Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0005665

Physical Location & Seq

Genomic Coordinates Reverse (-)

47567512 .. 47570725

Gene Structure 3214 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG280700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1227 bp

ATGGAGTCGGAGTCGGAGGAATTCTCCGACCGCTTCGTCTGCTGCATGTGTCTGGAACTTCTGTACAAGCCTGTAGTGCTCTCCTGTGGGCACGTTTCGTGTTTCTGGTGCGTGCATCGATCCATGAGTGGTGAAAAGCAATCTCATTGCCCGCTTTGTCGGCATCCCTATAATCACTTTCCGACTATATGTCAATTGCTTCATTGTTTACTGCTCAACTCGTATCCTGTTGCTTATAAGAAGAGGGAATTGCAAATTCTAGAAGAAGAGAAGAAAACTGGCTACTTCTCACCACAGCTTGATGTTCAGGCTTGGAGCTCACAAGCTAATCAAGACTCAAATATTCCGGCCGACTCTGTAAGCAAAGAGTTGAGTGCAAATATGCAGGAAACAGTTTTCGATTCATATAATCTAAACAATGGCATAGCGGTTTCTAGGCCTACTGATGGTGGAGACTATGAGGGAATGGAGAATGTTACTGACCAAGTAAAGAATCCCCTGTTATCTCAGCAGCAGAGCGGAAGTCCCAAGCAGATTTCAGTTGCAGATGTGCTTTGTGCTGCTTGCAAAGGACTGCTGTTTCGTCCTGTGGTTCTTAACTGTGGCCATGTATATTGTGAAAGTTGTATCGTCAAACAAGATGAAAAGAAGATTAGATGTCAAGTTTGTCAAAGTTTCCATCCAACCAGATATCCAAAAGTTTGTTTGGATCTGCAAAACTTTTTGATCGAACAGTTTCCTAAAGAACTTGCACATAGAAGAGATGGTGTACAGCATAAGCATGTTAATCCAACTACATGTGAAAGCAAAAGCAGTAAAGAAGCAGAGAAGTCATCATCGGGTTCATATCACAGAGGAGTTGGCTGTGATTATTGTGGGATGTATCCGATAATTGGGGATAGATACCGGTGCAAAGATTGTGTGGAGAAAATCGGATTTGACCTTTGCAATGATTGTTATAATACTAGTTCCAAGCTTCCAGGTCGATTCAATCAGCAACATACAGCAGAACACCAATTTGAGCTTATACGCAGCGACATTAATTTAAGGATAATGAGTGAGCGGTTAGGGGATGCTTCTTTTGCTGTTTTAATGGCTCACATGTCAGGGATTCCAGAGGAAGATGCTGGGAATAGAGACCTCCCCCATGCTCCCTCCACAAATAGTGAAAATGATGAGGATGATCAAGATGGCTCTCAACCAAGTTTTCAGCACGGTGGCATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009605 GO:0009607 GO:0009620 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043207 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0050832 GO:0050896 GO:0051603 GO:0051704 GO:0051707 GO:0061630 GO:0061659 GO:0070647 GO:0071596 GO:0071704 GO:0098542 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ZZ zf-C3HC4_3 zf-C3HC4_4 zf-RING_UBOX

Protein Analysis

408

Amino Acids

45.92

Weight (kDa)

5.64

Isoelectric Point (pI)

54.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-C3HC4_3	PF13920	13 - 58	1.3e-06	Zinc finger, C3HC4 type (RING finger)
zf-C3HC4_2	PF13923	14 - 53	8e-06	Zinc finger, C3HC4 type (RING finger)
zf-RING_UBOX	PF13445	186 - 220	4.2e-07	RING-type zinc-finger
ZZ	PF00569	284 - 324	3e-07	Zinc finger, ZZ type

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005665)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G24800
fragaria_vesca	FvH4_2g19100 FvH4_2g19100 FvH4_2g19100 FvH4_6g51520
malus_domestica	MD10G1165000.v1.1
prunus_persica	Prupe.8G203400_v2.0.a1 Prupe.8G203400_v2.0.a1 Prupe.8G203400_v2.0.a1
pyrus_communis	pycom10g14220
rosa_chinensis	RchiOBHm_Chr6g0284931
rosa_laevigata	RLG00000012700 RLG00000012701
rosa_multiflora	Rmu_sc0004961.1_g000001 Rmu_sc0004961.1_g000002
rosa_roxburghii	Rroxscaffold_7G00183950 Rroxscaffold_7G00183960 Rroxscaffold_7G00184220
rosa_rugosa	Rorug06G0168600 Rorug06G0168700
rosa_samantha	Rh6AG280700 Rh6BG281000 Rh6BG281100 Rh6BG281200 Rh6BG281300 Rh6CG283000 Rh6DG276100
rosa_wichuraiana	Rw6G024120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	237, 960
AasI	GACNNNNNNGTC	1 cut(s)	35
AccBSI	CCGCTC	2 cut(s)	519, 1063
AciI	CCGC	5 cut(s)	31, 152, 428, 519, 1063
AclWI	GGATC	2 cut(s)	114, 717
AcoI	YGGCCR	2 cut(s)	348, 604
AcsI	RAATTY	2 cut(s)	20, 255
AfaI	GTAC	2 cut(s)	65, 771
AfiI	CCNNNNNNNGG	2 cut(s)	446, 893
AflIII	ACRYGT	2 cut(s)	797, 1101
AgeI	ACCGGT	1 cut(s)	906
AgsI	TTSAA	1 cut(s)	991
AhdI	GACNNNNNGTC	1 cut(s)	189
AhlI	ACTAGT	1 cut(s)	965
AjnI	CCWGG	1 cut(s)	979
AluBI	AGCT	5 cut(s)	298, 318, 326, 976, 1024
AluI	AGCT	5 cut(s)	298, 318, 326, 976, 1024
Alw21I	GWGCWC	2 cut(s)	81, 320
Alw26I	GTCTC	2 cut(s)	447, 1131
AlwI	GGATC	2 cut(s)	114, 717
AoxI	GGCC	3 cut(s)	348, 437, 604
ApeKI	GCWGC	4 cut(s)	42, 511, 560, 1032
ApoI	RAATTY	2 cut(s)	20, 255
ArsI	GACNNNNNNTTYG	2 cut(s)	564, 596
AseI	ATTAAT	1 cut(s)	1041
AsiGI	ACCGGT	1 cut(s)	906
Asp700I	GAANNNNTTC	1 cut(s)	735
AsuHPI	GGTGA	2 cut(s)	143, 282
BaeGI	GKGCMC	1 cut(s)	93
BalI	TGGCCA	1 cut(s)	606
BanII	GRGCYC	1 cut(s)	320
Bbv12I	GWGCWC	2 cut(s)	81, 320
BbvI	GCAGC	4 cut(s)	29, 523, 547, 1044
BccI	CCATC	4 cut(s)	440, 687, 758, 1184
BciT130I	CCWGG	1 cut(s)	981
BciVI	GTATCC	2 cut(s)	234, 894
BclI	TGATCA	1 cut(s)	1183
BcoDI	GTCTC	2 cut(s)	447, 1131
BcuI	ACTAGT	1 cut(s)	965
BfaI	CTAG	3 cut(s)	260, 435, 966
BfmI	CTRYAG	1 cut(s)	72
BfuI	GTATCC	2 cut(s)	234, 894
BisI	GCNGC	4 cut(s)	43, 512, 561, 1033
BlsI	GCNGC	4 cut(s)	44, 513, 562, 1034
Bme1390I	CCNGG	1 cut(s)	981
BmeRI	GACNNNNNGTC	1 cut(s)	189
BmrFI	CCNGG	1 cut(s)	981
BmsI	GCATC	4 cut(s)	124, 172, 1063, 1114
BplI	GAGNNNNNCTC	2 cut(s)	8, 40
Bsa29I	ATCGAT	1 cut(s)	118
BsaI	GGTCTC	1 cut(s)	1131
BsaWI	WCCGGW	1 cut(s)	906
BsaXI	ACNNNNNCTCC	1 cut(s)	26
Bsc4I	CCNNNNNNNGG	2 cut(s)	446, 893
Bse118I	RCCGGY	1 cut(s)	906
Bse1I	ACTGG	1 cut(s)	283
Bse3DI	GCAATG	2 cut(s)	145, 955
BseBI	CCWGG	1 cut(s)	981
BseCI	ATCGAT	1 cut(s)	118
BseGI	GGATG	5 cut(s)	163, 679, 885, 1078, 1186
BseLI	CCNNNNNNNGG	2 cut(s)	446, 893
BseMI	GCAATG	2 cut(s)	145, 955
BseMII	CTCAG	1 cut(s)	521
BseNI	ACTGG	1 cut(s)	283
BseRI	GAGGAG	1 cut(s)	870
BseSI	GKGCMC	1 cut(s)	93
BseX3I	CGGCCG	1 cut(s)	348
BseXI	GCAGC	4 cut(s)	29, 523, 547, 1044
BseYI	CCCAGC	1 cut(s)	1127
Bsh1285I	CGRYCG	2 cut(s)	31, 351
BshFI	GGCC	3 cut(s)	350, 439, 606
BshTI	ACCGGT	1 cut(s)	906
BshVI	ATCGAT	1 cut(s)	118
BsiEI	CGRYCG	2 cut(s)	31, 351
BsiHKAI	GWGCWC	2 cut(s)	81, 320
BsiSI	CCGG	2 cut(s)	347, 907
BslFI	GGGAC	1 cut(s)	510
BslI	CCNNNNNNNGG	2 cut(s)	446, 893
BsmAI	GTCTC	2 cut(s)	447, 1131
BsmFI	GGGAC	1 cut(s)	510
BsnI	GGCC	3 cut(s)	350, 439, 606
Bso31I	GGTCTC	1 cut(s)	1131
Bsp1286I	GDGCHC	3 cut(s)	81, 93, 320
Bsp1407I	TGTACA	2 cut(s)	63, 769
Bsp143I	GATC	4 cut(s)	119, 709, 726, 1183
BspACI	CCGC	5 cut(s)	31, 152, 428, 519, 1063
BspANI	GGCC	3 cut(s)	350, 439, 606
BspCNI	CTCAG	1 cut(s)	520
BspDI	ATCGAT	1 cut(s)	118
BspPI	GGATC	2 cut(s)	114, 717
BspTNI	GGTCTC	1 cut(s)	1131
BsrBI	CCGCTC	2 cut(s)	519, 1063
BsrDI	GCAATG	2 cut(s)	145, 955
BsrFI	RCCGGY	1 cut(s)	906
BsrGI	TGTACA	2 cut(s)	63, 769
BsrI	ACTGG	1 cut(s)	283
BssAI	RCCGGY	1 cut(s)	906
BssMI	GATC	4 cut(s)	119, 709, 726, 1183
Bst2UI	CCWGG	1 cut(s)	981
Bst4CI	ACNGT	4 cut(s)	394, 602, 735, 1217
Bst6I	CTCTTC	3 cut(s)	236, 261, 754
BstAUI	TGTACA	2 cut(s)	63, 769
BstC8I	GCNNGC	3 cut(s)	113, 152, 565
BstDEI	CTNAG	1 cut(s)	507
BstF5I	GGATG	5 cut(s)	163, 679, 885, 1078, 1186
BstKTI	GATC	4 cut(s)	122, 712, 729, 1186
BstMAI	GTCTC	2 cut(s)	447, 1131
BstMBI	GATC	4 cut(s)	119, 709, 726, 1183
BstMCI	CGRYCG	2 cut(s)	31, 351
BstMWI	GCNNNNNNNGC	4 cut(s)	39, 76, 160, 1082
BstNI	CCWGG	1 cut(s)	981
BstNSI	RCATGY	4 cut(s)	49, 785, 801, 1105
BstSCI	CCNGG	1 cut(s)	979
BstSFI	CTRYAG	1 cut(s)	72
BstSLI	GKGCMC	1 cut(s)	93
BstV1I	GCAGC	4 cut(s)	29, 523, 547, 1044
BstX2I	RGATCY	1 cut(s)	709
BstYI	RGATCY	1 cut(s)	709
BstZI	CGGCCG	1 cut(s)	348
Bsu15I	ATCGAT	1 cut(s)	118
BsuI	GTATCC	2 cut(s)	234, 894
BsuRI	GGCC	3 cut(s)	350, 439, 606
BsuTUI	ATCGAT	1 cut(s)	118
BtsCI	GGATG	5 cut(s)	163, 679, 885, 1078, 1186
Cac8I	GCNNGC	3 cut(s)	113, 152, 565
Cfr10I	RCCGGY	1 cut(s)	906
ClaI	ATCGAT	1 cut(s)	118
Csp6I	GTAC	2 cut(s)	64, 770
CspAI	ACCGGT	1 cut(s)	906
CviAII	CATG	7 cut(s)	46, 124, 608, 782, 798, 1102, 1148
CviQI	GTAC	2 cut(s)	64, 770
DdeI	CTNAG	1 cut(s)	507
DpnI	GATC	4 cut(s)	121, 711, 728, 1185
DpnII	GATC	4 cut(s)	119, 709, 726, 1183
DrdI	GACNNNNNNGTC	1 cut(s)	35
DriI	GACNNNNNGTC	1 cut(s)	189
DseDI	GACNNNNNNGTC	1 cut(s)	35
EaeI	YGGCCR	2 cut(s)	348, 604
EagI	CGGCCG	1 cut(s)	348
Eam1104I	CTCTTC	3 cut(s)	236, 261, 754
Eam1105I	GACNNNNNGTC	1 cut(s)	189
EarI	CTCTTC	3 cut(s)	236, 261, 754
Ecl136II	GAGCTC	1 cut(s)	318
EclXI	CGGCCG	1 cut(s)	348
Eco147I	AGGCCT	1 cut(s)	439
Eco24I	GRGCYC	1 cut(s)	320
Eco31I	GGTCTC	1 cut(s)	1131
Eco32I	GATATC	1 cut(s)	692
Eco52I	CGGCCG	1 cut(s)	348
Eco53kI	GAGCTC	1 cut(s)	318
EcoICRI	GAGCTC	1 cut(s)	318
EcoRI	GAATTC	1 cut(s)	20
EcoRII	CCWGG	1 cut(s)	979
EcoRV	GATATC	1 cut(s)	692
EcoT38I	GRGCYC	1 cut(s)	320
FaeI	CATG	7 cut(s)	49, 127, 611, 785, 801, 1105, 1151
FaqI	GGGAC	1 cut(s)	510
FatI	CATG	7 cut(s)	45, 123, 607, 781, 797, 1101, 1147
FauI	CCCGC	1 cut(s)	159
FbaI	TGATCA	1 cut(s)	1183
Fnu4HI	GCNGC	4 cut(s)	43, 512, 561, 1033
FokI	GGATG	5 cut(s)	150, 666, 892, 1085, 1193
FriOI	GRGCYC	1 cut(s)	320
Fsp4HI	GCNGC	4 cut(s)	43, 512, 561, 1033
FspBI	CTAG	3 cut(s)	260, 435, 966
GluI	GCNGC	4 cut(s)	43, 512, 561, 1033
GsaI	CCCAGC	1 cut(s)	1131
HaeIII	GGCC	3 cut(s)	350, 439, 606
HapII	CCGG	2 cut(s)	347, 907
Hin1II	CATG	7 cut(s)	49, 127, 611, 785, 801, 1105, 1151
HindIII	AAGCTT	1 cut(s)	974
HinfI	GANTC	8 cut(s)	5, 11, 335, 353, 401, 493, 987, 1111
HpaII	CCGG	2 cut(s)	347, 907
HphI	GGTGA	2 cut(s)	143, 282
Hpy166II	GTNNAC	2 cut(s)	209, 770
Hpy188I	TCNGA	6 cut(s)	10, 16, 28, 183, 888, 935
Hpy188III	TCNNGA	5 cut(s)	53, 260, 332, 1115, 1187
Hpy8I	GTNNAC	2 cut(s)	209, 770
HpyCH4III	ACNGT	4 cut(s)	394, 602, 735, 1217
HpyCH4IV	ACGT	1 cut(s)	93
HpyF10VI	GCNNNNNNNGC	4 cut(s)	39, 76, 160, 1082
HpyF3I	CTNAG	1 cut(s)	507
HpySE526I	ACGT	1 cut(s)	93
Hsp92II	CATG	7 cut(s)	49, 127, 611, 785, 801, 1105, 1151
Ksp22I	TGATCA	1 cut(s)	1183
Kzo9I	GATC	4 cut(s)	119, 709, 726, 1183
LmnI	GCTCC	2 cut(s)	315, 1156
Lsp1109I	GCAGC	4 cut(s)	29, 523, 547, 1044
LweI	GCATC	4 cut(s)	124, 172, 1063, 1114
MaeI	CTAG	3 cut(s)	260, 435, 966
MaeII	ACGT	1 cut(s)	93
MaeIII	GTNAC	1 cut(s)	475
MalI	GATC	4 cut(s)	121, 711, 728, 1185
MbiI	CCGCTC	2 cut(s)	519, 1063
MboI	GATC	4 cut(s)	119, 709, 726, 1183
MboII	GAAGA	7 cut(s)	253, 275, 278, 283, 661, 771, 1133
MfeI	CAATTG	1 cut(s)	194
MflI	RGATCY	1 cut(s)	709
MhlI	GDGCHC	3 cut(s)	81, 93, 320
MlsI	TGGCCA	1 cut(s)	606
MluCI	AATT	7 cut(s)	20, 194, 248, 255, 891, 1016, 1042
MluNI	TGGCCA	1 cut(s)	606
MlyI	GAGTC	4 cut(s)	14, 20, 329, 347
MmeI	TCCRAC	4 cut(s)	51, 206, 707, 815
MnlI	CCTC	8 cut(s)	10, 237, 454, 848, 1111, 1151, 1165, 1171
Mox20I	TGGCCA	1 cut(s)	606
MroXI	GAANNNNTTC	1 cut(s)	735
MscI	TGGCCA	1 cut(s)	606
MseI	TTAA	5 cut(s)	597, 786, 1041, 1046, 1091
MslI	CAYNNNNRTG	1 cut(s)	780
Msp20I	TGGCCA	1 cut(s)	606
MspI	CCGG	2 cut(s)	347, 907
MspR9I	CCNGG	1 cut(s)	981
MunI	CAATTG	1 cut(s)	194
MvaI	CCWGG	1 cut(s)	981
MwoI	GCNNNNNNNGC	4 cut(s)	39, 76, 160, 1082
NdeII	GATC	4 cut(s)	119, 709, 726, 1183
NlaIII	CATG	7 cut(s)	49, 127, 611, 785, 801, 1105, 1151
NspI	RCATGY	4 cut(s)	49, 785, 801, 1105
PceI	AGGCCT	1 cut(s)	439
PciI	ACATGT	2 cut(s)	797, 1101
PdmI	GAANNNNTTC	1 cut(s)	735
PfeI	GAWTC	4 cut(s)	401, 493, 987, 1111
PinAI	ACCGGT	1 cut(s)	906
PkrI	GCNGC	4 cut(s)	44, 513, 562, 1034
PleI	GAGTC	4 cut(s)	13, 19, 329, 347
PpsI	GAGTC	4 cut(s)	13, 19, 329, 347
PscI	ACATGT	2 cut(s)	797, 1101
PshBI	ATTAAT	1 cut(s)	1041
PsiI	TTATAA	2 cut(s)	237, 960
Psp124BI	GAGCTC	1 cut(s)	320
Psp6I	CCWGG	1 cut(s)	979
PspFI	CCCAGC	1 cut(s)	1127
PspGI	CCWGG	1 cut(s)	979
PsuI	RGATCY	1 cut(s)	709
RsaI	GTAC	2 cut(s)	65, 771
RsaNI	GTAC	2 cut(s)	64, 770
RseI	CAYNNNNRTG	1 cut(s)	780
SacI	GAGCTC	1 cut(s)	320
SaqAI	TTAA	5 cut(s)	597, 786, 1041, 1046, 1091
SatI	GCNGC	4 cut(s)	43, 512, 561, 1033
Sau3AI	GATC	4 cut(s)	119, 709, 726, 1183
SchI	GAGTC	4 cut(s)	14, 20, 329, 347
ScrFI	CCNGG	1 cut(s)	981
SduI	GDGCHC	3 cut(s)	81, 93, 320
SetI	ASST	9 cut(s)	96, 300, 320, 328, 945, 978, 985, 1026, 1143
SfaNI	GCATC	4 cut(s)	124, 172, 1063, 1114
SfcI	CTRYAG	1 cut(s)	72
SmiMI	CAYNNNNRTG	1 cut(s)	780
SpeI	ACTAGT	1 cut(s)	965
Sse9I	AATT	7 cut(s)	20, 194, 248, 255, 891, 1016, 1042
SseBI	AGGCCT	1 cut(s)	439
SsiI	CCGC	5 cut(s)	31, 152, 428, 519, 1063
SspI	AATATT	1 cut(s)	343
SspMI	CTAG	3 cut(s)	260, 435, 966
SstI	GAGCTC	1 cut(s)	320
StuI	AGGCCT	1 cut(s)	439
StyD4I	CCNGG	1 cut(s)	979
TaaI	ACNGT	4 cut(s)	394, 602, 735, 1217
TaiI	ACGT	1 cut(s)	96
TaqI	TCGA	4 cut(s)	118, 399, 729, 985
TasI	AATT	7 cut(s)	20, 194, 248, 255, 891, 1016, 1042
TatI	WGTACW	2 cut(s)	63, 769
TfiI	GAWTC	4 cut(s)	401, 493, 987, 1111
Tru1I	TTAA	5 cut(s)	597, 786, 1041, 1046, 1091
Tru9I	TTAA	5 cut(s)	597, 786, 1041, 1046, 1091
TseI	GCWGC	4 cut(s)	42, 511, 560, 1032
TspDTI	ATGAA	4 cut(s)	191, 393, 657, 834
VspI	ATTAAT	1 cut(s)	1041
XapI	RAATTY	2 cut(s)	20, 255
XbaI	TCTAGA	1 cut(s)	259
XceI	RCATGY	4 cut(s)	49, 785, 801, 1105
XmnI	GAANNNNTTC	1 cut(s)	735
XspI	CTAG	3 cut(s)	260, 435, 966

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.