E3 ubiquitin-protein ligase
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G24800 |
| fragaria_vesca | FvH4_2g19100 FvH4_2g19100 FvH4_2g19100 FvH4_6g51520 |
| malus_domestica | MD10G1165000.v1.1 |
| prunus_persica | Prupe.8G203400_v2.0.a1 Prupe.8G203400_v2.0.a1 Prupe.8G203400_v2.0.a1 |
| pyrus_communis | pycom10g14220 |
| rosa_chinensis | RchiOBHm_Chr6g0284931 |
| rosa_laevigata | RLG00000012700 RLG00000012701 |
| rosa_multiflora | Rmu_sc0004961.1_g000001 Rmu_sc0004961.1_g000002 |
| rosa_roxburghii | Rroxscaffold_7G00183950 Rroxscaffold_7G00183960 Rroxscaffold_7G00184220 |
| rosa_rugosa | Rorug06G0168600 Rorug06G0168700 |
| rosa_samantha | Rh6AG280700 Rh6BG281000 Rh6BG281100 Rh6BG281200 Rh6BG281300 Rh6CG283000 Rh6DG276100 |
| rosa_wichuraiana | Rw6G024120 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 1 cut(s) | 210 |
| AclWI | GGATC | 1 cut(s) | 287 |
| AcuI | CTGAAG | 1 cut(s) | 98 |
| AfaI | GTAC | 2 cut(s) | 171, 200 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 219 |
| AflIII | ACRYGT | 1 cut(s) | 35 |
| AgsI | TTSAA | 2 cut(s) | 272, 284 |
| AjnI | CCWGG | 1 cut(s) | 201 |
| AluBI | AGCT | 5 cut(s) | 73, 88, 104, 162, 287 |
| AluI | AGCT | 5 cut(s) | 73, 88, 104, 162, 287 |
| Alw21I | GWGCWC | 1 cut(s) | 45 |
| AlwI | GGATC | 1 cut(s) | 287 |
| ApeKI | GCWGC | 1 cut(s) | 159 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 147 |
| AsuNHI | GCTAGC | 1 cut(s) | 104 |
| Bbv12I | GWGCWC | 1 cut(s) | 45 |
| BbvI | GCAGC | 1 cut(s) | 171 |
| BceAI | ACGGC | 1 cut(s) | 197 |
| BciT130I | CCWGG | 1 cut(s) | 203 |
| BfaI | CTAG | 2 cut(s) | 89, 105 |
| BfmI | CTRYAG | 1 cut(s) | 157 |
| BisI | GCNGC | 1 cut(s) | 160 |
| BlsI | GCNGC | 1 cut(s) | 161 |
| Bme1390I | CCNGG | 1 cut(s) | 203 |
| BmrFI | CCNGG | 1 cut(s) | 203 |
| BmtI | GCTAGC | 1 cut(s) | 108 |
| BpuEI | CTTGAG | 1 cut(s) | 150 |
| BsaWI | WCCGGW | 1 cut(s) | 219 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 219 |
| Bse1I | ACTGG | 1 cut(s) | 301 |
| BseBI | CCWGG | 1 cut(s) | 203 |
| BseGI | GGATG | 1 cut(s) | 249 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 219 |
| BseNI | ACTGG | 1 cut(s) | 301 |
| BseXI | GCAGC | 1 cut(s) | 171 |
| BsiHKAI | GWGCWC | 1 cut(s) | 45 |
| BsiSI | CCGG | 1 cut(s) | 220 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 219 |
| Bsp1286I | GDGCHC | 1 cut(s) | 45 |
| Bsp143I | GATC | 1 cut(s) | 292 |
| BspACI | CCGC | 1 cut(s) | 210 |
| BspMAI | CTGCAG | 1 cut(s) | 161 |
| BspOI | GCTAGC | 1 cut(s) | 108 |
| BspPI | GGATC | 1 cut(s) | 287 |
| BsrI | ACTGG | 1 cut(s) | 301 |
| BssMI | GATC | 1 cut(s) | 292 |
| Bst2UI | CCWGG | 1 cut(s) | 203 |
| Bst4CI | ACNGT | 1 cut(s) | 174 |
| BstC8I | GCNNGC | 1 cut(s) | 106 |
| BstF5I | GGATG | 1 cut(s) | 249 |
| BstKTI | GATC | 1 cut(s) | 295 |
| BstMBI | GATC | 1 cut(s) | 292 |
| BstNI | CCWGG | 1 cut(s) | 203 |
| BstSCI | CCNGG | 1 cut(s) | 201 |
| BstSFI | CTRYAG | 1 cut(s) | 157 |
| BstV1I | GCAGC | 1 cut(s) | 171 |
| BtsCI | GGATG | 1 cut(s) | 249 |
| BtsIMutI | CAGTG | 1 cut(s) | 57 |
| Cac8I | GCNNGC | 1 cut(s) | 106 |
| Csp6I | GTAC | 2 cut(s) | 170, 199 |
| CviJI | RGCY | 6 cut(s) | 73, 88, 104, 162, 280, 287 |
| CviKI_1 | RGCY | 6 cut(s) | 73, 88, 104, 162, 280, 287 |
| CviQI | GTAC | 2 cut(s) | 170, 199 |
| DpnI | GATC | 1 cut(s) | 294 |
| DpnII | GATC | 1 cut(s) | 292 |
| EciI | GGCGGA | 1 cut(s) | 199 |
| Eco57I | CTGAAG | 1 cut(s) | 98 |
| EcoRII | CCWGG | 1 cut(s) | 201 |
| Fnu4HI | GCNGC | 1 cut(s) | 160 |
| FokI | GGATG | 1 cut(s) | 256 |
| Fsp4HI | GCNGC | 1 cut(s) | 160 |
| FspBI | CTAG | 2 cut(s) | 89, 105 |
| GluI | GCNGC | 1 cut(s) | 160 |
| HapII | CCGG | 1 cut(s) | 220 |
| HindIII | AAGCTT | 1 cut(s) | 71 |
| HinfI | GANTC | 3 cut(s) | 6, 153, 206 |
| HpaII | CCGG | 1 cut(s) | 220 |
| Hpy188I | TCNGA | 3 cut(s) | 32, 78, 190 |
| HpyAV | CCTTC | 1 cut(s) | 25 |
| HpyCH4III | ACNGT | 1 cut(s) | 174 |
| HpyCH4IV | ACGT | 1 cut(s) | 35 |
| HpyCH4V | TGCA | 1 cut(s) | 159 |
| HpySE526I | ACGT | 1 cut(s) | 35 |
| Kzo9I | GATC | 1 cut(s) | 292 |
| LpnPI | CCDG | 4 cut(s) | 116, 188, 215, 233 |
| Lsp1109I | GCAGC | 1 cut(s) | 171 |
| MaeI | CTAG | 2 cut(s) | 89, 105 |
| MaeII | ACGT | 1 cut(s) | 35 |
| MaeIII | GTNAC | 1 cut(s) | 53 |
| MalI | GATC | 1 cut(s) | 294 |
| MboI | GATC | 1 cut(s) | 292 |
| MboII | GAAGA | 3 cut(s) | 10, 91, 260 |
| MhlI | GDGCHC | 1 cut(s) | 45 |
| MluCI | AATT | 2 cut(s) | 49, 264 |
| MnlI | CCTC | 2 cut(s) | 88, 234 |
| MroXI | GAANNNNTTC | 1 cut(s) | 147 |
| MseI | TTAA | 2 cut(s) | 135, 263 |
| MspI | CCGG | 1 cut(s) | 220 |
| MspR9I | CCNGG | 1 cut(s) | 203 |
| MvaI | CCWGG | 1 cut(s) | 203 |
| NdeII | GATC | 1 cut(s) | 292 |
| NheI | GCTAGC | 1 cut(s) | 104 |
| PdmI | GAANNNNTTC | 1 cut(s) | 147 |
| PfeI | GAWTC | 3 cut(s) | 6, 153, 206 |
| PkrI | GCNGC | 1 cut(s) | 161 |
| Psp6I | CCWGG | 1 cut(s) | 201 |
| PspGI | CCWGG | 1 cut(s) | 201 |
| PstI | CTGCAG | 1 cut(s) | 161 |
| RsaI | GTAC | 2 cut(s) | 171, 200 |
| RsaNI | GTAC | 2 cut(s) | 170, 199 |
| SaqAI | TTAA | 2 cut(s) | 135, 263 |
| SatI | GCNGC | 1 cut(s) | 160 |
| Sau3AI | GATC | 1 cut(s) | 292 |
| ScrFI | CCNGG | 1 cut(s) | 203 |
| SduI | GDGCHC | 1 cut(s) | 45 |
| SetI | ASST | 9 cut(s) | 38, 75, 90, 99, 106, 141, 164, 204, 289 |
| SfcI | CTRYAG | 1 cut(s) | 157 |
| SmlI | CTYRAG | 1 cut(s) | 165 |
| SmoI | CTYRAG | 1 cut(s) | 165 |
| Sse9I | AATT | 2 cut(s) | 49, 264 |
| SsiI | CCGC | 1 cut(s) | 210 |
| SspMI | CTAG | 2 cut(s) | 89, 105 |
| StyD4I | CCNGG | 1 cut(s) | 201 |
| TaaI | ACNGT | 1 cut(s) | 174 |
| TaiI | ACGT | 1 cut(s) | 38 |
| TaqI | TCGA | 1 cut(s) | 151 |
| TasI | AATT | 2 cut(s) | 49, 264 |
| TatI | WGTACW | 1 cut(s) | 169 |
| TfiI | GAWTC | 3 cut(s) | 6, 153, 206 |
| Tru1I | TTAA | 2 cut(s) | 135, 263 |
| Tru9I | TTAA | 2 cut(s) | 135, 263 |
| TscAI | CASTG | 1 cut(s) | 64 |
| TseI | GCWGC | 1 cut(s) | 159 |
| TspDTI | ATGAA | 2 cut(s) | 10, 98 |
| TspRI | CASTG | 1 cut(s) | 64 |
| XmnI | GAANNNNTTC | 1 cut(s) | 147 |
| XspI | CTAG | 2 cut(s) | 89, 105 |