Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0005665

Physical Location & Seq

Genomic Coordinates Forward (+)

23134266 .. 23136937

Gene Structure 2672 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00183960.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1029 bp

ATGAGTGGTGAAAAGCAATCTCATTGCCCGCTTTGTAGGCATCCCTATAATCACTTTCCGACTATATGTCAATTGCTTCATTGTTTACTGCTCAAGTTGTATCCCGTTGCCTATAAGAAGAGGGAATTGCAAATTCTAGAAGAAGAGGAGAAAACTGGCTACTTCTCACCACAGTTTGATGTTCAGGCTTGGAGCTCACAAGCTAATCAAGACTCGAATATTCTGGGTGATTCGGTAAGCAAAGATTTGAGTGCAAATGTGGAGAAAACAGTTTTCGATTCATATAATCAACACAATGGCATAGCCGTTTCTAGGCCTACTGATGGTGGAGACTATGAGGGAATGGAGAATGTTACTGATCAAGTAAAGAATCCCATGTTATGCCAGCAGCGGAGTGGAAGCCCCAAGCAGATTTCAGTTGCAGATGTGCTATGTGCTGCATGCAAAGAACTGCTGTTTCATCCTGTGGTTCTTAACTGTGGCCATGTGTATTGTGAAAGTTGTATCGTCAGGCAAGATGAAGCGAAGATTAGATGTCAAGTTTGTCAAAGTTTCCATCCAACCAGATATCCAAAAGTTTGTGAGGATCTGCAAAACTTTTTGGTCGAACAGTATCCTAAAGAACTTGCACATAGCAGAGATGGTGTACAGCTTAAGCATGTTAATCCAACTGCATGTGAGAGCAAAAGCAGTAAAGAAGCAGAGAAGTCATCATCGGGTTCATATCACATAGGAGTTGGCTGTGATTATTGTGGGATGTATCCGATAATTGGGGATAGATACCGGTGCAAAGATTGTGTGGAGAAAATTGGATTTGACCTTTGCAATGATTGTTATAATACTAGTTCCAAGCTTCCACGTCGATTTAATCAGCAACATACAGCAGAACACCAGTTTGAGCTTATACGCGGGATTCCAGAGGAAGATGCCGGGAATAGAGAGCTTCCCCATGCTACCTCCACCAATAGTGAAAATGATGAGGATGATCAAGATGACTCTCAACCAAGTTTTCAGCACGGTGGCATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009605 GO:0009607 GO:0009620 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043207 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0050832 GO:0050896 GO:0051603 GO:0051704 GO:0051707 GO:0061630 GO:0061659 GO:0070647 GO:0071596 GO:0071704 GO:0098542 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ZZ zf-C3HC4_3 zf-C3HC4_4 zf-RING_UBOX

Protein Analysis

342

Amino Acids

38.58

Weight (kDa)

5.44

Isoelectric Point (pI)

48.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_UBOX	PF13445	145 - 179	5.8e-07	RING-type zinc-finger
ZZ	PF00569	244 - 283	7.1e-07	Zinc finger, ZZ type

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005665)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G24800
fragaria_vesca	FvH4_2g19100 FvH4_2g19100 FvH4_2g19100 FvH4_6g51520
malus_domestica	MD10G1165000.v1.1
prunus_persica	Prupe.8G203400_v2.0.a1 Prupe.8G203400_v2.0.a1 Prupe.8G203400_v2.0.a1
pyrus_communis	pycom10g14220
rosa_chinensis	RchiOBHm_Chr6g0284931
rosa_laevigata	RLG00000012700 RLG00000012701
rosa_multiflora	Rmu_sc0004961.1_g000001 Rmu_sc0004961.1_g000002
rosa_roxburghii	Rroxscaffold_7G00183950 Rroxscaffold_7G00183960 Rroxscaffold_7G00184220
rosa_rugosa	Rorug06G0168600 Rorug06G0168700
rosa_samantha	Rh6AG280700 Rh6BG281000 Rh6BG281100 Rh6BG281200 Rh6BG281300 Rh6CG283000 Rh6DG276100
rosa_wichuraiana	Rw6G024120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	837
AccII	CGCG	1 cut(s)	909
AciI	CCGC	3 cut(s)	29, 391, 909
AclWI	GGATC	1 cut(s)	594
AcoI	YGGCCR	1 cut(s)	481
AcsI	RAATTY	1 cut(s)	132
AfaI	GTAC	1 cut(s)	648
AfiI	CCNNNNNNNGG	3 cut(s)	312, 323, 770
AflII	CTTAAG	1 cut(s)	653
AgeI	ACCGGT	1 cut(s)	783
AhdI	GACNNNNNGTC	1 cut(s)	66
AhlI	ACTAGT	1 cut(s)	842
AjiI	CACGTC	1 cut(s)	860
AluBI	AGCT	6 cut(s)	195, 203, 652, 853, 901, 943
AluI	AGCT	6 cut(s)	195, 203, 652, 853, 901, 943
Alw21I	GWGCWC	1 cut(s)	197
Alw26I	GTCTC	1 cut(s)	324
AlwI	GGATC	1 cut(s)	594
AoxI	GGCC	2 cut(s)	314, 481
ApeKI	GCWGC	2 cut(s)	388, 437
ApoI	RAATTY	1 cut(s)	132
AsiGI	ACCGGT	1 cut(s)	783
AsuC2I	CCSGG	1 cut(s)	931
AsuHPI	GGTGA	3 cut(s)	20, 159, 239
BalI	TGGCCA	1 cut(s)	483
BanII	GRGCYC	1 cut(s)	197
Bbv12I	GWGCWC	1 cut(s)	197
BbvI	GCAGC	2 cut(s)	400, 424
BccI	CCATC	3 cut(s)	317, 564, 635
BceAI	ACGGC	1 cut(s)	290
BciVI	GTATCC	3 cut(s)	111, 624, 771
BclI	TGATCA	2 cut(s)	358, 985
BcnI	CCSGG	1 cut(s)	931
BcoDI	GTCTC	1 cut(s)	324
BcuI	ACTAGT	1 cut(s)	842
BfaI	CTAG	3 cut(s)	137, 312, 843
BfrI	CTTAAG	1 cut(s)	653
BfuI	GTATCC	3 cut(s)	111, 624, 771
BisI	GCNGC	2 cut(s)	389, 438
BlsI	GCNGC	2 cut(s)	390, 439
Bme1390I	CCNGG	1 cut(s)	931
BmeRI	GACNNNNNGTC	1 cut(s)	66
BmgBI	CACGTC	1 cut(s)	860
BmrFI	CCNGG	1 cut(s)	931
BmsI	GCATC	2 cut(s)	49, 916
BpuEI	CTTGAG	1 cut(s)	77
BpuMI	CCSGG	1 cut(s)	931
BsaWI	WCCGGW	1 cut(s)	783
Bsc4I	CCNNNNNNNGG	3 cut(s)	312, 323, 770
Bse118I	RCCGGY	1 cut(s)	783
Bse1I	ACTGG	2 cut(s)	160, 892
Bse3DI	GCAATG	2 cut(s)	22, 832
BseGI	GGATG	5 cut(s)	40, 460, 556, 762, 988
BseLI	CCNNNNNNNGG	3 cut(s)	312, 323, 770
BseMI	GCAATG	2 cut(s)	22, 832
BseNI	ACTGG	2 cut(s)	160, 892
BseRI	GAGGAG	1 cut(s)	161
BseXI	GCAGC	2 cut(s)	400, 424
Bsh1236I	CGCG	1 cut(s)	909
BshFI	GGCC	2 cut(s)	316, 483
BshTI	ACCGGT	1 cut(s)	783
BsiHKAI	GWGCWC	1 cut(s)	197
BsiSI	CCGG	2 cut(s)	784, 930
BslI	CCNNNNNNNGG	3 cut(s)	312, 323, 770
BsmAI	GTCTC	1 cut(s)	324
BsnI	GGCC	2 cut(s)	316, 483
Bsp1286I	GDGCHC	1 cut(s)	197
Bsp1407I	TGTACA	1 cut(s)	646
Bsp143I	GATC	3 cut(s)	358, 586, 985
BspACI	CCGC	3 cut(s)	29, 391, 909
BspANI	GGCC	2 cut(s)	316, 483
BspFNI	CGCG	1 cut(s)	909
BspPI	GGATC	1 cut(s)	594
BspTI	CTTAAG	1 cut(s)	653
BsrDI	GCAATG	2 cut(s)	22, 832
BsrFI	RCCGGY	1 cut(s)	783
BsrGI	TGTACA	1 cut(s)	646
BsrI	ACTGG	2 cut(s)	160, 892
BssAI	RCCGGY	1 cut(s)	783
BssMI	GATC	3 cut(s)	358, 586, 985
Bst4CI	ACNGT	5 cut(s)	174, 271, 479, 612, 1019
Bst6I	CTCTTC	2 cut(s)	113, 138
BstAFI	CTTAAG	1 cut(s)	653
BstAUI	TGTACA	1 cut(s)	646
BstC8I	GCNNGC	3 cut(s)	29, 386, 442
BstF5I	GGATG	5 cut(s)	40, 460, 556, 762, 988
BstFNI	CGCG	1 cut(s)	909
BstKTI	GATC	3 cut(s)	361, 589, 988
BstMAI	GTCTC	1 cut(s)	324
BstMBI	GATC	3 cut(s)	358, 586, 985
BstMWI	GCNNNNNNNGC	1 cut(s)	37
BstNSI	RCATGY	3 cut(s)	444, 662, 678
BstSCI	CCNGG	1 cut(s)	929
BstUI	CGCG	1 cut(s)	909
BstV1I	GCAGC	2 cut(s)	400, 424
BstX2I	RGATCY	1 cut(s)	586
BstYI	RGATCY	1 cut(s)	586
BsuI	GTATCC	3 cut(s)	111, 624, 771
BsuRI	GGCC	2 cut(s)	316, 483
BtrI	CACGTC	1 cut(s)	860
BtsCI	GGATG	5 cut(s)	40, 460, 556, 762, 988
Cac8I	GCNNGC	3 cut(s)	29, 386, 442
Cfr10I	RCCGGY	1 cut(s)	783
Csp6I	GTAC	1 cut(s)	647
CspAI	ACCGGT	1 cut(s)	783
CviAII	CATG	6 cut(s)	376, 441, 485, 659, 675, 950
CviQI	GTAC	1 cut(s)	647
DpnI	GATC	3 cut(s)	360, 588, 987
DpnII	GATC	3 cut(s)	358, 586, 985
DriI	GACNNNNNGTC	1 cut(s)	66
EaeI	YGGCCR	1 cut(s)	481
Eam1104I	CTCTTC	2 cut(s)	113, 138
Eam1105I	GACNNNNNGTC	1 cut(s)	66
EarI	CTCTTC	2 cut(s)	113, 138
Ecl136II	GAGCTC	1 cut(s)	195
Eco147I	AGGCCT	1 cut(s)	316
Eco24I	GRGCYC	1 cut(s)	197
Eco32I	GATATC	1 cut(s)	569
Eco53kI	GAGCTC	1 cut(s)	195
EcoICRI	GAGCTC	1 cut(s)	195
EcoRV	GATATC	1 cut(s)	569
EcoT38I	GRGCYC	1 cut(s)	197
FaeI	CATG	6 cut(s)	379, 444, 488, 662, 678, 953
FatI	CATG	6 cut(s)	375, 440, 484, 658, 674, 949
FauI	CCCGC	2 cut(s)	36, 902
FbaI	TGATCA	2 cut(s)	358, 985
Fnu4HI	GCNGC	2 cut(s)	389, 438
FokI	GGATG	5 cut(s)	27, 447, 543, 769, 995
FriOI	GRGCYC	1 cut(s)	197
Fsp4HI	GCNGC	2 cut(s)	389, 438
FspBI	CTAG	3 cut(s)	137, 312, 843
GluI	GCNGC	2 cut(s)	389, 438
HaeIII	GGCC	2 cut(s)	316, 483
HapII	CCGG	2 cut(s)	784, 930
Hin1II	CATG	6 cut(s)	379, 444, 488, 662, 678, 953
HindIII	AAGCTT	1 cut(s)	851
HinfI	GANTC	6 cut(s)	212, 230, 278, 370, 913, 995
HpaII	CCGG	2 cut(s)	784, 930
HphI	GGTGA	3 cut(s)	20, 159, 239
Hpy166II	GTNNAC	2 cut(s)	86, 647
Hpy188I	TCNGA	2 cut(s)	60, 765
Hpy188III	TCNNGA	4 cut(s)	137, 209, 917, 989
Hpy8I	GTNNAC	2 cut(s)	86, 647
Hpy99I	CGWCG	1 cut(s)	864
HpyCH4III	ACNGT	5 cut(s)	174, 271, 479, 612, 1019
HpyCH4IV	ACGT	1 cut(s)	859
HpyF10VI	GCNNNNNNNGC	1 cut(s)	37
HpySE526I	ACGT	1 cut(s)	859
Hsp92II	CATG	6 cut(s)	379, 444, 488, 662, 678, 953
Ksp22I	TGATCA	2 cut(s)	358, 985
Kzo9I	GATC	3 cut(s)	358, 586, 985
LmnI	GCTCC	1 cut(s)	192
Lsp1109I	GCAGC	2 cut(s)	400, 424
LweI	GCATC	2 cut(s)	49, 916
MaeI	CTAG	3 cut(s)	137, 312, 843
MaeII	ACGT	1 cut(s)	859
MaeIII	GTNAC	1 cut(s)	352
MalI	GATC	3 cut(s)	360, 588, 987
MboI	GATC	3 cut(s)	358, 586, 985
MboII	GAAGA	5 cut(s)	130, 152, 155, 538, 935
MfeI	CAATTG	1 cut(s)	71
MflI	RGATCY	1 cut(s)	586
MhlI	GDGCHC	1 cut(s)	197
MlsI	TGGCCA	1 cut(s)	483
MluCI	AATT	5 cut(s)	71, 125, 132, 768, 807
MluNI	TGGCCA	1 cut(s)	483
MlyI	GAGTC	2 cut(s)	206, 989
MmeI	TCCRAC	3 cut(s)	83, 584, 692
MnlI	CCTC	7 cut(s)	114, 139, 331, 577, 913, 967, 973
Mox20I	TGGCCA	1 cut(s)	483
MscI	TGGCCA	1 cut(s)	483
MseI	TTAA	4 cut(s)	474, 654, 663, 867
Msp20I	TGGCCA	1 cut(s)	483
MspA1I	CMGCKG	1 cut(s)	391
MspCI	CTTAAG	1 cut(s)	653
MspI	CCGG	2 cut(s)	784, 930
MspR9I	CCNGG	1 cut(s)	931
MunI	CAATTG	1 cut(s)	71
MvnI	CGCG	1 cut(s)	909
MwoI	GCNNNNNNNGC	1 cut(s)	37
NciI	CCSGG	1 cut(s)	931
NdeII	GATC	3 cut(s)	358, 586, 985
NlaIII	CATG	6 cut(s)	379, 444, 488, 662, 678, 953
NspI	RCATGY	3 cut(s)	444, 662, 678
PaeI	GCATGC	1 cut(s)	444
PceI	AGGCCT	1 cut(s)	316
PfeI	GAWTC	4 cut(s)	230, 278, 370, 913
PinAI	ACCGGT	1 cut(s)	783
PkrI	GCNGC	2 cut(s)	390, 439
PleI	GAGTC	2 cut(s)	206, 989
PpsI	GAGTC	2 cut(s)	206, 989
PsiI	TTATAA	1 cut(s)	837
Psp124BI	GAGCTC	1 cut(s)	197
PsuI	RGATCY	1 cut(s)	586
RsaI	GTAC	1 cut(s)	648
RsaNI	GTAC	1 cut(s)	647
SacI	GAGCTC	1 cut(s)	197
SaqAI	TTAA	4 cut(s)	474, 654, 663, 867
SatI	GCNGC	2 cut(s)	389, 438
Sau3AI	GATC	3 cut(s)	358, 586, 985
SchI	GAGTC	2 cut(s)	206, 989
ScrFI	CCNGG	1 cut(s)	931
SduI	GDGCHC	1 cut(s)	197
SetI	ASST	9 cut(s)	197, 205, 654, 822, 855, 862, 903, 945, 959
SfaNI	GCATC	2 cut(s)	49, 916
SmlI	CTYRAG	2 cut(s)	92, 653
SmoI	CTYRAG	2 cut(s)	92, 653
SpeI	ACTAGT	1 cut(s)	842
SphI	GCATGC	1 cut(s)	444
Sse9I	AATT	5 cut(s)	71, 125, 132, 768, 807
SseBI	AGGCCT	1 cut(s)	316
SsiI	CCGC	3 cut(s)	29, 391, 909
SspI	AATATT	1 cut(s)	220
SspMI	CTAG	3 cut(s)	137, 312, 843
SstI	GAGCTC	1 cut(s)	197
StuI	AGGCCT	1 cut(s)	316
StyD4I	CCNGG	1 cut(s)	929
TaaI	ACNGT	5 cut(s)	174, 271, 479, 612, 1019
TaiI	ACGT	1 cut(s)	862
TaqI	TCGA	4 cut(s)	215, 276, 606, 862
TasI	AATT	5 cut(s)	71, 125, 132, 768, 807
TatI	WGTACW	1 cut(s)	646
TfiI	GAWTC	4 cut(s)	230, 278, 370, 913
Tru1I	TTAA	4 cut(s)	474, 654, 663, 867
Tru9I	TTAA	4 cut(s)	474, 654, 663, 867
TseI	GCWGC	2 cut(s)	388, 437
TspDTI	ATGAA	5 cut(s)	68, 270, 449, 534, 711
Vha464I	CTTAAG	1 cut(s)	653
XapI	RAATTY	1 cut(s)	132
XbaI	TCTAGA	1 cut(s)	136
XceI	RCATGY	3 cut(s)	444, 662, 678
XcmI	CCANNNNNNNNNTGG	1 cut(s)	392
XspI	CTAG	3 cut(s)	137, 312, 843

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.