Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0005665

Physical Location & Seq

Genomic Coordinates Forward (+)

23117721 .. 23120824

Gene Structure 3104 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00183950.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1251 bp

ATGGAAAATCATCAAATCTCCGGCGGCGAGGAGGAGGAGGAGGAGTCGGAGGAATGCTCCGACCGCTTCGTCTGCTGCGTGTGTCTGGAACTTCTGTACAAGCCTATAGTGCTCTCCTGTGGGCACGTTTCGTGTTTCTGGTGCGTGCATCGATCCATGAGCGGTGAAAAGCAGTCTCATTGCCCGCTTTGTAGGCATCCCTATAATCACTTTCCGACTATATGTCAATTGCTTCATTGTTTACTGCTCAAGTTGTATCCTGTTGCTTATAAGAAGAGGGGATTGCAAATTCTAGAAGAAGAGAAGAAAACTGGCTACTCCTCACCACAGCTTGATGTTCAGGCTTGGAGCTCACAAGCTAATCAAGACTCAAATATTCTGGGCGACTCTGTACGCAAAGAGTTGAGTGCAAATATGGAGGACACAGTTTTCGATTCATATAATCTAAACAATGGCATAGCGGTATCTAGGCCTACTGATGGTGGAGACTATGAGGGAATGGAGAATGTTACCCTGTTATCTCAGCGGCAGAGCGGAAGTCCCAAGCAGATTTCAGTTGCAGATGTGCTATGTGCTGCATGCAAAGAACTGCTGTTTCGTCCTGTGGTTCTTAATTGTGGCCATGTATATTGTGAAAGTTGTATCATCAAACAAGATGAAGAGAAGATTAGATGTCAAGTTTGTCCAAGTTTCCATCCAACCGGATATCCAAAAGTTTGTTTGGATCTGCAAAACTTTTTGATCGAACAGTTTCCTAAAGAACTTGCACATAGAAGAGATGGTGTACAGCTCAAGCATGTTAAACCAACTACTTGTGAAAGCAAAAGCAGTCAAGAAGCAGAGAAGTCATCATCGGGTTCATATCATGGAGGAATTGGCTGTGATTATTGTGGGATGATGCCAATAATTGGGGATAGATACCGGTGCAAAGATTGTGTGGAGATAATTGGATTTGACCTTTGCAATGATTGTTATAATACTAGTTCCAAGCTTCCAGGTCGATTTAATCAGCAACATACAGCAGAACACCAGTTTGAGCTTATACGCAGCGACAATATGCGTGGTCCGTTCAGGATAATGACTGAGCGGTTAAGGGATGGTTCTTTAGCTGTTTTACTGGCTCACATGTCAGGGATTCCAGAGGAAGATGCCGGGAATAGAGAGCTCCCCCATGCTCCTTCCACCAATAGTGAAAATGATGAGGATGATCAAGATGGCTCTCAACCAAGTTTTCAGCACGGTGGCATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009605 GO:0009607 GO:0009620 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043207 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0050832 GO:0050896 GO:0051603 GO:0051704 GO:0051707 GO:0061630 GO:0061659 GO:0070647 GO:0071596 GO:0071704 GO:0098542 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ZZ zf-C3HC4_3 zf-C3HC4_4 zf-RING_UBOX

Protein Analysis

416

Amino Acids

46.66

Weight (kDa)

5.29

Isoelectric Point (pI)

56.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-C3HC4_3	PF13920	24 - 69	8e-07	Zinc finger, C3HC4 type (RING finger)
zf-C3HC4_2	PF13923	25 - 64	2.2e-06	Zinc finger, C3HC4 type (RING finger)
zf-RING_UBOX	PF13445	191 - 229	4e-07	RING-type zinc-finger
ZZ	PF00569	291 - 329	2e-07	Zinc finger, ZZ type

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005665)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G24800
fragaria_vesca	FvH4_2g19100 FvH4_2g19100 FvH4_2g19100 FvH4_6g51520
malus_domestica	MD10G1165000.v1.1
prunus_persica	Prupe.8G203400_v2.0.a1 Prupe.8G203400_v2.0.a1 Prupe.8G203400_v2.0.a1
pyrus_communis	pycom10g14220
rosa_chinensis	RchiOBHm_Chr6g0284931
rosa_laevigata	RLG00000012700 RLG00000012701
rosa_multiflora	Rmu_sc0004961.1_g000001 Rmu_sc0004961.1_g000002
rosa_roxburghii	Rroxscaffold_7G00183950 Rroxscaffold_7G00183960 Rroxscaffold_7G00184220
rosa_rugosa	Rorug06G0168600 Rorug06G0168700
rosa_samantha	Rh6AG280700 Rh6BG281000 Rh6BG281100 Rh6BG281200 Rh6BG281300 Rh6CG283000 Rh6DG276100
rosa_wichuraiana	Rw6G024120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	270, 975
AasI	GACNNNNNNGTC	1 cut(s)	68
AccB7I	CCANNNNNTGG	1 cut(s)	908
AccBSI	CCGCTC	3 cut(s)	162, 534, 1087
AciI	CCGC	8 cut(s)	24, 64, 162, 185, 461, 526, 534, 1087
AclWI	GGATC	2 cut(s)	147, 732
AcoI	YGGCCR	1 cut(s)	619
AcsI	RAATTY	1 cut(s)	288
AfaI	GTAC	3 cut(s)	98, 393, 786
AfiI	CCNNNNNNNGG	2 cut(s)	479, 908
AflIII	ACRYGT	1 cut(s)	1125
AgeI	ACCGGT	1 cut(s)	921
AhdI	GACNNNNNGTC	1 cut(s)	222
AhlI	ACTAGT	1 cut(s)	980
AjnI	CCWGG	1 cut(s)	994
AluBI	AGCT	8 cut(s)	331, 351, 359, 790, 991, 1039, 1109, 1165
AluI	AGCT	8 cut(s)	331, 351, 359, 790, 991, 1039, 1109, 1165
Alw21I	GWGCWC	3 cut(s)	114, 353, 1167
Alw26I	GTCTC	2 cut(s)	180, 480
AlwI	GGATC	2 cut(s)	147, 732
AoxI	GGCC	2 cut(s)	470, 619
ApeKI	GCWGC	3 cut(s)	75, 575, 1047
ApoI	RAATTY	1 cut(s)	288
ArsI	GACNNNNNNTTYG	2 cut(s)	413, 445
AsiGI	ACCGGT	1 cut(s)	921
Asp700I	GAANNNNTTC	1 cut(s)	750
AspS9I	GGNCC	1 cut(s)	1064
AsuC2I	CCSGG	1 cut(s)	1153
AsuHPI	GGTGA	2 cut(s)	176, 315
AvaII	GGWCC	1 cut(s)	1064
BaeGI	GKGCMC	1 cut(s)	126
BalI	TGGCCA	1 cut(s)	621
BanII	GRGCYC	2 cut(s)	353, 1167
Bbv12I	GWGCWC	3 cut(s)	114, 353, 1167
BbvI	GCAGC	3 cut(s)	62, 562, 1059
BccI	CCATC	5 cut(s)	473, 702, 773, 1091, 1208
BciT130I	CCWGG	1 cut(s)	996
BciVI	GTATCC	1 cut(s)	267
BclI	TGATCA	1 cut(s)	1207
BcnI	CCSGG	1 cut(s)	1153
BcoDI	GTCTC	2 cut(s)	180, 480
BcuI	ACTAGT	1 cut(s)	980
BfaI	CTAG	3 cut(s)	293, 468, 981
BfmI	CTRYAG	1 cut(s)	105
BfuI	GTATCC	1 cut(s)	267
BisI	GCNGC	5 cut(s)	25, 76, 527, 576, 1048
BlsI	GCNGC	5 cut(s)	26, 77, 528, 577, 1049
Bme1390I	CCNGG	2 cut(s)	996, 1153
Bme18I	GGWCC	1 cut(s)	1064
BmeRI	GACNNNNNGTC	1 cut(s)	222
BmgT120I	GGNCC	1 cut(s)	1064
BmrFI	CCNGG	2 cut(s)	996, 1153
BmsI	GCATC	4 cut(s)	157, 205, 888, 1138
BplI	GAGNNNNNCTC	2 cut(s)	41, 73
BpuEI	CTTGAG	2 cut(s)	233, 776
BpuMI	CCSGG	1 cut(s)	1153
Bsa29I	ATCGAT	1 cut(s)	151
BsaWI	WCCGGW	2 cut(s)	701, 921
BsaXI	ACNNNNNCTCC	2 cut(s)	29, 59
Bsc4I	CCNNNNNNNGG	2 cut(s)	479, 908
Bse118I	RCCGGY	1 cut(s)	921
Bse1I	ACTGG	3 cut(s)	316, 1030, 1122
Bse3DI	GCAATG	2 cut(s)	178, 970
BseBI	CCWGG	1 cut(s)	996
BseCI	ATCGAT	1 cut(s)	151
BseGI	GGATG	5 cut(s)	196, 694, 900, 1102, 1210
BseLI	CCNNNNNNNGG	2 cut(s)	479, 908
BseMI	GCAATG	2 cut(s)	178, 970
BseMII	CTCAG	2 cut(s)	536, 1074
BseNI	ACTGG	3 cut(s)	316, 1030, 1122
BseRI	GAGGAG	6 cut(s)	44, 47, 50, 53, 56, 310
BseSI	GKGCMC	1 cut(s)	126
BseXI	GCAGC	3 cut(s)	62, 562, 1059
Bsh1285I	CGRYCG	1 cut(s)	64
BshFI	GGCC	2 cut(s)	472, 621
BshTI	ACCGGT	1 cut(s)	921
BshVI	ATCGAT	1 cut(s)	151
BsiEI	CGRYCG	1 cut(s)	64
BsiHKAI	GWGCWC	3 cut(s)	114, 353, 1167
BsiSI	CCGG	4 cut(s)	21, 702, 922, 1152
BslFI	GGGAC	1 cut(s)	525
BslI	CCNNNNNNNGG	2 cut(s)	479, 908
BsmAI	GTCTC	2 cut(s)	180, 480
BsmFI	GGGAC	1 cut(s)	525
BsmI	GAATGC	1 cut(s)	59
BsnI	GGCC	2 cut(s)	472, 621
Bsp1286I	GDGCHC	4 cut(s)	114, 126, 353, 1167
Bsp1407I	TGTACA	2 cut(s)	96, 784
Bsp143I	GATC	4 cut(s)	152, 724, 741, 1207
BspACI	CCGC	8 cut(s)	24, 64, 162, 185, 461, 526, 534, 1087
BspANI	GGCC	2 cut(s)	472, 621
BspCNI	CTCAG	2 cut(s)	535, 1075
BspDI	ATCGAT	1 cut(s)	151
BspPI	GGATC	2 cut(s)	147, 732
BsrBI	CCGCTC	3 cut(s)	162, 534, 1087
BsrDI	GCAATG	2 cut(s)	178, 970
BsrFI	RCCGGY	1 cut(s)	921
BsrGI	TGTACA	2 cut(s)	96, 784
BsrI	ACTGG	3 cut(s)	316, 1030, 1122
BssAI	RCCGGY	1 cut(s)	921
BssMI	GATC	4 cut(s)	152, 724, 741, 1207
Bst2UI	CCWGG	1 cut(s)	996
Bst4CI	ACNGT	3 cut(s)	427, 750, 1241
Bst6I	CTCTTC	4 cut(s)	269, 294, 654, 769
BstAUI	TGTACA	2 cut(s)	96, 784
BstC8I	GCNNGC	3 cut(s)	146, 185, 580
BstDEI	CTNAG	2 cut(s)	522, 1083
BstF5I	GGATG	5 cut(s)	196, 694, 900, 1102, 1210
BstKTI	GATC	4 cut(s)	155, 727, 744, 1210
BstMAI	GTCTC	2 cut(s)	180, 480
BstMBI	GATC	4 cut(s)	152, 724, 741, 1207
BstMCI	CGRYCG	1 cut(s)	64
BstMWI	GCNNNNNNNGC	4 cut(s)	63, 72, 109, 193
BstNI	CCWGG	1 cut(s)	996
BstNSI	RCATGY	3 cut(s)	582, 800, 1129
BstSCI	CCNGG	2 cut(s)	994, 1151
BstSFI	CTRYAG	1 cut(s)	105
BstSLI	GKGCMC	1 cut(s)	126
BstV1I	GCAGC	3 cut(s)	62, 562, 1059
BstX2I	RGATCY	1 cut(s)	724
BstYI	RGATCY	1 cut(s)	724
Bsu15I	ATCGAT	1 cut(s)	151
BsuI	GTATCC	1 cut(s)	267
BsuRI	GGCC	2 cut(s)	472, 621
BsuTUI	ATCGAT	1 cut(s)	151
BtsCI	GGATG	5 cut(s)	196, 694, 900, 1102, 1210
Cac8I	GCNNGC	3 cut(s)	146, 185, 580
Cfr10I	RCCGGY	1 cut(s)	921
Cfr13I	GGNCC	1 cut(s)	1064
ClaI	ATCGAT	1 cut(s)	151
Csp6I	GTAC	3 cut(s)	97, 392, 785
CspAI	ACCGGT	1 cut(s)	921
CspCI	CAANNNNNGTGG	2 cut(s)	1042, 1077
CviAII	CATG	7 cut(s)	157, 579, 623, 797, 866, 1126, 1172
CviQI	GTAC	3 cut(s)	97, 392, 785
DdeI	CTNAG	2 cut(s)	522, 1083
DpnI	GATC	4 cut(s)	154, 726, 743, 1209
DpnII	GATC	4 cut(s)	152, 724, 741, 1207
DrdI	GACNNNNNNGTC	1 cut(s)	68
DriI	GACNNNNNGTC	1 cut(s)	222
DseDI	GACNNNNNNGTC	1 cut(s)	68
EaeI	YGGCCR	1 cut(s)	619
Eam1104I	CTCTTC	4 cut(s)	269, 294, 654, 769
Eam1105I	GACNNNNNGTC	1 cut(s)	222
EarI	CTCTTC	4 cut(s)	269, 294, 654, 769
Ecl136II	GAGCTC	2 cut(s)	351, 1165
Eco147I	AGGCCT	1 cut(s)	472
Eco24I	GRGCYC	2 cut(s)	353, 1167
Eco32I	GATATC	1 cut(s)	707
Eco47I	GGWCC	1 cut(s)	1064
Eco53kI	GAGCTC	2 cut(s)	351, 1165
EcoICRI	GAGCTC	2 cut(s)	351, 1165
EcoRII	CCWGG	1 cut(s)	994
EcoRV	GATATC	1 cut(s)	707
EcoT38I	GRGCYC	2 cut(s)	353, 1167
FaeI	CATG	7 cut(s)	160, 582, 626, 800, 869, 1129, 1175
FaqI	GGGAC	1 cut(s)	525
FatI	CATG	7 cut(s)	156, 578, 622, 796, 865, 1125, 1171
FauI	CCCGC	1 cut(s)	192
FbaI	TGATCA	1 cut(s)	1207
Fnu4HI	GCNGC	5 cut(s)	25, 76, 527, 576, 1048
FokI	GGATG	5 cut(s)	183, 681, 907, 1109, 1217
FriOI	GRGCYC	2 cut(s)	353, 1167
Fsp4HI	GCNGC	5 cut(s)	25, 76, 527, 576, 1048
FspBI	CTAG	3 cut(s)	293, 468, 981
GluI	GCNGC	5 cut(s)	25, 76, 527, 576, 1048
HaeIII	GGCC	2 cut(s)	472, 621
HapII	CCGG	4 cut(s)	21, 702, 922, 1152
Hin1II	CATG	7 cut(s)	160, 582, 626, 800, 869, 1129, 1175
HindIII	AAGCTT	1 cut(s)	989
HinfI	GANTC	5 cut(s)	44, 368, 386, 434, 1135
HpaII	CCGG	4 cut(s)	21, 702, 922, 1152
HphI	GGTGA	2 cut(s)	176, 315
Hpy166II	GTNNAC	2 cut(s)	242, 785
Hpy188I	TCNGA	3 cut(s)	49, 61, 216
Hpy188III	TCNNGA	7 cut(s)	86, 293, 365, 833, 1072, 1139, 1211
Hpy8I	GTNNAC	2 cut(s)	242, 785
HpyAV	CCTTC	1 cut(s)	1188
HpyCH4III	ACNGT	3 cut(s)	427, 750, 1241
HpyCH4IV	ACGT	1 cut(s)	126
HpyF10VI	GCNNNNNNNGC	4 cut(s)	63, 72, 109, 193
HpyF3I	CTNAG	2 cut(s)	522, 1083
HpySE526I	ACGT	1 cut(s)	126
Hsp92II	CATG	7 cut(s)	160, 582, 626, 800, 869, 1129, 1175
Ksp22I	TGATCA	1 cut(s)	1207
Kzo9I	GATC	4 cut(s)	152, 724, 741, 1207
LmnI	GCTCC	4 cut(s)	62, 348, 1170, 1180
Lsp1109I	GCAGC	3 cut(s)	62, 562, 1059
LweI	GCATC	4 cut(s)	157, 205, 888, 1138
MaeI	CTAG	3 cut(s)	293, 468, 981
MaeII	ACGT	1 cut(s)	126
MaeIII	GTNAC	1 cut(s)	508
MalI	GATC	4 cut(s)	154, 726, 743, 1209
MbiI	CCGCTC	3 cut(s)	162, 534, 1087
MboI	GATC	4 cut(s)	152, 724, 741, 1207
MboII	GAAGA	8 cut(s)	286, 308, 311, 316, 671, 676, 786, 1157
MfeI	CAATTG	1 cut(s)	227
MflI	RGATCY	1 cut(s)	724
MhlI	GDGCHC	4 cut(s)	114, 126, 353, 1167
MlsI	TGGCCA	1 cut(s)	621
MluCI	AATT	6 cut(s)	227, 288, 613, 873, 906, 945
MluNI	TGGCCA	1 cut(s)	621
MlyI	GAGTC	3 cut(s)	53, 362, 380
MmeI	TCCRAC	4 cut(s)	27, 84, 239, 722
Mox20I	TGGCCA	1 cut(s)	621
MroXI	GAANNNNTTC	1 cut(s)	750
MscI	TGGCCA	1 cut(s)	621
MseI	TTAA	4 cut(s)	612, 801, 1005, 1091
Msp20I	TGGCCA	1 cut(s)	621
MspA1I	CMGCKG	1 cut(s)	526
MspI	CCGG	4 cut(s)	21, 702, 922, 1152
MspR9I	CCNGG	2 cut(s)	996, 1153
MunI	CAATTG	1 cut(s)	227
Mva1269I	GAATGC	1 cut(s)	59
MvaI	CCWGG	1 cut(s)	996
MwoI	GCNNNNNNNGC	4 cut(s)	63, 72, 109, 193
NciI	CCSGG	1 cut(s)	1153
NdeII	GATC	4 cut(s)	152, 724, 741, 1207
NlaIII	CATG	7 cut(s)	160, 582, 626, 800, 869, 1129, 1175
NspI	RCATGY	3 cut(s)	582, 800, 1129
PaeI	GCATGC	1 cut(s)	582
PceI	AGGCCT	1 cut(s)	472
PciI	ACATGT	1 cut(s)	1125
PcsI	WCGNNNNNNNCGW	1 cut(s)	75
PctI	GAATGC	1 cut(s)	59
PdmI	GAANNNNTTC	1 cut(s)	750
PfeI	GAWTC	2 cut(s)	434, 1135
PflMI	CCANNNNNTGG	1 cut(s)	908
PinAI	ACCGGT	1 cut(s)	921
PkrI	GCNGC	5 cut(s)	26, 77, 528, 577, 1049
PleI	GAGTC	3 cut(s)	52, 362, 380
PpsI	GAGTC	3 cut(s)	52, 362, 380
PscI	ACATGT	1 cut(s)	1125
PsiI	TTATAA	2 cut(s)	270, 975
Psp124BI	GAGCTC	2 cut(s)	353, 1167
Psp6I	CCWGG	1 cut(s)	994
PspGI	CCWGG	1 cut(s)	994
PspPI	GGNCC	1 cut(s)	1064
PsuI	RGATCY	1 cut(s)	724
RsaI	GTAC	3 cut(s)	98, 393, 786
RsaNI	GTAC	3 cut(s)	97, 392, 785
SacI	GAGCTC	2 cut(s)	353, 1167
SaqAI	TTAA	4 cut(s)	612, 801, 1005, 1091
SatI	GCNGC	5 cut(s)	25, 76, 527, 576, 1048
Sau3AI	GATC	4 cut(s)	152, 724, 741, 1207
Sau96I	GGNCC	1 cut(s)	1064
SchI	GAGTC	3 cut(s)	53, 362, 380
ScrFI	CCNGG	2 cut(s)	996, 1153
SduI	GDGCHC	4 cut(s)	114, 126, 353, 1167
SfaNI	GCATC	4 cut(s)	157, 205, 888, 1138
SfcI	CTRYAG	1 cut(s)	105
SinI	GGWCC	1 cut(s)	1064
SmlI	CTYRAG	2 cut(s)	248, 791
SmoI	CTYRAG	2 cut(s)	248, 791
SpeI	ACTAGT	1 cut(s)	980
SphI	GCATGC	1 cut(s)	582
Sse9I	AATT	6 cut(s)	227, 288, 613, 873, 906, 945
SseBI	AGGCCT	1 cut(s)	472
SsiI	CCGC	8 cut(s)	24, 64, 162, 185, 461, 526, 534, 1087
SspI	AATATT	1 cut(s)	376
SspMI	CTAG	3 cut(s)	293, 468, 981
SstI	GAGCTC	2 cut(s)	353, 1167
StuI	AGGCCT	1 cut(s)	472
StyD4I	CCNGG	2 cut(s)	994, 1151
TaaI	ACNGT	3 cut(s)	427, 750, 1241
TaiI	ACGT	1 cut(s)	129
TaqI	TCGA	4 cut(s)	151, 432, 744, 1000
TasI	AATT	6 cut(s)	227, 288, 613, 873, 906, 945
TatI	WGTACW	2 cut(s)	96, 784
TauI	GCSGC	2 cut(s)	27, 529
TfiI	GAWTC	2 cut(s)	434, 1135
Tru1I	TTAA	4 cut(s)	612, 801, 1005, 1091
Tru9I	TTAA	4 cut(s)	612, 801, 1005, 1091
TseI	GCWGC	3 cut(s)	75, 575, 1047
TspDTI	ATGAA	4 cut(s)	224, 426, 672, 849
TspGWI	ACGGA	1 cut(s)	1056
Van91I	CCANNNNNTGG	1 cut(s)	908
VpaK11BI	GGWCC	1 cut(s)	1064
XapI	RAATTY	1 cut(s)	288
XbaI	TCTAGA	1 cut(s)	292
XceI	RCATGY	3 cut(s)	582, 800, 1129
XmnI	GAANNNNTTC	1 cut(s)	750
XspI	CTAG	3 cut(s)	293, 468, 981

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.