Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0005665

Physical Location & Seq

Genomic Coordinates Reverse (-)

46082512 .. 46085881

Gene Structure 3370 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG283000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 801 bp

ATGAGTGGTGAAAAGCAATCTCATTGCCCGCTTTGTAGGCATCCCTATAATCACTTTCCGACTATATGTCAATTGCTTCATTGTTTACTGCTCAACTCGTATCCTGTTGCTTATAAGAAGAGGGAATTGCAAATTCTAGAAGAAGAGAAGAAAACTGGCTACTTCTCACCACAGCTTGATGTTCAGGCTTGGAGCTCACAAGCTAATCAAGACTCAAATATTCCGGGCGACTCTGTAAGCAAAGAGTTGAGTGCAAGTATGCAGGAAACAGTTTTCGATTCATATAATCTAAACAATGCCATAGCGGTTTCTAGGCCTGCTGATGGTGGAGACTATGAGGGAATGGAGAATGTTACTGAGCAAGTAAAGTATCCCCTGTTATCTCAGCAGCAGAGCGGAAGTCCCAAGCAGATTTCAGTTGCAGATGTGCTTTGTGCTGCTTGCAAACAACTGCTGTTTCGTCCTGTGGTTCTTAACTGTGGCCATGTATATTGTGAAAGTTGTATCGTCAAACAAGATGAAGAGAAGATTAGATGTCAAGTTTGTCAAAGTTTCCATCCAGCCAGATATCCAAAAGTTTGTTTGGATCTGCAAAACTTTTTGATAGAACAGTTTCCTAAAGAACTTGCACATAGAAGAGATGGTGTACAGCGTAACCATGTTAATCCAACTACATGTGAAGGCAAAAGCAGTAAAGAAGCAGAGAAGTCATCATCGGGTTCATATCACAGAGGAGTTGGCTGTGATTATTGTGGGGTACGTATACTTCTTTACTTCTTTCTCTGCACATTGATGCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009605 GO:0009607 GO:0009620 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043207 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0050832 GO:0050896 GO:0051603 GO:0051704 GO:0051707 GO:0061630 GO:0061659 GO:0070647 GO:0071596 GO:0071704 GO:0098542 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ZZ zf-C3HC4_3 zf-C3HC4_4 zf-RING_UBOX

Protein Analysis

266

Amino Acids

30.0

Weight (kDa)

6.5

Isoelectric Point (pI)

59.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_UBOX	PF13445	145 - 179	4.9e-07	RING-type zinc-finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0005665)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G24800
fragaria_vesca	FvH4_2g19100 FvH4_2g19100 FvH4_2g19100 FvH4_6g51520
malus_domestica	MD10G1165000.v1.1
prunus_persica	Prupe.8G203400_v2.0.a1 Prupe.8G203400_v2.0.a1 Prupe.8G203400_v2.0.a1
pyrus_communis	pycom10g14220
rosa_chinensis	RchiOBHm_Chr6g0284931
rosa_laevigata	RLG00000012700 RLG00000012701
rosa_multiflora	Rmu_sc0004961.1_g000001 Rmu_sc0004961.1_g000002
rosa_roxburghii	Rroxscaffold_7G00183950 Rroxscaffold_7G00183960 Rroxscaffold_7G00184220
rosa_rugosa	Rorug06G0168600 Rorug06G0168700
rosa_samantha	Rh6AG280700 Rh6BG281000 Rh6BG281100 Rh6BG281200 Rh6BG281300 Rh6CG283000 Rh6DG276100
rosa_wichuraiana	Rw6G024120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	114
AccBSI	CCGCTC	1 cut(s)	396
AccI	GTMKAC	1 cut(s)	763
AciI	CCGC	3 cut(s)	29, 305, 396
AclWI	GGATC	1 cut(s)	594
AcoI	YGGCCR	1 cut(s)	481
AcsI	RAATTY	1 cut(s)	132
AfaI	GTAC	2 cut(s)	648, 759
AfiI	CCNNNNNNNGG	1 cut(s)	323
AflIII	ACRYGT	1 cut(s)	674
AhdI	GACNNNNNGTC	1 cut(s)	66
AluBI	AGCT	3 cut(s)	175, 195, 203
AluI	AGCT	3 cut(s)	175, 195, 203
Alw21I	GWGCWC	1 cut(s)	197
Alw26I	GTCTC	1 cut(s)	324
AlwI	GGATC	1 cut(s)	594
AoxI	GGCC	2 cut(s)	314, 481
ApeKI	GCWGC	2 cut(s)	388, 437
ApoI	RAATTY	1 cut(s)	132
Asp700I	GAANNNNTTC	1 cut(s)	612
AsuC2I	CCSGG	1 cut(s)	225
AsuHPI	GGTGA	2 cut(s)	20, 159
BalI	TGGCCA	1 cut(s)	483
BanII	GRGCYC	1 cut(s)	197
BarI	GAAGNNNNNNTAC	2 cut(s)	750, 782
Bbv12I	GWGCWC	1 cut(s)	197
BbvI	GCAGC	2 cut(s)	400, 424
BccI	CCATC	3 cut(s)	317, 564, 635
BciVI	GTATCC	2 cut(s)	111, 381
BcnI	CCSGG	1 cut(s)	225
BcoDI	GTCTC	1 cut(s)	324
BfaI	CTAG	2 cut(s)	137, 312
BfuI	GTATCC	2 cut(s)	111, 381
BisI	GCNGC	2 cut(s)	389, 438
BlsI	GCNGC	2 cut(s)	390, 439
Bme1390I	CCNGG	1 cut(s)	225
BmeRI	GACNNNNNGTC	1 cut(s)	66
BmrFI	CCNGG	1 cut(s)	225
BmsI	GCATC	2 cut(s)	49, 783
BpuMI	CCSGG	1 cut(s)	225
BsaAI	YACGTR	1 cut(s)	761
Bsc4I	CCNNNNNNNGG	1 cut(s)	323
Bse1I	ACTGG	1 cut(s)	160
Bse3DI	GCAATG	1 cut(s)	22
BseGI	GGATG	2 cut(s)	40, 556
BseLI	CCNNNNNNNGG	1 cut(s)	323
BseMI	GCAATG	1 cut(s)	22
BseMII	CTCAG	2 cut(s)	348, 398
BseNI	ACTGG	1 cut(s)	160
BseRI	GAGGAG	1 cut(s)	747
BseXI	GCAGC	2 cut(s)	400, 424
BsgI	GTGCAG	1 cut(s)	769
BshFI	GGCC	2 cut(s)	316, 483
BsiHKAI	GWGCWC	1 cut(s)	197
BsiSI	CCGG	1 cut(s)	224
BslFI	GGGAC	1 cut(s)	387
BslI	CCNNNNNNNGG	1 cut(s)	323
BsmAI	GTCTC	1 cut(s)	324
BsmFI	GGGAC	1 cut(s)	387
BsnI	GGCC	2 cut(s)	316, 483
Bsp1286I	GDGCHC	1 cut(s)	197
Bsp1407I	TGTACA	1 cut(s)	646
Bsp143I	GATC	1 cut(s)	586
BspACI	CCGC	3 cut(s)	29, 305, 396
BspANI	GGCC	2 cut(s)	316, 483
BspCNI	CTCAG	2 cut(s)	349, 397
BspPI	GGATC	1 cut(s)	594
BsrBI	CCGCTC	1 cut(s)	396
BsrDI	GCAATG	1 cut(s)	22
BsrGI	TGTACA	1 cut(s)	646
BsrI	ACTGG	1 cut(s)	160
BssMI	GATC	1 cut(s)	586
BssNAI	GTATAC	1 cut(s)	764
Bst1107I	GTATAC	1 cut(s)	764
Bst4CI	ACNGT	3 cut(s)	271, 479, 612
Bst6I	CTCTTC	4 cut(s)	113, 138, 516, 631
BstAUI	TGTACA	1 cut(s)	646
BstBAI	YACGTR	1 cut(s)	761
BstC8I	GCNNGC	3 cut(s)	29, 318, 442
BstDEI	CTNAG	2 cut(s)	357, 384
BstF5I	GGATG	2 cut(s)	40, 556
BstKTI	GATC	1 cut(s)	589
BstMAI	GTCTC	1 cut(s)	324
BstMBI	GATC	1 cut(s)	586
BstMWI	GCNNNNNNNGC	1 cut(s)	37
BstNSI	RCATGY	1 cut(s)	678
BstSCI	CCNGG	1 cut(s)	223
BstSNI	TACGTA	1 cut(s)	761
BstV1I	GCAGC	2 cut(s)	400, 424
BstX2I	RGATCY	1 cut(s)	586
BstYI	RGATCY	1 cut(s)	586
BstZ17I	GTATAC	1 cut(s)	764
BsuI	GTATCC	2 cut(s)	111, 381
BsuRI	GGCC	2 cut(s)	316, 483
BtsCI	GGATG	2 cut(s)	40, 556
Cac8I	GCNNGC	3 cut(s)	29, 318, 442
Csp6I	GTAC	2 cut(s)	647, 758
CviAII	CATG	3 cut(s)	485, 659, 675
CviJI	RGCY	9 cut(s)	159, 175, 188, 195, 203, 316, 483, 563, 741
CviKI_1	RGCY	9 cut(s)	159, 175, 188, 195, 203, 316, 483, 563, 741
CviQI	GTAC	2 cut(s)	647, 758
DdeI	CTNAG	2 cut(s)	357, 384
DpnI	GATC	1 cut(s)	588
DpnII	GATC	1 cut(s)	586
DriI	GACNNNNNGTC	1 cut(s)	66
EaeI	YGGCCR	1 cut(s)	481
Eam1104I	CTCTTC	4 cut(s)	113, 138, 516, 631
Eam1105I	GACNNNNNGTC	1 cut(s)	66
EarI	CTCTTC	4 cut(s)	113, 138, 516, 631
Ecl136II	GAGCTC	1 cut(s)	195
Eco105I	TACGTA	1 cut(s)	761
Eco147I	AGGCCT	1 cut(s)	316
Eco24I	GRGCYC	1 cut(s)	197
Eco32I	GATATC	1 cut(s)	569
Eco53kI	GAGCTC	1 cut(s)	195
EcoICRI	GAGCTC	1 cut(s)	195
EcoRV	GATATC	1 cut(s)	569
EcoT38I	GRGCYC	1 cut(s)	197
FaeI	CATG	3 cut(s)	488, 662, 678
FaqI	GGGAC	1 cut(s)	387
FatI	CATG	3 cut(s)	484, 658, 674
FauI	CCCGC	1 cut(s)	36
FblI	GTMKAC	1 cut(s)	763
Fnu4HI	GCNGC	2 cut(s)	389, 438
FokI	GGATG	2 cut(s)	27, 543
FriOI	GRGCYC	1 cut(s)	197
Fsp4HI	GCNGC	2 cut(s)	389, 438
FspBI	CTAG	2 cut(s)	137, 312
GluI	GCNGC	2 cut(s)	389, 438
HaeIII	GGCC	2 cut(s)	316, 483
HapII	CCGG	1 cut(s)	224
Hin1II	CATG	3 cut(s)	488, 662, 678
HinfI	GANTC	3 cut(s)	212, 230, 278
HpaII	CCGG	1 cut(s)	224
HphI	GGTGA	2 cut(s)	20, 159
Hpy166II	GTNNAC	3 cut(s)	86, 647, 764
Hpy188I	TCNGA	1 cut(s)	60
Hpy188III	TCNNGA	2 cut(s)	137, 209
Hpy8I	GTNNAC	3 cut(s)	86, 647, 764
HpyAV	CCTTC	1 cut(s)	674
HpyCH4III	ACNGT	3 cut(s)	271, 479, 612
HpyCH4IV	ACGT	1 cut(s)	760
HpyCH4V	TGCA	8 cut(s)	130, 254, 262, 422, 444, 592, 629, 786
HpyF10VI	GCNNNNNNNGC	1 cut(s)	37
HpyF3I	CTNAG	2 cut(s)	357, 384
HpySE526I	ACGT	1 cut(s)	760
Hsp92II	CATG	3 cut(s)	488, 662, 678
Kzo9I	GATC	1 cut(s)	586
LmnI	GCTCC	1 cut(s)	192
Lsp1109I	GCAGC	2 cut(s)	400, 424
LweI	GCATC	2 cut(s)	49, 783
MaeI	CTAG	2 cut(s)	137, 312
MaeII	ACGT	1 cut(s)	760
MaeIII	GTNAC	2 cut(s)	352, 653
MalI	GATC	1 cut(s)	588
MbiI	CCGCTC	1 cut(s)	396
MboI	GATC	1 cut(s)	586
MboII	GAAGA	7 cut(s)	130, 152, 155, 160, 533, 538, 648
MfeI	CAATTG	1 cut(s)	71
MflI	RGATCY	1 cut(s)	586
MhlI	GDGCHC	1 cut(s)	197
MlsI	TGGCCA	1 cut(s)	483
MluCI	AATT	3 cut(s)	71, 125, 132
MluNI	TGGCCA	1 cut(s)	483
MlyI	GAGTC	2 cut(s)	206, 224
MmeI	TCCRAC	2 cut(s)	83, 692
MnlI	CCTC	3 cut(s)	114, 331, 725
Mox20I	TGGCCA	1 cut(s)	483
MroXI	GAANNNNTTC	1 cut(s)	612
MscI	TGGCCA	1 cut(s)	483
MseI	TTAA	2 cut(s)	474, 663
MslI	CAYNNNNRTG	1 cut(s)	791
Msp20I	TGGCCA	1 cut(s)	483
MspI	CCGG	1 cut(s)	224
MspR9I	CCNGG	1 cut(s)	225
MunI	CAATTG	1 cut(s)	71
MwoI	GCNNNNNNNGC	1 cut(s)	37
NciI	CCSGG	1 cut(s)	225
NdeII	GATC	1 cut(s)	586
NlaIII	CATG	3 cut(s)	488, 662, 678
NspI	RCATGY	1 cut(s)	678
PceI	AGGCCT	1 cut(s)	316
PciI	ACATGT	1 cut(s)	674
PdmI	GAANNNNTTC	1 cut(s)	612
PfeI	GAWTC	1 cut(s)	278
PkrI	GCNGC	2 cut(s)	390, 439
PleI	GAGTC	2 cut(s)	206, 224
PpsI	GAGTC	2 cut(s)	206, 224
Ppu21I	YACGTR	1 cut(s)	761
PscI	ACATGT	1 cut(s)	674
PsiI	TTATAA	1 cut(s)	114
Psp124BI	GAGCTC	1 cut(s)	197
PsuI	RGATCY	1 cut(s)	586
RsaI	GTAC	2 cut(s)	648, 759
RsaNI	GTAC	2 cut(s)	647, 758
RseI	CAYNNNNRTG	1 cut(s)	791
SacI	GAGCTC	1 cut(s)	197
SaqAI	TTAA	2 cut(s)	474, 663
SatI	GCNGC	2 cut(s)	389, 438
Sau3AI	GATC	1 cut(s)	586
SchI	GAGTC	2 cut(s)	206, 224
ScrFI	CCNGG	1 cut(s)	225
SduI	GDGCHC	1 cut(s)	197
SetI	ASST	4 cut(s)	177, 197, 205, 763
SfaNI	GCATC	2 cut(s)	49, 783
SmiMI	CAYNNNNRTG	1 cut(s)	791
SnaBI	TACGTA	1 cut(s)	761
Sse9I	AATT	3 cut(s)	71, 125, 132
SseBI	AGGCCT	1 cut(s)	316
SsiI	CCGC	3 cut(s)	29, 305, 396
SspI	AATATT	1 cut(s)	220
SspMI	CTAG	2 cut(s)	137, 312
SstI	GAGCTC	1 cut(s)	197
StuI	AGGCCT	1 cut(s)	316
StyD4I	CCNGG	1 cut(s)	223
TaaI	ACNGT	3 cut(s)	271, 479, 612
TaiI	ACGT	1 cut(s)	763
TaqI	TCGA	1 cut(s)	276
TasI	AATT	3 cut(s)	71, 125, 132
TatI	WGTACW	1 cut(s)	646
TfiI	GAWTC	1 cut(s)	278
Tru1I	TTAA	2 cut(s)	474, 663
Tru9I	TTAA	2 cut(s)	474, 663
TseI	GCWGC	2 cut(s)	388, 437
TspDTI	ATGAA	4 cut(s)	68, 270, 534, 711
XapI	RAATTY	1 cut(s)	132
XbaI	TCTAGA	1 cut(s)	136
XceI	RCATGY	1 cut(s)	678
XmiI	GTMKAC	1 cut(s)	763
XmnI	GAANNNNTTC	1 cut(s)	612
XspI	CTAG	2 cut(s)	137, 312

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.