, 348, 1034, 1080, 1161
MaeII	ACGT	3 cut(s)	114, 561, 615
MaeIII	GTNAC	3 cut(s)	110, 430, 611
MalI	GATC	4 cut(s)	78, 142, 1040, 1138
MboI	GATC	4 cut(s)	76, 140, 1038, 1136
MboII	GAAGA	5 cut(s)	71, 299, 304, 452, 723
MfeI	CAATTG	1 cut(s)	880
MflI	RGATCY	1 cut(s)	76
MhlI	GDGCHC	2 cut(s)	102, 138
MlsI	TGGCCA	1 cut(s)	558
MluCI	AATT	7 cut(s)	15, 269, 276, 448, 686, 880, 940
MluNI	TGGCCA	1 cut(s)	558
MlyI	GAGTC	2 cut(s)	1004, 1193
MmeI	TCCRAC	1 cut(s)	227
MnlI	CCTC	5 cut(s)	31, 277, 409, 673, 1165
Mox20I	TGGCCA	1 cut(s)	558
MroXI	GAANNNNTTC	1 cut(s)	1102
MscI	TGGCCA	1 cut(s)	558
MseI	TTAA	8 cut(s)	458, 549, 585, 729, 963, 993, 1028, 1190
MslI	CAYNNNNRTG	1 cut(s)	331
Msp20I	TGGCCA	1 cut(s)	558
MspA1I	CMGCKG	2 cut(s)	383, 1142
MspI	CCGG	2 cut(s)	484, 980
MspR9I	CCNGG	1 cut(s)	954
MunI	CAATTG	1 cut(s)	880
MvaI	CCWGG	1 cut(s)	954
MwoI	GCNNNNNNNGC	5 cut(s)	97, 156, 181, 776, 1148
NcoI	CCATGG	1 cut(s)	806
NdeII	GATC	4 cut(s)	76, 140, 1038, 1136
NlaIII	CATG	6 cut(s)	188, 332, 519, 752, 810, 1151
NlaIV	GGNNCC	1 cut(s)	1099
NmeAIII	GCCGAG	1 cut(s)	1153
NmuCI	GTSAC	1 cut(s)	110
NspI	RCATGY	1 cut(s)	519
PaeI	GCATGC	1 cut(s)	519
PciSI	GCTCTTC	1 cut(s)	706
PdmI	GAANNNNTTC	1 cut(s)	1102
PfeI	GAWTC	5 cut(s)	50, 740, 842, 909, 1015
PkrI	GCNGC	8 cut(s)	65, 302, 305, 315, 514, 718, 923, 972
PleI	GAGTC	2 cut(s)	1004, 1192
PpsI	GAGTC	2 cut(s)	1004, 1192
Ppu21I	YACGTR	1 cut(s)	562
PsiI	TTATAA	1 cut(s)	933
Psp1406I	AACGTT	1 cut(s)	615
Psp6I	CCWGG	1 cut(s)	952
PspGI	CCWGG	1 cut(s)	952
PspN4I	GGNNCC	1 cut(s)	1099
PspPI	GGNCC	1 cut(s)	386
PstNI	CAGNNNCTG	1 cut(s)	497
PsuI	RGATCY	1 cut(s)	76
PvuII	CAGCTG	2 cut(s)	383, 1142
RsaI	GTAC	3 cut(s)	245, 723, 1002
RsaNI	GTAC	3 cut(s)	244, 722, 1001
RseI	CAYNNNNRTG	1 cut(s)	331
SapI	GCTCTTC	1 cut(s)	706
SaqAI	TTAA	8 cut(s)	458, 549, 585, 729, 963, 993, 1028, 1190
SatI	GCNGC	8 cut(s)	64, 301, 304, 314, 513, 717, 922, 971
Sau3AI	GATC	4 cut(s)	76, 140, 1038, 1136
Sau96I	GGNCC	1 cut(s)	386
SchI	GAGTC	2 cut(s)	1004, 1193
ScrFI	CCNGG	1 cut(s)	954
SduI	GDGCHC	2 cut(s)	102, 138
SfaNI	GCATC	4 cut(s)	313, 323, 591, 1102
SfcI	CTRYAG	1 cut(s)	93
SinI	GGWCC	1 cut(s)	386
SmiMI	CAYNNNNRTG	1 cut(s)	331
SmlI	CTYRAG	2 cut(s)	236, 281
SmoI	CTYRAG	2 cut(s)	236, 281
SpeI	ACTAGT	1 cut(s)	1160
SphI	GCATGC	1 cut(s)	519
Sse9I	AATT	7 cut(s)	15, 269, 276, 448, 686, 880, 940
SsiI	CCGC	5 cut(s)	173, 300, 314, 471, 513
SspMI	CTAG	6 cut(s)	23, 155, 348, 1034, 1080, 1161
StyD4I	CCNGG	1 cut(s)	952
StyI	CCWWGG	2 cut(s)	806, 865
TaaI	ACNGT	2 cut(s)	528, 554
TaiI	ACGT	3 cut(s)	117, 564, 618
TaqI	TCGA	5 cut(s)	143, 897, 912, 958, 1013
TasI	AATT	7 cut(s)	15, 269, 276, 448, 686, 880, 940
TatI	WGTACW	1 cut(s)	721
TauI	GCSGC	3 cut(s)	303, 316, 515
TfiI	GAWTC	5 cut(s)	50, 740, 842, 909, 1015
Tru1I	TTAA	8 cut(s)	458, 549, 585, 729, 963, 993, 1028, 1190
Tru9I	TTAA	8 cut(s)	458, 549, 585, 729, 963, 993, 1028, 1190
TseFI	GTSAC	1 cut(s)	110
TseI	GCWGC	5 cut(s)	63, 303, 716, 921, 970
Tsp45I	GTSAC	1 cut(s)	110
TspDTI	ATGAA	7 cut(s)	17, 45, 46, 212, 453, 524, 609
TspGWI	ACGGA	1 cut(s)	479
VneI	GTGCAC	1 cut(s)	134
VpaK11BI	GGWCC	1 cut(s)	386
XapI	RAATTY	3 cut(s)	15, 276, 448
XceI	RCATGY	1 cut(s)	519
XmnI	GAANNNNTTC	1 cut(s)	1102
XspI	CTAG	6 cut(s)	23, 155, 348, 1034, 1080, 1161

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.