Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0005665

Physical Location & Seq

Genomic Coordinates Reverse (-)

50285073 .. 50286959

Gene Structure 1887 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG281000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 528 bp

ATGGTGTACAACTTAAGCATGCTAGGTGAAAGCAAAAGCAGTAAAGAAGCAGAGAAGTCATCGATCATTGGGTTCATACCACATAGGATATGGCTGTCAAATGATCAGGAACATGAAAAGATGTATCCGATAATTGGGGATAGATACCGGTGCAAAGATTGTGTGGAGAAAATTGGCTTTGATCTTTGCAATGATTGTTATAATACTAGTTCCAAGCTTCCAGGTCGATTTAATCAGCAACATACAGCAGAACACCAGTTTGAGCTTATACGCAGCGACATTATTCGTGGGTCAGTTAAGGATAATGAGCGAGCGGGATTCCAGAGGAAGATGCCAGGAATAGAGAGCTTCCCCATGCTACCTCCACCAATAGTGAAAATGATGAGGATGATCAAGATGGATCTGAACCAAGTTTTCAGCGCGGTGGCATTTGTGGCTTGTTTTTTGTTTGGCTTTCAGACTCTGCCTTATGATAATGTCTTTTCCCAGGAATATATCATGGCAAAGGTTTCTATGGAAGACTACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009605 GO:0009607 GO:0009620 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043207 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0050832 GO:0050896 GO:0051603 GO:0051704 GO:0051707 GO:0061630 GO:0061659 GO:0070647 GO:0071596 GO:0071704 GO:0098542 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ZZ zf-C3HC4_3 zf-C3HC4_4 zf-RING_UBOX

Protein Analysis

175

Amino Acids

20.3

Weight (kDa)

6.42

Isoelectric Point (pI)

39.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005665)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G24800
fragaria_vesca	FvH4_2g19100 FvH4_2g19100 FvH4_2g19100 FvH4_6g51520
malus_domestica	MD10G1165000.v1.1
prunus_persica	Prupe.8G203400_v2.0.a1 Prupe.8G203400_v2.0.a1 Prupe.8G203400_v2.0.a1
pyrus_communis	pycom10g14220
rosa_chinensis	RchiOBHm_Chr6g0284931
rosa_laevigata	RLG00000012700 RLG00000012701
rosa_multiflora	Rmu_sc0004961.1_g000001 Rmu_sc0004961.1_g000002
rosa_roxburghii	Rroxscaffold_7G00183950 Rroxscaffold_7G00183960 Rroxscaffold_7G00184220
rosa_rugosa	Rorug06G0168600 Rorug06G0168700
rosa_samantha	Rh6AG280700 Rh6BG281000 Rh6BG281100 Rh6BG281200 Rh6BG281300 Rh6CG283000 Rh6DG276100
rosa_wichuraiana	Rw6G024120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	201
AccBSI	CCGCTC	1 cut(s)	314
AccII	CGCG	1 cut(s)	422
AciI	CCGC	2 cut(s)	314, 422
AclWI	GGATC	1 cut(s)	408
AfaI	GTAC	1 cut(s)	8
AfiI	CCNNNNNNNGG	1 cut(s)	134
AflII	CTTAAG	1 cut(s)	13
AgeI	ACCGGT	1 cut(s)	147
AhlI	ACTAGT	1 cut(s)	206
AjnI	CCWGG	3 cut(s)	220, 334, 486
AluBI	AGCT	3 cut(s)	217, 265, 348
AluI	AGCT	3 cut(s)	217, 265, 348
AlwI	GGATC	1 cut(s)	408
AlwNI	CAGNNNCTG	1 cut(s)	463
ApeKI	GCWGC	1 cut(s)	273
AsiGI	ACCGGT	1 cut(s)	147
AspLEI	GCGC	1 cut(s)	422
AsuHPI	GGTGA	1 cut(s)	38
BbvI	GCAGC	1 cut(s)	285
BccI	CCATC	1 cut(s)	391
BciT130I	CCWGG	3 cut(s)	222, 336, 488
BciVI	GTATCC	1 cut(s)	135
BclI	TGATCA	2 cut(s)	103, 390
BcuI	ACTAGT	1 cut(s)	206
BfaI	CTAG	3 cut(s)	23, 207, 526
BfrI	CTTAAG	1 cut(s)	13
BfuI	GTATCC	1 cut(s)	135
BisI	GCNGC	1 cut(s)	274
BlsI	GCNGC	1 cut(s)	275
Bme1390I	CCNGG	3 cut(s)	222, 336, 488
BmrFI	CCNGG	3 cut(s)	222, 336, 488
BmsI	GCATC	1 cut(s)	321
Bsa29I	ATCGAT	1 cut(s)	62
BsaJI	CCNNGG	1 cut(s)	486
BsaWI	WCCGGW	1 cut(s)	147
Bsc4I	CCNNNNNNNGG	1 cut(s)	134
Bse118I	RCCGGY	1 cut(s)	147
Bse1I	ACTGG	1 cut(s)	256
Bse3DI	GCAATG	1 cut(s)	196
BseBI	CCWGG	3 cut(s)	222, 336, 488
BseCI	ATCGAT	1 cut(s)	62
BseDI	CCNNGG	1 cut(s)	486
BseGI	GGATG	1 cut(s)	393
BseLI	CCNNNNNNNGG	1 cut(s)	134
BseMI	GCAATG	1 cut(s)	196
BseNI	ACTGG	1 cut(s)	256
BseXI	GCAGC	1 cut(s)	285
Bsh1236I	CGCG	1 cut(s)	422
BshTI	ACCGGT	1 cut(s)	147
BshVI	ATCGAT	1 cut(s)	62
BsiSI	CCGG	1 cut(s)	148
BslI	CCNNNNNNNGG	1 cut(s)	134
Bsp1407I	TGTACA	1 cut(s)	6
Bsp143I	GATC	5 cut(s)	63, 103, 181, 390, 400
BspACI	CCGC	2 cut(s)	314, 422
BspDI	ATCGAT	1 cut(s)	62
BspFNI	CGCG	1 cut(s)	422
BspPI	GGATC	1 cut(s)	408
BspTI	CTTAAG	1 cut(s)	13
BsrBI	CCGCTC	1 cut(s)	314
BsrDI	GCAATG	1 cut(s)	196
BsrFI	RCCGGY	1 cut(s)	147
BsrGI	TGTACA	1 cut(s)	6
BsrI	ACTGG	1 cut(s)	256
BssAI	RCCGGY	1 cut(s)	147
BssECI	CCNNGG	1 cut(s)	486
BssMI	GATC	5 cut(s)	63, 103, 181, 390, 400
Bst2UI	CCWGG	3 cut(s)	222, 336, 488
BstAFI	CTTAAG	1 cut(s)	13
BstAUI	TGTACA	1 cut(s)	6
BstC8I	GCNNGC	2 cut(s)	20, 312
BstF5I	GGATG	1 cut(s)	393
BstFNI	CGCG	1 cut(s)	422
BstHHI	GCGC	1 cut(s)	422
BstKTI	GATC	5 cut(s)	66, 106, 184, 393, 403
BstMBI	GATC	5 cut(s)	63, 103, 181, 390, 400
BstMWI	GCNNNNNNNGC	1 cut(s)	434
BstNI	CCWGG	3 cut(s)	222, 336, 488
BstNSI	RCATGY	1 cut(s)	22
BstSCI	CCNGG	3 cut(s)	220, 334, 486
BstUI	CGCG	1 cut(s)	422
BstV1I	GCAGC	1 cut(s)	285
BstX2I	RGATCY	1 cut(s)	400
BstYI	RGATCY	1 cut(s)	400
Bsu15I	ATCGAT	1 cut(s)	62
BsuI	GTATCC	1 cut(s)	135
BsuTUI	ATCGAT	1 cut(s)	62
BtsCI	GGATG	1 cut(s)	393
Cac8I	GCNNGC	2 cut(s)	20, 312
CaiI	CAGNNNCTG	1 cut(s)	463
CfoI	GCGC	1 cut(s)	422
Cfr10I	RCCGGY	1 cut(s)	147
ClaI	ATCGAT	1 cut(s)	62
Csp6I	GTAC	1 cut(s)	7
CspAI	ACCGGT	1 cut(s)	147
CviAII	CATG	4 cut(s)	19, 113, 355, 499
CviJI	RGCY	7 cut(s)	94, 177, 217, 265, 348, 437, 453
CviKI_1	RGCY	7 cut(s)	94, 177, 217, 265, 348, 437, 453
CviQI	GTAC	1 cut(s)	7
DpnI	GATC	5 cut(s)	65, 105, 183, 392, 402
DpnII	GATC	5 cut(s)	63, 103, 181, 390, 400
EcoRII	CCWGG	3 cut(s)	220, 334, 486
FaeI	CATG	4 cut(s)	22, 116, 358, 502
FatI	CATG	4 cut(s)	18, 112, 354, 498
FauI	CCCGC	1 cut(s)	307
FbaI	TGATCA	2 cut(s)	103, 390
Fnu4HI	GCNGC	1 cut(s)	274
FokI	GGATG	1 cut(s)	400
Fsp4HI	GCNGC	1 cut(s)	274
FspBI	CTAG	3 cut(s)	23, 207, 526
GlaI	GCGC	1 cut(s)	421
GluI	GCNGC	1 cut(s)	274
HapII	CCGG	1 cut(s)	148
HhaI	GCGC	1 cut(s)	422
Hin1II	CATG	4 cut(s)	22, 116, 358, 502
Hin6I	GCGC	1 cut(s)	420
HinP1I	GCGC	1 cut(s)	420
HindIII	AAGCTT	1 cut(s)	215
HinfI	GANTC	2 cut(s)	318, 460
HpaII	CCGG	1 cut(s)	148
HphI	GGTGA	1 cut(s)	38
Hpy166II	GTNNAC	1 cut(s)	7
Hpy188I	TCNGA	3 cut(s)	129, 405, 459
Hpy188III	TCNNGA	3 cut(s)	107, 322, 394
Hpy8I	GTNNAC	1 cut(s)	7
HpyCH4V	TGCA	2 cut(s)	153, 189
HpyF10VI	GCNNNNNNNGC	1 cut(s)	434
Hsp92II	CATG	4 cut(s)	22, 116, 358, 502
HspAI	GCGC	1 cut(s)	420
Ksp22I	TGATCA	2 cut(s)	103, 390
Kzo9I	GATC	5 cut(s)	63, 103, 181, 390, 400
Lsp1109I	GCAGC	1 cut(s)	285
LweI	GCATC	1 cut(s)	321
MaeI	CTAG	3 cut(s)	23, 207, 526
MalI	GATC	5 cut(s)	65, 105, 183, 392, 402
MbiI	CCGCTC	1 cut(s)	314
MboI	GATC	5 cut(s)	63, 103, 181, 390, 400
MboII	GAAGA	1 cut(s)	340
MflI	RGATCY	1 cut(s)	400
MluCI	AATT	2 cut(s)	132, 171
MlyI	GAGTC	1 cut(s)	454
MnlI	CCTC	3 cut(s)	318, 372, 378
MseI	TTAA	3 cut(s)	14, 231, 297
MspCI	CTTAAG	1 cut(s)	13
MspI	CCGG	1 cut(s)	148
MspR9I	CCNGG	3 cut(s)	222, 336, 488
MvaI	CCWGG	3 cut(s)	222, 336, 488
MvnI	CGCG	1 cut(s)	422
MwoI	GCNNNNNNNGC	1 cut(s)	434
NdeII	GATC	5 cut(s)	63, 103, 181, 390, 400
NlaIII	CATG	4 cut(s)	22, 116, 358, 502
NspI	RCATGY	1 cut(s)	22
PaeI	GCATGC	1 cut(s)	22
PfeI	GAWTC	1 cut(s)	318
PinAI	ACCGGT	1 cut(s)	147
PkrI	GCNGC	1 cut(s)	275
PleI	GAGTC	1 cut(s)	454
PpsI	GAGTC	1 cut(s)	454
PsiI	TTATAA	1 cut(s)	201
Psp6I	CCWGG	3 cut(s)	220, 334, 486
PspGI	CCWGG	3 cut(s)	220, 334, 486
PstNI	CAGNNNCTG	1 cut(s)	463
PsuI	RGATCY	1 cut(s)	400
RsaI	GTAC	1 cut(s)	8
RsaNI	GTAC	1 cut(s)	7
SaqAI	TTAA	3 cut(s)	14, 231, 297
SatI	GCNGC	1 cut(s)	274
Sau3AI	GATC	5 cut(s)	63, 103, 181, 390, 400
SchI	GAGTC	1 cut(s)	454
ScrFI	CCNGG	3 cut(s)	222, 336, 488
SetI	ASST	7 cut(s)	28, 219, 226, 267, 350, 364, 510
SfaNI	GCATC	1 cut(s)	321
SmlI	CTYRAG	1 cut(s)	13
SmoI	CTYRAG	1 cut(s)	13
SpeI	ACTAGT	1 cut(s)	206
SphI	GCATGC	1 cut(s)	22
Sse9I	AATT	2 cut(s)	132, 171
SsiI	CCGC	2 cut(s)	314, 422
SspMI	CTAG	3 cut(s)	23, 207, 526
StyD4I	CCNGG	3 cut(s)	220, 334, 486
TaqI	TCGA	2 cut(s)	62, 226
TasI	AATT	2 cut(s)	132, 171
TatI	WGTACW	1 cut(s)	6
TfiI	GAWTC	1 cut(s)	318
Tru1I	TTAA	3 cut(s)	14, 231, 297
Tru9I	TTAA	3 cut(s)	14, 231, 297
TseI	GCWGC	1 cut(s)	273
TspDTI	ATGAA	2 cut(s)	64, 129
Vha464I	CTTAAG	1 cut(s)	13
XceI	RCATGY	1 cut(s)	22
XcmI	CCANNNNNNNNNTGG	1 cut(s)	87
XspI	CTAG	3 cut(s)	23, 207, 526

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.