Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004961.1

Orthogroup ID

OG0005665

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 2647

Gene Structure 2646 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004961.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 953 bp

atggagtcggagtcggagtcggagtcggaggaattctccgaccgcttcgtctgctgcatgtgtctggaacttctgtacaagcctatagtgctctcctgtgggcacgtttcgtgtttctggtgcgtgcatcgatccatgagcggtgaaaagcaatctcattgcccgctttgtcggcatccctataatcactttccgactatatgtcaattgcttcattgtttactgcttaactcgtatcctgttgcttataagaagagggaattgcaaattctagaagaagagaagaaaactggctacttctcaccacagcttgatgttcaggcttggagctcacaagctgatcaagactcaaatattccgggcgactctgtaagcaaagagttgagtgcaaatatgcaggaaacagttttcgattcatataatctaaacaatggcatagcggtttctaggcctactgatggtggagactatgagggaatggagaatgttactgaccaagtaaagaatcccctgttatctcagcagcagagcggaagtcccaagcagatttcagttgcagatgtgctttgtgctgcttgcaaaggactgctgtttcgtcctgtggttcttaactgtggccatgtatattgtgaaagttgtatcgtcaaacaagatgaaaagaagattagatgtcaatttcctaaagaacttgcacatagaagagatggtgtacagcataagcatgttaatccaactacatgtgaaagcaaaagcagtaaagaagcagagaagtcatcatcgggttcatatcacagtggagttggctgtgattattgtgggatgtatccgataattggggatagataccggtgcaaagattgtgtggagaaaatcggatttgacctttgcaatgattgttataatactagttccaagcttccaggtcgatttaatcagcaacatacagcagaaca

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009605 GO:0009607 GO:0009620 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043207 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0050832 GO:0050896 GO:0051603 GO:0051704 GO:0051707 GO:0061630 GO:0061659 GO:0070647 GO:0071596 GO:0071704 GO:0098542 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ZZ zf-C3HC4_3 zf-C3HC4_4 zf-RING_UBOX

Protein Analysis

317

Amino Acids

35.64

Weight (kDa)

5.86

Isoelectric Point (pI)

53.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005665)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G24800
fragaria_vesca	FvH4_2g19100 FvH4_2g19100 FvH4_2g19100 FvH4_6g51520
malus_domestica	MD10G1165000.v1.1
prunus_persica	Prupe.8G203400_v2.0.a1 Prupe.8G203400_v2.0.a1 Prupe.8G203400_v2.0.a1
pyrus_communis	pycom10g14220
rosa_chinensis	RchiOBHm_Chr6g0284931
rosa_laevigata	RLG00000012700 RLG00000012701
rosa_multiflora	Rmu_sc0004961.1_g000001 Rmu_sc0004961.1_g000002
rosa_roxburghii	Rroxscaffold_7G00183950 Rroxscaffold_7G00183960 Rroxscaffold_7G00184220
rosa_rugosa	Rorug06G0168600 Rorug06G0168700
rosa_samantha	Rh6AG280700 Rh6BG281000 Rh6BG281100 Rh6BG281200 Rh6BG281300 Rh6CG283000 Rh6DG276100
rosa_wichuraiana	Rw6G024120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	249, 900
AasI	GACNNNNNNGTC	1 cut(s)	47
AccBSI	CCGCTC	2 cut(s)	141, 531
AciI	CCGC	5 cut(s)	43, 141, 164, 440, 531
AclWI	GGATC	1 cut(s)	126
AcoI	YGGCCR	1 cut(s)	616
AcsI	RAATTY	2 cut(s)	32, 267
AfaI	GTAC	2 cut(s)	77, 711
AfiI	CCNNNNNNNGG	2 cut(s)	458, 833
AflIII	ACRYGT	1 cut(s)	737
AgeI	ACCGGT	1 cut(s)	846
AhdI	GACNNNNNGTC	1 cut(s)	201
AhlI	ACTAGT	1 cut(s)	905
AjnI	CCWGG	1 cut(s)	919
AluBI	AGCT	4 cut(s)	310, 330, 338, 916
AluI	AGCT	4 cut(s)	310, 330, 338, 916
Alw21I	GWGCWC	2 cut(s)	93, 332
Alw26I	GTCTC	1 cut(s)	459
AlwI	GGATC	1 cut(s)	126
AoxI	GGCC	2 cut(s)	449, 616
ApeKI	GCWGC	3 cut(s)	54, 523, 572
ApoI	RAATTY	2 cut(s)	32, 267
ArsI	GACNNNNNNTTYG	2 cut(s)	576, 608
AsiGI	ACCGGT	1 cut(s)	846
AsuC2I	CCSGG	1 cut(s)	360
AsuHPI	GGTGA	2 cut(s)	155, 294
BaeGI	GKGCMC	1 cut(s)	105
BalI	TGGCCA	1 cut(s)	618
BanII	GRGCYC	1 cut(s)	332
Bbv12I	GWGCWC	2 cut(s)	93, 332
BbvI	GCAGC	3 cut(s)	41, 535, 559
BccI	CCATC	2 cut(s)	452, 698
BciT130I	CCWGG	1 cut(s)	921
BciVI	GTATCC	2 cut(s)	246, 834
BclI	TGATCA	1 cut(s)	340
BcnI	CCSGG	1 cut(s)	360
BcoDI	GTCTC	1 cut(s)	459
BcuI	ACTAGT	1 cut(s)	905
BfaI	CTAG	3 cut(s)	272, 447, 906
BfmI	CTRYAG	1 cut(s)	84
BfuI	GTATCC	2 cut(s)	246, 834
BisI	GCNGC	3 cut(s)	55, 524, 573
BlsI	GCNGC	3 cut(s)	56, 525, 574
Bme1390I	CCNGG	2 cut(s)	360, 921
BmeRI	GACNNNNNGTC	1 cut(s)	201
BmrFI	CCNGG	2 cut(s)	360, 921
BmsI	GCATC	2 cut(s)	136, 184
BplI	GAGNNNNNCTC	2 cut(s)	20, 52
BpuMI	CCSGG	1 cut(s)	360
Bsa29I	ATCGAT	1 cut(s)	130
BsaWI	WCCGGW	1 cut(s)	846
BsaXI	ACNNNNNCTCC	4 cut(s)	8, 26, 32, 38
Bsc4I	CCNNNNNNNGG	2 cut(s)	458, 833
Bse118I	RCCGGY	1 cut(s)	846
Bse1I	ACTGG	1 cut(s)	295
Bse3DI	GCAATG	2 cut(s)	157, 895
BseBI	CCWGG	1 cut(s)	921
BseCI	ATCGAT	1 cut(s)	130
BseGI	GGATG	2 cut(s)	175, 825
BseLI	CCNNNNNNNGG	2 cut(s)	458, 833
BseMI	GCAATG	2 cut(s)	157, 895
BseMII	CTCAG	1 cut(s)	533
BseNI	ACTGG	1 cut(s)	295
BseSI	GKGCMC	1 cut(s)	105
BseXI	GCAGC	3 cut(s)	41, 535, 559
Bsh1285I	CGRYCG	1 cut(s)	43
BshFI	GGCC	2 cut(s)	451, 618
BshTI	ACCGGT	1 cut(s)	846
BshVI	ATCGAT	1 cut(s)	130
BsiEI	CGRYCG	1 cut(s)	43
BsiHKAI	GWGCWC	2 cut(s)	93, 332
BsiSI	CCGG	2 cut(s)	359, 847
BslFI	GGGAC	1 cut(s)	522
BslI	CCNNNNNNNGG	2 cut(s)	458, 833
BsmAI	GTCTC	1 cut(s)	459
BsmFI	GGGAC	1 cut(s)	522
BsnI	GGCC	2 cut(s)	451, 618
Bsp1286I	GDGCHC	3 cut(s)	93, 105, 332
Bsp1407I	TGTACA	2 cut(s)	75, 709
Bsp143I	GATC	2 cut(s)	131, 340
BspACI	CCGC	5 cut(s)	43, 141, 164, 440, 531
BspANI	GGCC	2 cut(s)	451, 618
BspCNI	CTCAG	1 cut(s)	532
BspDI	ATCGAT	1 cut(s)	130
BspPI	GGATC	1 cut(s)	126
BsrBI	CCGCTC	2 cut(s)	141, 531
BsrDI	GCAATG	2 cut(s)	157, 895
BsrFI	RCCGGY	1 cut(s)	846
BsrGI	TGTACA	2 cut(s)	75, 709
BsrI	ACTGG	1 cut(s)	295
BssAI	RCCGGY	1 cut(s)	846
BssMI	GATC	2 cut(s)	131, 340
Bst2UI	CCWGG	1 cut(s)	921
Bst4CI	ACNGT	3 cut(s)	406, 614, 794
Bst6I	CTCTTC	3 cut(s)	248, 273, 694
BstAUI	TGTACA	2 cut(s)	75, 709
BstC8I	GCNNGC	3 cut(s)	125, 164, 577
BstDEI	CTNAG	1 cut(s)	519
BstF5I	GGATG	2 cut(s)	175, 825
BstKTI	GATC	2 cut(s)	134, 343
BstMAI	GTCTC	1 cut(s)	459
BstMBI	GATC	2 cut(s)	131, 340
BstMCI	CGRYCG	1 cut(s)	43
BstMWI	GCNNNNNNNGC	3 cut(s)	51, 88, 172
BstNI	CCWGG	1 cut(s)	921
BstNSI	RCATGY	3 cut(s)	61, 725, 741
BstSCI	CCNGG	2 cut(s)	358, 919
BstSFI	CTRYAG	1 cut(s)	84
BstSLI	GKGCMC	1 cut(s)	105
BstV1I	GCAGC	3 cut(s)	41, 535, 559
Bsu15I	ATCGAT	1 cut(s)	130
BsuI	GTATCC	2 cut(s)	246, 834
BsuRI	GGCC	2 cut(s)	451, 618
BsuTUI	ATCGAT	1 cut(s)	130
BtsCI	GGATG	2 cut(s)	175, 825
BtsIMutI	CAGTG	1 cut(s)	799
Cac8I	GCNNGC	3 cut(s)	125, 164, 577
Cfr10I	RCCGGY	1 cut(s)	846
ClaI	ATCGAT	1 cut(s)	130
Csp6I	GTAC	2 cut(s)	76, 710
CspAI	ACCGGT	1 cut(s)	846
CviAII	CATG	5 cut(s)	58, 136, 620, 722, 738
CviQI	GTAC	2 cut(s)	76, 710
DdeI	CTNAG	1 cut(s)	519
DpnI	GATC	2 cut(s)	133, 342
DpnII	GATC	2 cut(s)	131, 340
DrdI	GACNNNNNNGTC	1 cut(s)	47
DriI	GACNNNNNGTC	1 cut(s)	201
DseDI	GACNNNNNNGTC	1 cut(s)	47
EaeI	YGGCCR	1 cut(s)	616
Eam1104I	CTCTTC	3 cut(s)	248, 273, 694
Eam1105I	GACNNNNNGTC	1 cut(s)	201
EarI	CTCTTC	3 cut(s)	248, 273, 694
Ecl136II	GAGCTC	1 cut(s)	330
Eco147I	AGGCCT	1 cut(s)	451
Eco24I	GRGCYC	1 cut(s)	332
Eco53kI	GAGCTC	1 cut(s)	330
EcoICRI	GAGCTC	1 cut(s)	330
EcoRI	GAATTC	1 cut(s)	32
EcoRII	CCWGG	1 cut(s)	919
EcoT38I	GRGCYC	1 cut(s)	332
FaeI	CATG	5 cut(s)	61, 139, 623, 725, 741
FaqI	GGGAC	1 cut(s)	522
FatI	CATG	5 cut(s)	57, 135, 619, 721, 737
FauI	CCCGC	1 cut(s)	171
FbaI	TGATCA	1 cut(s)	340
Fnu4HI	GCNGC	3 cut(s)	55, 524, 573
FokI	GGATG	2 cut(s)	162, 832
FriOI	GRGCYC	1 cut(s)	332
Fsp4HI	GCNGC	3 cut(s)	55, 524, 573
FspBI	CTAG	3 cut(s)	272, 447, 906
GluI	GCNGC	3 cut(s)	55, 524, 573
HaeIII	GGCC	2 cut(s)	451, 618
HapII	CCGG	2 cut(s)	359, 847
Hin1II	CATG	5 cut(s)	61, 139, 623, 725, 741
HindIII	AAGCTT	1 cut(s)	914
HinfI	GANTC	8 cut(s)	5, 11, 17, 23, 347, 365, 413, 505
HpaII	CCGG	2 cut(s)	359, 847
HphI	GGTGA	2 cut(s)	155, 294
Hpy166II	GTNNAC	2 cut(s)	221, 710
Hpy188I	TCNGA	8 cut(s)	10, 16, 22, 28, 40, 195, 828, 875
Hpy188III	TCNNGA	3 cut(s)	65, 272, 344
Hpy8I	GTNNAC	2 cut(s)	221, 710
HpyCH4III	ACNGT	3 cut(s)	406, 614, 794
HpyCH4IV	ACGT	1 cut(s)	105
HpyF10VI	GCNNNNNNNGC	3 cut(s)	51, 88, 172
HpyF3I	CTNAG	1 cut(s)	519
HpySE526I	ACGT	1 cut(s)	105
Hsp92II	CATG	5 cut(s)	61, 139, 623, 725, 741
Ksp22I	TGATCA	1 cut(s)	340
Kzo9I	GATC	2 cut(s)	131, 340
LmnI	GCTCC	1 cut(s)	327
Lsp1109I	GCAGC	3 cut(s)	41, 535, 559
LweI	GCATC	2 cut(s)	136, 184
MaeI	CTAG	3 cut(s)	272, 447, 906
MaeII	ACGT	1 cut(s)	105
MaeIII	GTNAC	1 cut(s)	487
MalI	GATC	2 cut(s)	133, 342
MbiI	CCGCTC	2 cut(s)	141, 531
MboI	GATC	2 cut(s)	131, 340
MboII	GAAGA	6 cut(s)	265, 287, 290, 295, 673, 711
MfeI	CAATTG	1 cut(s)	206
MhlI	GDGCHC	3 cut(s)	93, 105, 332
MlsI	TGGCCA	1 cut(s)	618
MluCI	AATT	6 cut(s)	32, 206, 260, 267, 674, 831
MluNI	TGGCCA	1 cut(s)	618
MlyI	GAGTC	6 cut(s)	14, 20, 26, 32, 341, 359
MmeI	TCCRAC	4 cut(s)	6, 63, 218, 755
MnlI	CCTC	3 cut(s)	22, 249, 466
Mox20I	TGGCCA	1 cut(s)	618
MscI	TGGCCA	1 cut(s)	618
MseI	TTAA	4 cut(s)	228, 609, 726, 930
MslI	CAYNNNNRTG	1 cut(s)	720
Msp20I	TGGCCA	1 cut(s)	618
MspI	CCGG	2 cut(s)	359, 847
MspR9I	CCNGG	2 cut(s)	360, 921
MunI	CAATTG	1 cut(s)	206
MvaI	CCWGG	1 cut(s)	921
MwoI	GCNNNNNNNGC	3 cut(s)	51, 88, 172
NciI	CCSGG	1 cut(s)	360
NdeII	GATC	2 cut(s)	131, 340
NlaIII	CATG	5 cut(s)	61, 139, 623, 725, 741
NspI	RCATGY	3 cut(s)	61, 725, 741
PceI	AGGCCT	1 cut(s)	451
PciI	ACATGT	1 cut(s)	737
PfeI	GAWTC	2 cut(s)	413, 505
PinAI	ACCGGT	1 cut(s)	846
PkrI	GCNGC	3 cut(s)	56, 525, 574
PleI	GAGTC	6 cut(s)	13, 19, 25, 31, 341, 359
PpsI	GAGTC	6 cut(s)	13, 19, 25, 31, 341, 359
PscI	ACATGT	1 cut(s)	737
PsiI	TTATAA	2 cut(s)	249, 900
Psp124BI	GAGCTC	1 cut(s)	332
Psp6I	CCWGG	1 cut(s)	919
PspGI	CCWGG	1 cut(s)	919
RsaI	GTAC	2 cut(s)	77, 711
RsaNI	GTAC	2 cut(s)	76, 710
RseI	CAYNNNNRTG	1 cut(s)	720
SacI	GAGCTC	1 cut(s)	332
SaqAI	TTAA	4 cut(s)	228, 609, 726, 930
SatI	GCNGC	3 cut(s)	55, 524, 573
Sau3AI	GATC	2 cut(s)	131, 340
SchI	GAGTC	6 cut(s)	14, 20, 26, 32, 341, 359
ScrFI	CCNGG	2 cut(s)	360, 921
SduI	GDGCHC	3 cut(s)	93, 105, 332
SetI	ASST	7 cut(s)	108, 312, 332, 340, 885, 918, 925
SfaNI	GCATC	2 cut(s)	136, 184
SfcI	CTRYAG	1 cut(s)	84
SmiMI	CAYNNNNRTG	1 cut(s)	720
SpeI	ACTAGT	1 cut(s)	905
Sse9I	AATT	6 cut(s)	32, 206, 260, 267, 674, 831
SseBI	AGGCCT	1 cut(s)	451
SsiI	CCGC	5 cut(s)	43, 141, 164, 440, 531
SspI	AATATT	1 cut(s)	355
SspMI	CTAG	3 cut(s)	272, 447, 906
SstI	GAGCTC	1 cut(s)	332
StuI	AGGCCT	1 cut(s)	451
StyD4I	CCNGG	2 cut(s)	358, 919
TaaI	ACNGT	3 cut(s)	406, 614, 794
TaiI	ACGT	1 cut(s)	108
TaqI	TCGA	3 cut(s)	130, 411, 925
TasI	AATT	6 cut(s)	32, 206, 260, 267, 674, 831
TatI	WGTACW	2 cut(s)	75, 709
TfiI	GAWTC	2 cut(s)	413, 505
Tru1I	TTAA	4 cut(s)	228, 609, 726, 930
Tru9I	TTAA	4 cut(s)	228, 609, 726, 930
TscAI	CASTG	1 cut(s)	799
TseI	GCWGC	3 cut(s)	54, 523, 572
TspDTI	ATGAA	4 cut(s)	203, 405, 669, 774
TspRI	CASTG	1 cut(s)	799
XapI	RAATTY	2 cut(s)	32, 267
XbaI	TCTAGA	1 cut(s)	271
XceI	RCATGY	3 cut(s)	61, 725, 741
XspI	CTAG	3 cut(s)	272, 447, 906

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.