Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004961.1

Orthogroup ID

OG0005665

Physical Location & Seq

Genomic Coordinates Reverse (-)

3044 .. 3987

Gene Structure 944 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004961.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 546 bp

atggagtcggagtcggagtcggagtcggaggaattctccgaccgcttcgtctgctgcatgtgtctggaacttctgtacaagcctatagtgctctcctgtgggcacgtttcgtgtttctggtgcgtgcatcgatccatgagcggtgaaaagcaatctcattgcccgctttgtcggcatccctataatcactttccgactatatgtcaattgcttcattgtttactgctcaactcgtatcctcttgcttataagaagagggaattgcaaattctagaagaagagaagaaaactggctacttctcaccacagcttgatgttcaggcttggagctcacaagctaatcaagactcaaatattccggccgactctgtaagcaaagagttgagtgcaaatatgcaggaaatagttttcgattcatataatctaagcaatggcacagcggtttctaggcctactgatggtggagactatgagggaatggagaatgttactgacaaaacaaaaaaaggaaaaggaaaaaaaaaaacgtgtgtcctcaactcgtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009605 GO:0009607 GO:0009620 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043207 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0050832 GO:0050896 GO:0051603 GO:0051704 GO:0051707 GO:0061630 GO:0061659 GO:0070647 GO:0071596 GO:0071704 GO:0098542 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ZZ zf-C3HC4_3 zf-C3HC4_4 zf-RING_UBOX

Protein Analysis

181

Amino Acids

20.46

Weight (kDa)

5.68

Isoelectric Point (pI)

56.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005665)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G24800
fragaria_vesca	FvH4_2g19100 FvH4_2g19100 FvH4_2g19100 FvH4_6g51520
malus_domestica	MD10G1165000.v1.1
prunus_persica	Prupe.8G203400_v2.0.a1 Prupe.8G203400_v2.0.a1 Prupe.8G203400_v2.0.a1
pyrus_communis	pycom10g14220
rosa_chinensis	RchiOBHm_Chr6g0284931
rosa_laevigata	RLG00000012700 RLG00000012701
rosa_multiflora	Rmu_sc0004961.1_g000001 Rmu_sc0004961.1_g000002
rosa_roxburghii	Rroxscaffold_7G00183950 Rroxscaffold_7G00183960 Rroxscaffold_7G00184220
rosa_rugosa	Rorug06G0168600 Rorug06G0168700
rosa_samantha	Rh6AG280700 Rh6BG281000 Rh6BG281100 Rh6BG281200 Rh6BG281300 Rh6CG283000 Rh6DG276100
rosa_wichuraiana	Rw6G024120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	249
AasI	GACNNNNNNGTC	1 cut(s)	47
AccBSI	CCGCTC	1 cut(s)	141
AciI	CCGC	4 cut(s)	43, 141, 164, 440
AclWI	GGATC	1 cut(s)	126
AcoI	YGGCCR	1 cut(s)	360
AcsI	RAATTY	2 cut(s)	32, 267
AfaI	GTAC	1 cut(s)	77
AfiI	CCNNNNNNNGG	1 cut(s)	458
AflIII	ACRYGT	1 cut(s)	527
AhdI	GACNNNNNGTC	1 cut(s)	201
AluBI	AGCT	3 cut(s)	310, 330, 338
AluI	AGCT	3 cut(s)	310, 330, 338
Alw21I	GWGCWC	2 cut(s)	93, 332
Alw26I	GTCTC	1 cut(s)	459
AlwI	GGATC	1 cut(s)	126
AoxI	GGCC	2 cut(s)	360, 449
ApeKI	GCWGC	1 cut(s)	54
ApoI	RAATTY	2 cut(s)	32, 267
AsuHPI	GGTGA	2 cut(s)	155, 294
BaeGI	GKGCMC	1 cut(s)	105
BanII	GRGCYC	1 cut(s)	332
Bbv12I	GWGCWC	2 cut(s)	93, 332
BbvI	GCAGC	1 cut(s)	41
BccI	CCATC	1 cut(s)	452
BciVI	GTATCC	1 cut(s)	246
BcoDI	GTCTC	1 cut(s)	459
BfaI	CTAG	2 cut(s)	272, 447
BfmI	CTRYAG	1 cut(s)	84
BfuI	GTATCC	1 cut(s)	246
BisI	GCNGC	1 cut(s)	55
BlsI	GCNGC	1 cut(s)	56
BmeRI	GACNNNNNGTC	1 cut(s)	201
BmsI	GCATC	2 cut(s)	136, 184
BplI	GAGNNNNNCTC	2 cut(s)	20, 52
Bsa29I	ATCGAT	1 cut(s)	130
BsaXI	ACNNNNNCTCC	4 cut(s)	8, 26, 32, 38
Bsc4I	CCNNNNNNNGG	1 cut(s)	458
Bse1I	ACTGG	1 cut(s)	295
Bse3DI	GCAATG	2 cut(s)	157, 436
BseCI	ATCGAT	1 cut(s)	130
BseGI	GGATG	1 cut(s)	175
BseLI	CCNNNNNNNGG	1 cut(s)	458
BseMI	GCAATG	2 cut(s)	157, 436
BseNI	ACTGG	1 cut(s)	295
BseSI	GKGCMC	1 cut(s)	105
BseX3I	CGGCCG	1 cut(s)	360
BseXI	GCAGC	1 cut(s)	41
Bsh1285I	CGRYCG	2 cut(s)	43, 363
BshFI	GGCC	2 cut(s)	362, 451
BshVI	ATCGAT	1 cut(s)	130
BsiEI	CGRYCG	2 cut(s)	43, 363
BsiHKAI	GWGCWC	2 cut(s)	93, 332
BsiSI	CCGG	1 cut(s)	359
BslI	CCNNNNNNNGG	1 cut(s)	458
BsmAI	GTCTC	1 cut(s)	459
BsnI	GGCC	2 cut(s)	362, 451
Bsp1286I	GDGCHC	3 cut(s)	93, 105, 332
Bsp1407I	TGTACA	1 cut(s)	75
Bsp143I	GATC	1 cut(s)	131
BspACI	CCGC	4 cut(s)	43, 141, 164, 440
BspANI	GGCC	2 cut(s)	362, 451
BspDI	ATCGAT	1 cut(s)	130
BspPI	GGATC	1 cut(s)	126
BsrBI	CCGCTC	1 cut(s)	141
BsrDI	GCAATG	2 cut(s)	157, 436
BsrGI	TGTACA	1 cut(s)	75
BsrI	ACTGG	1 cut(s)	295
BssMI	GATC	1 cut(s)	131
Bst6I	CTCTTC	2 cut(s)	248, 273
BstAUI	TGTACA	1 cut(s)	75
BstC8I	GCNNGC	2 cut(s)	125, 164
BstDEI	CTNAG	1 cut(s)	425
BstF5I	GGATG	1 cut(s)	175
BstKTI	GATC	1 cut(s)	134
BstMAI	GTCTC	1 cut(s)	459
BstMBI	GATC	1 cut(s)	131
BstMCI	CGRYCG	2 cut(s)	43, 363
BstMWI	GCNNNNNNNGC	3 cut(s)	51, 88, 172
BstNSI	RCATGY	1 cut(s)	61
BstSFI	CTRYAG	1 cut(s)	84
BstSLI	GKGCMC	1 cut(s)	105
BstV1I	GCAGC	1 cut(s)	41
BstZI	CGGCCG	1 cut(s)	360
Bsu15I	ATCGAT	1 cut(s)	130
BsuI	GTATCC	1 cut(s)	246
BsuRI	GGCC	2 cut(s)	362, 451
BsuTUI	ATCGAT	1 cut(s)	130
BtsCI	GGATG	1 cut(s)	175
Cac8I	GCNNGC	2 cut(s)	125, 164
ClaI	ATCGAT	1 cut(s)	130
Csp6I	GTAC	1 cut(s)	76
CviAII	CATG	2 cut(s)	58, 136
CviJI	RGCY	8 cut(s)	82, 294, 310, 323, 330, 338, 362, 451
CviKI_1	RGCY	8 cut(s)	82, 294, 310, 323, 330, 338, 362, 451
CviQI	GTAC	1 cut(s)	76
DdeI	CTNAG	1 cut(s)	425
DpnI	GATC	1 cut(s)	133
DpnII	GATC	1 cut(s)	131
DrdI	GACNNNNNNGTC	1 cut(s)	47
DriI	GACNNNNNGTC	1 cut(s)	201
DseDI	GACNNNNNNGTC	1 cut(s)	47
EaeI	YGGCCR	1 cut(s)	360
EagI	CGGCCG	1 cut(s)	360
Eam1104I	CTCTTC	2 cut(s)	248, 273
Eam1105I	GACNNNNNGTC	1 cut(s)	201
EarI	CTCTTC	2 cut(s)	248, 273
Ecl136II	GAGCTC	1 cut(s)	330
EclXI	CGGCCG	1 cut(s)	360
Eco147I	AGGCCT	1 cut(s)	451
Eco24I	GRGCYC	1 cut(s)	332
Eco52I	CGGCCG	1 cut(s)	360
Eco53kI	GAGCTC	1 cut(s)	330
EcoICRI	GAGCTC	1 cut(s)	330
EcoRI	GAATTC	1 cut(s)	32
EcoT38I	GRGCYC	1 cut(s)	332
FaeI	CATG	2 cut(s)	61, 139
FatI	CATG	2 cut(s)	57, 135
FauI	CCCGC	1 cut(s)	171
Fnu4HI	GCNGC	1 cut(s)	55
FokI	GGATG	1 cut(s)	162
FriOI	GRGCYC	1 cut(s)	332
Fsp4HI	GCNGC	1 cut(s)	55
FspBI	CTAG	2 cut(s)	272, 447
GluI	GCNGC	1 cut(s)	55
HaeIII	GGCC	2 cut(s)	362, 451
HapII	CCGG	1 cut(s)	359
Hin1II	CATG	2 cut(s)	61, 139
HinfI	GANTC	7 cut(s)	5, 11, 17, 23, 347, 365, 413
HpaII	CCGG	1 cut(s)	359
HphI	GGTGA	2 cut(s)	155, 294
Hpy166II	GTNNAC	1 cut(s)	221
Hpy188I	TCNGA	6 cut(s)	10, 16, 22, 28, 40, 195
Hpy188III	TCNNGA	3 cut(s)	65, 272, 344
Hpy8I	GTNNAC	1 cut(s)	221
HpyCH4IV	ACGT	2 cut(s)	105, 527
HpyCH4V	TGCA	5 cut(s)	57, 127, 265, 389, 397
HpyF10VI	GCNNNNNNNGC	3 cut(s)	51, 88, 172
HpyF3I	CTNAG	1 cut(s)	425
HpySE526I	ACGT	2 cut(s)	105, 527
Hsp92II	CATG	2 cut(s)	61, 139
Kzo9I	GATC	1 cut(s)	131
LmnI	GCTCC	1 cut(s)	327
LpnPI	CCDG	7 cut(s)	50, 103, 109, 276, 305, 372, 383
Lsp1109I	GCAGC	1 cut(s)	41
LweI	GCATC	2 cut(s)	136, 184
MaeI	CTAG	2 cut(s)	272, 447
MaeII	ACGT	2 cut(s)	105, 527
MaeIII	GTNAC	1 cut(s)	487
MalI	GATC	1 cut(s)	133
MbiI	CCGCTC	1 cut(s)	141
MboI	GATC	1 cut(s)	131
MboII	GAAGA	4 cut(s)	265, 287, 290, 295
MfeI	CAATTG	1 cut(s)	206
MhlI	GDGCHC	3 cut(s)	93, 105, 332
MluCI	AATT	4 cut(s)	32, 206, 260, 267
MlyI	GAGTC	6 cut(s)	14, 20, 26, 32, 341, 359
MmeI	TCCRAC	3 cut(s)	6, 63, 218
MnlI	CCTC	5 cut(s)	22, 249, 249, 466, 545
MspA1I	CMGCKG	1 cut(s)	440
MspI	CCGG	1 cut(s)	359
MunI	CAATTG	1 cut(s)	206
MwoI	GCNNNNNNNGC	3 cut(s)	51, 88, 172
NdeII	GATC	1 cut(s)	131
NlaIII	CATG	2 cut(s)	61, 139
NspI	RCATGY	1 cut(s)	61
PceI	AGGCCT	1 cut(s)	451
PfeI	GAWTC	1 cut(s)	413
PkrI	GCNGC	1 cut(s)	56
PleI	GAGTC	6 cut(s)	13, 19, 25, 31, 341, 359
PpsI	GAGTC	6 cut(s)	13, 19, 25, 31, 341, 359
PsiI	TTATAA	1 cut(s)	249
Psp124BI	GAGCTC	1 cut(s)	332
RsaI	GTAC	1 cut(s)	77
RsaNI	GTAC	1 cut(s)	76
SacI	GAGCTC	1 cut(s)	332
SatI	GCNGC	1 cut(s)	55
Sau3AI	GATC	1 cut(s)	131
SchI	GAGTC	6 cut(s)	14, 20, 26, 32, 341, 359
SduI	GDGCHC	3 cut(s)	93, 105, 332
SetI	ASST	5 cut(s)	108, 312, 332, 340, 530
SfaNI	GCATC	2 cut(s)	136, 184
SfcI	CTRYAG	1 cut(s)	84
Sse9I	AATT	4 cut(s)	32, 206, 260, 267
SseBI	AGGCCT	1 cut(s)	451
SsiI	CCGC	4 cut(s)	43, 141, 164, 440
SspI	AATATT	1 cut(s)	355
SspMI	CTAG	2 cut(s)	272, 447
SstI	GAGCTC	1 cut(s)	332
StuI	AGGCCT	1 cut(s)	451
TaiI	ACGT	2 cut(s)	108, 530
TaqI	TCGA	2 cut(s)	130, 411
TasI	AATT	4 cut(s)	32, 206, 260, 267
TatI	WGTACW	1 cut(s)	75
TfiI	GAWTC	1 cut(s)	413
TseI	GCWGC	1 cut(s)	54
TspDTI	ATGAA	2 cut(s)	203, 405
XapI	RAATTY	2 cut(s)	32, 267
XbaI	TCTAGA	1 cut(s)	271
XceI	RCATGY	1 cut(s)	61
XspI	CTAG	2 cut(s)	272, 447

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.