RLG00000012701

zinc ion binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0005665
Physical Location & Seq
Forward (+)
21457395 .. 21459397
2003 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000012701

Sequence Viewer

Length: 654 bp
ATGTCAAGTTTGTCAAAGTTTCCATCCAACGGATATCCAAAAGTTTGTTTGAATCTGCAAAACTTTTTGATCGAACAGTTTCCAAAAGAACTTGCACATAGAAGAGATGGTGTACAACTTAAGCATGTTAATCCAACTGCATGTGAAAGCAAAAGCAGTAAAGAAGCCGAGAAGTCATCATGGGGTTCATACCACATAGGATTTAGCTGTGATTATTGTGGGGATAATAACATCTTAGTTTCTTCTGTTGAACCGATAATTGGGGATAGATACCGGTGCAAAGATTGTGTGGAGAAAATTGGAGTTGACCTTTGCAATGATTGTTATAATACTAGTTCCAGGCTTCCAGGTCGATTCAATCAGCAACATACAGCAGAACACCAGTTTGAGCTTATACGCGGTGACATTATTCGTGGGTCAGTTAAGGATAATAAAGGATTCCAGAGGAAGATGCCGGGAATAGAGAGCTTCCCCATGCTACCTCCACCAATAGTGAAAATGATGAGGATGATCAAGATGACTCTCAACCAAGTTTTCAGCACGGTGGCATTTGAGGCTTGTGTTTTGTTTGGCCTTCAGATGCTTCCTTATGTTGTGAATAATGTCTTTTCCCAGGATTATATCATGGCAAAGGTTTCTAAGGAAGACTACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ZZ

Protein Analysis

218

Amino Acids

24.67

Weight (kDa)

8.33

Isoelectric Point (pI)

50.08

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 327
AccII CGCG 1 cut(s) 399
AciI CCGC 1 cut(s) 399
AcuI CTGAAG 1 cut(s) 560
AfaI GTAC 1 cut(s) 114
AfiI CCNNNNNNNGG 2 cut(s) 29, 260
AflII CTTAAG 1 cut(s) 119
AgeI ACCGGT 1 cut(s) 273
AgsI TTSAA 3 cut(s) 52, 251, 358
AhlI ACTAGT 1 cut(s) 332
AjnI CCWGG 3 cut(s) 338, 346, 612
AjuI GAANNNNNNNTTGG 2 cut(s) 243, 275
AluBI AGCT 3 cut(s) 207, 391, 468
AluI AGCT 3 cut(s) 207, 391, 468
AoxI GGCC 1 cut(s) 571
AsiGI ACCGGT 1 cut(s) 273
Asp700I GAANNNNTTC 1 cut(s) 78
AsuC2I CCSGG 1 cut(s) 456
AsuHPI GGTGA 1 cut(s) 413
BccI CCATC 2 cut(s) 31, 101
BciT130I CCWGG 3 cut(s) 340, 348, 614
BclI TGATCA 1 cut(s) 510
BcnI CCSGG 1 cut(s) 456
BcuI ACTAGT 1 cut(s) 332
BfaI CTAG 2 cut(s) 333, 652
BfrI CTTAAG 1 cut(s) 119
Bme1390I CCNGG 4 cut(s) 340, 348, 456, 614
BmrFI CCNGG 4 cut(s) 340, 348, 456, 614
BmsI GCATC 2 cut(s) 441, 570
BpuMI CCSGG 1 cut(s) 456
BsaJI CCNNGG 1 cut(s) 612
BsaWI WCCGGW 1 cut(s) 273
Bsc4I CCNNNNNNNGG 2 cut(s) 29, 260
Bse118I RCCGGY 1 cut(s) 273
Bse1I ACTGG 1 cut(s) 382
Bse3DI GCAATG 1 cut(s) 322
BseBI CCWGG 3 cut(s) 340, 348, 614
BseDI CCNNGG 1 cut(s) 612
BseGI GGATG 2 cut(s) 23, 513
BseLI CCNNNNNNNGG 2 cut(s) 29, 260
BseMI GCAATG 1 cut(s) 322
BseNI ACTGG 1 cut(s) 382
Bsh1236I CGCG 1 cut(s) 399
BshFI GGCC 1 cut(s) 573
BshTI ACCGGT 1 cut(s) 273
BsiSI CCGG 2 cut(s) 274, 455
BslI CCNNNNNNNGG 2 cut(s) 29, 260
BsnI GGCC 1 cut(s) 573
Bsp1407I TGTACA 1 cut(s) 112
Bsp143I GATC 2 cut(s) 69, 510
BspACI CCGC 1 cut(s) 399
BspANI GGCC 1 cut(s) 573
BspFNI CGCG 1 cut(s) 399
BspTI CTTAAG 1 cut(s) 119
BsrDI GCAATG 1 cut(s) 322
BsrFI RCCGGY 1 cut(s) 273
BsrGI TGTACA 1 cut(s) 112
BsrI ACTGG 1 cut(s) 382
BssAI RCCGGY 1 cut(s) 273
BssECI CCNNGG 1 cut(s) 612
BssMI GATC 2 cut(s) 69, 510
Bst2UI CCWGG 3 cut(s) 340, 348, 614
Bst4CI ACNGT 2 cut(s) 78, 544
Bst6I CTCTTC 1 cut(s) 97
BstAFI CTTAAG 1 cut(s) 119
BstAUI TGTACA 1 cut(s) 112
BstDEI CTNAG 2 cut(s) 235, 639
BstF5I GGATG 2 cut(s) 23, 513
BstFNI CGCG 1 cut(s) 399
BstKTI GATC 2 cut(s) 72, 513
BstMBI GATC 2 cut(s) 69, 510
BstMWI GCNNNNNNNGC 1 cut(s) 554
BstNI CCWGG 3 cut(s) 340, 348, 614
BstNSI RCATGY 2 cut(s) 128, 144
BstSCI CCNGG 4 cut(s) 338, 346, 454, 612
BstUI CGCG 1 cut(s) 399
BsuRI GGCC 1 cut(s) 573
BtsCI GGATG 2 cut(s) 23, 513
Cfr10I RCCGGY 1 cut(s) 273
Csp6I GTAC 1 cut(s) 113
CspAI ACCGGT 1 cut(s) 273
CviAII CATG 5 cut(s) 125, 141, 180, 475, 625
CviJI RGCY 7 cut(s) 167, 207, 343, 391, 468, 557, 573
CviKI_1 RGCY 7 cut(s) 167, 207, 343, 391, 468, 557, 573
CviQI GTAC 1 cut(s) 113
DdeI CTNAG 2 cut(s) 235, 639
DpnI GATC 2 cut(s) 71, 512
DpnII GATC 2 cut(s) 69, 510
Eam1104I CTCTTC 1 cut(s) 97
EarI CTCTTC 1 cut(s) 97
Eco32I GATATC 1 cut(s) 35
Eco57I CTGAAG 1 cut(s) 560
EcoRII CCWGG 3 cut(s) 338, 346, 612
EcoRV GATATC 1 cut(s) 35
FaeI CATG 5 cut(s) 128, 144, 183, 478, 628
FatI CATG 5 cut(s) 124, 140, 179, 474, 624
FbaI TGATCA 1 cut(s) 510
FokI GGATG 2 cut(s) 10, 520
FspBI CTAG 2 cut(s) 333, 652
HaeIII GGCC 1 cut(s) 573
HapII CCGG 2 cut(s) 274, 455
Hin1II CATG 5 cut(s) 128, 144, 183, 478, 628
HincII GTYRAC 1 cut(s) 307
HindII GTYRAC 1 cut(s) 307
HinfI GANTC 4 cut(s) 52, 354, 438, 520
HpaII CCGG 2 cut(s) 274, 455
HphI GGTGA 1 cut(s) 413
Hpy166II GTNNAC 2 cut(s) 113, 307
Hpy188I TCNGA 1 cut(s) 579
Hpy188III TCNNGA 2 cut(s) 442, 514
Hpy8I GTNNAC 2 cut(s) 113, 307
HpyAV CCTTC 1 cut(s) 584
HpyCH4III ACNGT 2 cut(s) 78, 544
HpyCH4V TGCA 5 cut(s) 58, 95, 140, 279, 315
HpyF10VI GCNNNNNNNGC 1 cut(s) 554
HpyF3I CTNAG 2 cut(s) 235, 639
Hsp92II CATG 5 cut(s) 128, 144, 183, 478, 628
Ksp22I TGATCA 1 cut(s) 510
Kzo9I GATC 2 cut(s) 69, 510
LweI GCATC 2 cut(s) 441, 570
MaeI CTAG 2 cut(s) 333, 652
MaeIII GTNAC 1 cut(s) 401
MalI GATC 2 cut(s) 71, 512
MboI GATC 2 cut(s) 69, 510
MboII GAAGA 3 cut(s) 114, 234, 460
MluCI AATT 2 cut(s) 258, 297
MlyI GAGTC 1 cut(s) 514
MmeI TCCRAC 2 cut(s) 51, 158
MnlI CCTC 4 cut(s) 438, 492, 498, 547
MroXI GAANNNNTTC 1 cut(s) 78
MseI TTAA 3 cut(s) 120, 129, 423
MspCI CTTAAG 1 cut(s) 119
MspI CCGG 2 cut(s) 274, 455
MspR9I CCNGG 4 cut(s) 340, 348, 456, 614
MvaI CCWGG 3 cut(s) 340, 348, 614
MvnI CGCG 1 cut(s) 399
MwoI GCNNNNNNNGC 1 cut(s) 554
NciI CCSGG 1 cut(s) 456
NdeII GATC 2 cut(s) 69, 510
NlaIII CATG 5 cut(s) 128, 144, 183, 478, 628
NmeAIII GCCGAG 1 cut(s) 193
NmuCI GTSAC 1 cut(s) 401
NspI RCATGY 2 cut(s) 128, 144
PdmI GAANNNNTTC 1 cut(s) 78
PfeI GAWTC 3 cut(s) 52, 354, 438
PinAI ACCGGT 1 cut(s) 273
PleI GAGTC 1 cut(s) 514
PpsI GAGTC 1 cut(s) 514
PsiI TTATAA 1 cut(s) 327
Psp6I CCWGG 3 cut(s) 338, 346, 612
PspGI CCWGG 3 cut(s) 338, 346, 612
RsaI GTAC 1 cut(s) 114
RsaNI GTAC 1 cut(s) 113
SaqAI TTAA 3 cut(s) 120, 129, 423
Sau3AI GATC 2 cut(s) 69, 510
SchI GAGTC 1 cut(s) 514
ScrFI CCNGG 4 cut(s) 340, 348, 456, 614
SetI ASST 7 cut(s) 209, 312, 352, 393, 470, 484, 636
SfaNI GCATC 2 cut(s) 441, 570
SmlI CTYRAG 1 cut(s) 119
SmoI CTYRAG 1 cut(s) 119
SpeI ACTAGT 1 cut(s) 332
Sse9I AATT 2 cut(s) 258, 297
SsiI CCGC 1 cut(s) 399
SspMI CTAG 2 cut(s) 333, 652
StyD4I CCNGG 4 cut(s) 338, 346, 454, 612
TaaI ACNGT 2 cut(s) 78, 544
TaqI TCGA 2 cut(s) 72, 352
TasI AATT 2 cut(s) 258, 297
TatI WGTACW 1 cut(s) 112
TfiI GAWTC 3 cut(s) 52, 354, 438
Tru1I TTAA 3 cut(s) 120, 129, 423
Tru9I TTAA 3 cut(s) 120, 129, 423
TseFI GTSAC 1 cut(s) 401
Tsp45I GTSAC 1 cut(s) 401
TspDTI ATGAA 1 cut(s) 177
TspGWI ACGGA 1 cut(s) 45
Vha464I CTTAAG 1 cut(s) 119
XceI RCATGY 2 cut(s) 128, 144
XmnI GAANNNNTTC 1 cut(s) 78
XspI CTAG 2 cut(s) 333, 652
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.