Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0005665

Physical Location & Seq

Genomic Coordinates Reverse (-)

46950537 .. 46953748

Gene Structure 3212 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G024120.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 924 bp

ATGGAGTCGGAGTCGGAGGAATTCTCCGACCGCTTCGTCTGCTGCATGTGTCTGGAACTTCTGTACAAGCCTATAGTGCTCTCCTGTGGGCACGTTTCGTGTTTCTGGTGCGTGCATCGATCCATGAGTGGTGAAAAGCATTCTCATTGCCCGCTTTGTCGGCATCCCTATAATCACTTTCCGACTATATGTCAATTGCTTCATTGTTTACTGCTCAACTCGTATCCTGTTGCTTATAAGAAGAGGGAATTGCAAATTCTAGAAGAAGAGAAGAGAACTGGCTACTTCTCACCACAGCTTGATGTTCAGGCTTGGAGCTCACAAGCTGATCAAGACTCAAATATTCCGGGCGACTCTGTAAGCAAAGAGTTGAGTGCAAATATGCAGGAAACAGTTTTCGATTCATATAATCTAAACAATGGCATAGCGGTTTCTAGGCCTACTGATGGTGGAGACTATGAGGGAATGGAGAATGTTACTGAGCAAGTAAAGAATCCCCTGTTATCTCAGCAGCAGAGCGGAAGTCCCAAGCAGATTTCAGTTGCAGATGTGCTTTGTGCTGCTTGCAAAGGACTGCTGTTTCGTCCTGTGGTTCTTAACTGTGGCCATGTATATTGTGAAAGTTGTATCGTCAAACAAGATGAAGAGAAGATTAGATGTCAAGTTTGTCAAAGTTTCCATCCAACCAGATATCCAAAAGTTTGTTTGGATCTGCAAAACTTTTTGATCGAACAGTTTCCTAAAGAACTTGCACATAGAAGAGATGGTGTACAGCGTAAGCATGTTAATCCAACTACATGTGAAAGCAAAAGCAGTAAAGAAGCAGAGAAGTCATCATCGGGTTCATATCACATAGGAGTTGGCTGTGATTATTGTGGGGTATACTTAATTCTTTACTTCTTTCTCTGCACATTGATGCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009605 GO:0009607 GO:0009620 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043207 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0050832 GO:0050896 GO:0051603 GO:0051704 GO:0051707 GO:0061630 GO:0061659 GO:0070647 GO:0071596 GO:0071704 GO:0098542 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ZZ zf-C3HC4_3 zf-C3HC4_4 zf-RING_UBOX

Protein Analysis

307

Amino Acids

34.78

Weight (kDa)

5.95

Isoelectric Point (pI)

58.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-C3HC4_3	PF13920	13 - 58	2.1e-06	Zinc finger, C3HC4 type (RING finger)
zf-RING_UBOX	PF13445	186 - 220	2.8e-06	RING-type zinc-finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005665)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G24800
fragaria_vesca	FvH4_2g19100 FvH4_2g19100 FvH4_2g19100 FvH4_6g51520
malus_domestica	MD10G1165000.v1.1
prunus_persica	Prupe.8G203400_v2.0.a1 Prupe.8G203400_v2.0.a1 Prupe.8G203400_v2.0.a1
pyrus_communis	pycom10g14220
rosa_chinensis	RchiOBHm_Chr6g0284931
rosa_laevigata	RLG00000012700 RLG00000012701
rosa_multiflora	Rmu_sc0004961.1_g000001 Rmu_sc0004961.1_g000002
rosa_roxburghii	Rroxscaffold_7G00183950 Rroxscaffold_7G00183960 Rroxscaffold_7G00184220
rosa_rugosa	Rorug06G0168600 Rorug06G0168700
rosa_samantha	Rh6AG280700 Rh6BG281000 Rh6BG281100 Rh6BG281200 Rh6BG281300 Rh6CG283000 Rh6DG276100
rosa_wichuraiana	Rw6G024120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	237
AasI	GACNNNNNNGTC	1 cut(s)	35
AccBSI	CCGCTC	1 cut(s)	519
AccI	GTMKAC	1 cut(s)	882
AciI	CCGC	4 cut(s)	31, 152, 428, 519
AclWI	GGATC	2 cut(s)	114, 717
AcoI	YGGCCR	1 cut(s)	604
AcsI	RAATTY	2 cut(s)	20, 255
AfaI	GTAC	2 cut(s)	65, 771
AfiI	CCNNNNNNNGG	1 cut(s)	446
AflIII	ACRYGT	1 cut(s)	797
AhdI	GACNNNNNGTC	1 cut(s)	189
AluBI	AGCT	3 cut(s)	298, 318, 326
AluI	AGCT	3 cut(s)	298, 318, 326
Alw21I	GWGCWC	2 cut(s)	81, 320
Alw26I	GTCTC	1 cut(s)	447
AlwI	GGATC	2 cut(s)	114, 717
AoxI	GGCC	2 cut(s)	437, 604
ApeKI	GCWGC	3 cut(s)	42, 511, 560
ApoI	RAATTY	2 cut(s)	20, 255
ArsI	GACNNNNNNTTYG	2 cut(s)	564, 596
Asp700I	GAANNNNTTC	1 cut(s)	735
AsuC2I	CCSGG	1 cut(s)	348
AsuHPI	GGTGA	2 cut(s)	143, 282
BaeGI	GKGCMC	1 cut(s)	93
BalI	TGGCCA	1 cut(s)	606
BanII	GRGCYC	1 cut(s)	320
Bbv12I	GWGCWC	2 cut(s)	81, 320
BbvI	GCAGC	3 cut(s)	29, 523, 547
BccI	CCATC	3 cut(s)	440, 687, 758
BciVI	GTATCC	1 cut(s)	234
BclI	TGATCA	1 cut(s)	328
BcnI	CCSGG	1 cut(s)	348
BcoDI	GTCTC	1 cut(s)	447
BfaI	CTAG	2 cut(s)	260, 435
BfmI	CTRYAG	1 cut(s)	72
BfuI	GTATCC	1 cut(s)	234
BisI	GCNGC	3 cut(s)	43, 512, 561
BlsI	GCNGC	3 cut(s)	44, 513, 562
Bme1390I	CCNGG	1 cut(s)	348
BmeRI	GACNNNNNGTC	1 cut(s)	189
BmrFI	CCNGG	1 cut(s)	348
BmsI	GCATC	3 cut(s)	124, 172, 906
BplI	GAGNNNNNCTC	2 cut(s)	8, 40
BpuMI	CCSGG	1 cut(s)	348
Bsa29I	ATCGAT	1 cut(s)	118
BsaXI	ACNNNNNCTCC	1 cut(s)	26
Bsc4I	CCNNNNNNNGG	1 cut(s)	446
Bse1I	ACTGG	1 cut(s)	283
Bse3DI	GCAATG	1 cut(s)	145
BseCI	ATCGAT	1 cut(s)	118
BseGI	GGATG	2 cut(s)	163, 679
BseLI	CCNNNNNNNGG	1 cut(s)	446
BseMI	GCAATG	1 cut(s)	145
BseMII	CTCAG	2 cut(s)	471, 521
BseNI	ACTGG	1 cut(s)	283
BseSI	GKGCMC	1 cut(s)	93
BseXI	GCAGC	3 cut(s)	29, 523, 547
BsgI	GTGCAG	1 cut(s)	892
Bsh1285I	CGRYCG	1 cut(s)	31
BshFI	GGCC	2 cut(s)	439, 606
BshVI	ATCGAT	1 cut(s)	118
BsiEI	CGRYCG	1 cut(s)	31
BsiHKAI	GWGCWC	2 cut(s)	81, 320
BsiSI	CCGG	1 cut(s)	347
BslFI	GGGAC	1 cut(s)	510
BslI	CCNNNNNNNGG	1 cut(s)	446
BsmAI	GTCTC	1 cut(s)	447
BsmFI	GGGAC	1 cut(s)	510
BsmI	GAATGC	1 cut(s)	139
BsnI	GGCC	2 cut(s)	439, 606
Bsp1286I	GDGCHC	3 cut(s)	81, 93, 320
Bsp1407I	TGTACA	2 cut(s)	63, 769
Bsp143I	GATC	4 cut(s)	119, 328, 709, 726
BspACI	CCGC	4 cut(s)	31, 152, 428, 519
BspANI	GGCC	2 cut(s)	439, 606
BspCNI	CTCAG	2 cut(s)	472, 520
BspDI	ATCGAT	1 cut(s)	118
BspPI	GGATC	2 cut(s)	114, 717
BsrBI	CCGCTC	1 cut(s)	519
BsrDI	GCAATG	1 cut(s)	145
BsrGI	TGTACA	2 cut(s)	63, 769
BsrI	ACTGG	1 cut(s)	283
BssMI	GATC	4 cut(s)	119, 328, 709, 726
BssNAI	GTATAC	1 cut(s)	883
Bst1107I	GTATAC	1 cut(s)	883
Bst4CI	ACNGT	3 cut(s)	394, 602, 735
Bst6I	CTCTTC	5 cut(s)	236, 261, 266, 639, 754
BstAUI	TGTACA	2 cut(s)	63, 769
BstC8I	GCNNGC	3 cut(s)	113, 152, 565
BstDEI	CTNAG	2 cut(s)	480, 507
BstF5I	GGATG	2 cut(s)	163, 679
BstKTI	GATC	4 cut(s)	122, 331, 712, 729
BstMAI	GTCTC	1 cut(s)	447
BstMBI	GATC	4 cut(s)	119, 328, 709, 726
BstMCI	CGRYCG	1 cut(s)	31
BstMWI	GCNNNNNNNGC	3 cut(s)	39, 76, 160
BstNSI	RCATGY	3 cut(s)	49, 785, 801
BstSCI	CCNGG	1 cut(s)	346
BstSFI	CTRYAG	1 cut(s)	72
BstSLI	GKGCMC	1 cut(s)	93
BstV1I	GCAGC	3 cut(s)	29, 523, 547
BstX2I	RGATCY	1 cut(s)	709
BstYI	RGATCY	1 cut(s)	709
BstZ17I	GTATAC	1 cut(s)	883
Bsu15I	ATCGAT	1 cut(s)	118
BsuI	GTATCC	1 cut(s)	234
BsuRI	GGCC	2 cut(s)	439, 606
BsuTUI	ATCGAT	1 cut(s)	118
BtsCI	GGATG	2 cut(s)	163, 679
Cac8I	GCNNGC	3 cut(s)	113, 152, 565
ClaI	ATCGAT	1 cut(s)	118
Csp6I	GTAC	2 cut(s)	64, 770
CviAII	CATG	5 cut(s)	46, 124, 608, 782, 798
CviJI	RGCY	9 cut(s)	70, 282, 298, 311, 318, 326, 439, 606, 864
CviKI_1	RGCY	9 cut(s)	70, 282, 298, 311, 318, 326, 439, 606, 864
CviQI	GTAC	2 cut(s)	64, 770
DdeI	CTNAG	2 cut(s)	480, 507
DpnI	GATC	4 cut(s)	121, 330, 711, 728
DpnII	GATC	4 cut(s)	119, 328, 709, 726
DrdI	GACNNNNNNGTC	1 cut(s)	35
DriI	GACNNNNNGTC	1 cut(s)	189
DseDI	GACNNNNNNGTC	1 cut(s)	35
EaeI	YGGCCR	1 cut(s)	604
Eam1104I	CTCTTC	5 cut(s)	236, 261, 266, 639, 754
Eam1105I	GACNNNNNGTC	1 cut(s)	189
EarI	CTCTTC	5 cut(s)	236, 261, 266, 639, 754
Ecl136II	GAGCTC	1 cut(s)	318
Eco147I	AGGCCT	1 cut(s)	439
Eco24I	GRGCYC	1 cut(s)	320
Eco32I	GATATC	1 cut(s)	692
Eco53kI	GAGCTC	1 cut(s)	318
EcoICRI	GAGCTC	1 cut(s)	318
EcoRI	GAATTC	1 cut(s)	20
EcoRV	GATATC	1 cut(s)	692
EcoT38I	GRGCYC	1 cut(s)	320
FaeI	CATG	5 cut(s)	49, 127, 611, 785, 801
FaqI	GGGAC	1 cut(s)	510
FatI	CATG	5 cut(s)	45, 123, 607, 781, 797
FauI	CCCGC	1 cut(s)	159
FbaI	TGATCA	1 cut(s)	328
FblI	GTMKAC	1 cut(s)	882
Fnu4HI	GCNGC	3 cut(s)	43, 512, 561
FokI	GGATG	2 cut(s)	150, 666
FriOI	GRGCYC	1 cut(s)	320
Fsp4HI	GCNGC	3 cut(s)	43, 512, 561
FspBI	CTAG	2 cut(s)	260, 435
GluI	GCNGC	3 cut(s)	43, 512, 561
HaeIII	GGCC	2 cut(s)	439, 606
HapII	CCGG	1 cut(s)	347
Hin1II	CATG	5 cut(s)	49, 127, 611, 785, 801
HinfI	GANTC	6 cut(s)	5, 11, 335, 353, 401, 493
HpaII	CCGG	1 cut(s)	347
HphI	GGTGA	2 cut(s)	143, 282
Hpy166II	GTNNAC	3 cut(s)	209, 770, 883
Hpy188I	TCNGA	4 cut(s)	10, 16, 28, 183
Hpy188III	TCNNGA	3 cut(s)	53, 260, 332
Hpy8I	GTNNAC	3 cut(s)	209, 770, 883
HpyCH4III	ACNGT	3 cut(s)	394, 602, 735
HpyCH4IV	ACGT	1 cut(s)	93
HpyF10VI	GCNNNNNNNGC	3 cut(s)	39, 76, 160
HpyF3I	CTNAG	2 cut(s)	480, 507
HpySE526I	ACGT	1 cut(s)	93
Hsp92II	CATG	5 cut(s)	49, 127, 611, 785, 801
Ksp22I	TGATCA	1 cut(s)	328
Kzo9I	GATC	4 cut(s)	119, 328, 709, 726
LmnI	GCTCC	1 cut(s)	315
Lsp1109I	GCAGC	3 cut(s)	29, 523, 547
LweI	GCATC	3 cut(s)	124, 172, 906
MaeI	CTAG	2 cut(s)	260, 435
MaeII	ACGT	1 cut(s)	93
MaeIII	GTNAC	1 cut(s)	475
MalI	GATC	4 cut(s)	121, 330, 711, 728
MbiI	CCGCTC	1 cut(s)	519
MboI	GATC	4 cut(s)	119, 328, 709, 726
MboII	GAAGA	7 cut(s)	253, 275, 278, 283, 656, 661, 771
MfeI	CAATTG	1 cut(s)	194
MflI	RGATCY	1 cut(s)	709
MhlI	GDGCHC	3 cut(s)	81, 93, 320
MlsI	TGGCCA	1 cut(s)	606
MluCI	AATT	5 cut(s)	20, 194, 248, 255, 888
MluNI	TGGCCA	1 cut(s)	606
MlyI	GAGTC	4 cut(s)	14, 20, 329, 347
MmeI	TCCRAC	4 cut(s)	51, 206, 707, 815
MnlI	CCTC	3 cut(s)	10, 237, 454
Mox20I	TGGCCA	1 cut(s)	606
MroXI	GAANNNNTTC	1 cut(s)	735
MscI	TGGCCA	1 cut(s)	606
MseI	TTAA	3 cut(s)	597, 786, 887
MslI	CAYNNNNRTG	1 cut(s)	914
Msp20I	TGGCCA	1 cut(s)	606
MspI	CCGG	1 cut(s)	347
MspR9I	CCNGG	1 cut(s)	348
MunI	CAATTG	1 cut(s)	194
Mva1269I	GAATGC	1 cut(s)	139
MwoI	GCNNNNNNNGC	3 cut(s)	39, 76, 160
NciI	CCSGG	1 cut(s)	348
NdeII	GATC	4 cut(s)	119, 328, 709, 726
NlaIII	CATG	5 cut(s)	49, 127, 611, 785, 801
NspI	RCATGY	3 cut(s)	49, 785, 801
PceI	AGGCCT	1 cut(s)	439
PciI	ACATGT	1 cut(s)	797
PctI	GAATGC	1 cut(s)	139
PdmI	GAANNNNTTC	1 cut(s)	735
PfeI	GAWTC	2 cut(s)	401, 493
PkrI	GCNGC	3 cut(s)	44, 513, 562
PleI	GAGTC	4 cut(s)	13, 19, 329, 347
PpsI	GAGTC	4 cut(s)	13, 19, 329, 347
PscI	ACATGT	1 cut(s)	797
PsiI	TTATAA	1 cut(s)	237
Psp124BI	GAGCTC	1 cut(s)	320
PsuI	RGATCY	1 cut(s)	709
RsaI	GTAC	2 cut(s)	65, 771
RsaNI	GTAC	2 cut(s)	64, 770
RseI	CAYNNNNRTG	1 cut(s)	914
SacI	GAGCTC	1 cut(s)	320
SaqAI	TTAA	3 cut(s)	597, 786, 887
SatI	GCNGC	3 cut(s)	43, 512, 561
Sau3AI	GATC	4 cut(s)	119, 328, 709, 726
SchI	GAGTC	4 cut(s)	14, 20, 329, 347
ScrFI	CCNGG	1 cut(s)	348
SduI	GDGCHC	3 cut(s)	81, 93, 320
SetI	ASST	4 cut(s)	96, 300, 320, 328
SfaNI	GCATC	3 cut(s)	124, 172, 906
SfcI	CTRYAG	1 cut(s)	72
SmiMI	CAYNNNNRTG	1 cut(s)	914
Sse9I	AATT	5 cut(s)	20, 194, 248, 255, 888
SseBI	AGGCCT	1 cut(s)	439
SsiI	CCGC	4 cut(s)	31, 152, 428, 519
SspI	AATATT	1 cut(s)	343
SspMI	CTAG	2 cut(s)	260, 435
SstI	GAGCTC	1 cut(s)	320
StuI	AGGCCT	1 cut(s)	439
StyD4I	CCNGG	1 cut(s)	346
TaaI	ACNGT	3 cut(s)	394, 602, 735
TaiI	ACGT	1 cut(s)	96
TaqI	TCGA	3 cut(s)	118, 399, 729
TasI	AATT	5 cut(s)	20, 194, 248, 255, 888
TatI	WGTACW	2 cut(s)	63, 769
TfiI	GAWTC	2 cut(s)	401, 493
Tru1I	TTAA	3 cut(s)	597, 786, 887
Tru9I	TTAA	3 cut(s)	597, 786, 887
TseI	GCWGC	3 cut(s)	42, 511, 560
TspDTI	ATGAA	4 cut(s)	191, 393, 657, 834
XapI	RAATTY	2 cut(s)	20, 255
XbaI	TCTAGA	1 cut(s)	259
XceI	RCATGY	3 cut(s)	49, 785, 801
XmiI	GTMKAC	1 cut(s)	882
XmnI	GAANNNNTTC	1 cut(s)	735
XspI	CTAG	2 cut(s)	260, 435

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.