Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0002078

Physical Location & Seq

Genomic Coordinates Reverse (-)

17246228 .. 17248823

Gene Structure 2596 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G46830.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 654 bp

ATGACGCATAGAGTAGATCAGGAATATGATTATTTGTTTAAGATTGTGTTGATTGGTGATTCTGGTGTTGGGAAATCGAATATCTTGTCGAGATTCACCAGGAATGAGTTTTGCTTGGAATCTAAATCCACTATTGGTGTTGAATTCGCCACCAGAACTACTCAGGTTGAAGGAAAGACCATTAAGGCCCAGATCTGGGACACTGCAGGTCAGGAGAGGTACAGGGCGATCACAAGCGCGTATTACAGAGGCGCAGTGGGTGCACTTCTTGTCTACGACATTACTAAGAGACAGACCTTTGACAATGTTTTAAGGTGGCTGCGCGAACTGAGAGACCATGCAGATTCCAACATTGTGATCATGATGGCTGGGAACAAATCCGATCTGAACCACTTGAGATCCGTTGCTGAGGAAGATGGTCAAAGTTTGGCTGAGAAGGAAGGTCTCTCTTTCCTGGAGACATCTGCTCTTGAAGCAACAAACGTCGAGAAAGCGTTTCAGACCATCTTAGGTGAGATCTACCATATCATAAGCAAAAAGGCACTGGCTGCACAAGAAGCAGCAGCAGCTAATTCTGCAATCCCTGGGCAAGGAACTACGATTAACGTCGATGACACATCTGGAGGCGCGAAACGAGCATGTTGCTCTTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005829 GO:0005886 GO:0005911 GO:0009504 GO:0009506 GO:0012505 GO:0016020 GO:0030054 GO:0031410 GO:0031982 GO:0043226 GO:0043227 GO:0043229 GO:0044424 GO:0044444 GO:0044464 GO:0055044 GO:0071944 GO:0097708

KEGG Pathways

Metabolic & Signaling

ko04144 ko04152 ko04961 ko04962 ko04972 map04144 map04152 map04961 map04962 map04972

Pfam Domains

Protein Families

Ras

Protein Analysis

217

Amino Acids

23.85

Weight (kDa)

5.86

Isoelectric Point (pI)

39.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Arf	PF00025	13 - 167	2.9e-13	ADP-ribosylation factor family
Ras	PF00071	14 - 174	4.1e-62	Ras family
Roc	PF08477	14 - 128	3.9e-34	Ras of Complex, Roc, domain of DAPkinase
MMR_HSR1	PF01926	14 - 120	7.7e-06	50S ribosome-binding GTPase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002078)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G07410 AT3G46830 AT3G46830 AT5G59150 AT5G59150
fragaria_vesca	FvH4_3g37150 FvH4_7g23580 FvH4_7g23580
malus_domestica	MD01G1141600.v1.1 MD03G1084700.v1.1 MD07G1205800.v1.1 MD11G1092300.v1.1
prunus_persica	Prupe.2G241900_v2.0.a1 Prupe.2G241900_v2.0.a1 Prupe.2G241900_v2.0.a1 Prupe.6G068000_v2.0.a1
pyrus_communis	pycom01g16190 pycom03g06690 pycom07g19270
rosa_chinensis	RchiOBHm_Chr1g0368751 RchiOBHm_Chr5g0042031 RchiOBHm_Chr5g0066871
rosa_laevigata	RLG00000027191 RLG00000035884
rosa_multiflora	Rmu_co8341881.1_g000001 Rmu_sc0000605.1_g000057 Rmu_sc0001791.1_g000018 Rmu_sc0005860.1_g000001 Rmu_sc0042332.1_g000001
rosa_roxburghii	Rroxscaffold_1G00014250 Rroxscaffold_4G00288300
rosa_rugosa	Rorug01G0344800 Rorug05G0379000 Rorug05G0379000 Rorug05G0379100
rosa_samantha	Rh1AG351800 Rh1BG315500 Rh1CG330200 Rh1DG347000 Rh5AG438800 Rh5BG455700 Rh5CG477800 Rh5DG470500
rosa_wichuraiana	Rw5G041030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	197
AccI	GTMKAC	1 cut(s)	273
AccII	CGCG	3 cut(s)	239, 324, 629
AclWI	GGATC	1 cut(s)	393
AcsI	RAATTY	1 cut(s)	143
AfaI	GTAC	1 cut(s)	221
AfiI	CCNNNNNNNGG	3 cut(s)	195, 196, 590
AgsI	TTSAA	3 cut(s)	143, 170, 473
AjnI	CCWGG	3 cut(s)	98, 453, 583
AluBI	AGCT	1 cut(s)	569
AluI	AGCT	1 cut(s)	569
Alw21I	GWGCWC	1 cut(s)	265
Alw26I	GTCTC	4 cut(s)	283, 327, 449, 452
Alw44I	GTGCAC	1 cut(s)	261
AlwI	GGATC	1 cut(s)	393
AoxI	GGCC	1 cut(s)	186
ApaLI	GTGCAC	1 cut(s)	261
ApeKI	GCWGC	5 cut(s)	319, 548, 560, 563, 566
ApoI	RAATTY	1 cut(s)	143
ArsI	GACNNNNNNTTYG	2 cut(s)	71, 103
AspLEI	GCGC	4 cut(s)	239, 254, 324, 629
AspS9I	GGNCC	1 cut(s)	187
AsuHPI	GGTGA	3 cut(s)	68, 88, 524
BaeGI	GKGCMC	1 cut(s)	265
Bbv12I	GWGCWC	1 cut(s)	265
BbvCI	CCTCAGC	1 cut(s)	408
BbvI	GCAGC	5 cut(s)	306, 535, 572, 575, 578
BccI	CCATC	3 cut(s)	358, 410, 512
BcgI	CGANNNNNNTGC	1 cut(s)	624
BciT130I	CCWGG	3 cut(s)	100, 455, 585
BclI	TGATCA	1 cut(s)	357
BcoDI	GTCTC	4 cut(s)	283, 327, 449, 452
BfmI	CTRYAG	1 cut(s)	204
BfuAI	ACCTGC	1 cut(s)	197
BglII	AGATCT	2 cut(s)	192, 516
BisI	GCNGC	5 cut(s)	320, 549, 561, 564, 567
BlsI	GCNGC	5 cut(s)	321, 550, 562, 565, 568
Bme1390I	CCNGG	3 cut(s)	100, 455, 585
BmgT120I	GGNCC	1 cut(s)	187
BmrFI	CCNGG	3 cut(s)	100, 455, 585
BpmI	CTGGAG	2 cut(s)	476, 642
Bpu10I	CCTNAGC	1 cut(s)	408
BpuEI	CTTGAG	1 cut(s)	415
BsaI	GGTCTC	2 cut(s)	327, 449
BsaJI	CCNNGG	2 cut(s)	583, 584
Bsc4I	CCNNNNNNNGG	3 cut(s)	195, 196, 590
Bse1I	ACTGG	1 cut(s)	549
BseBI	CCWGG	3 cut(s)	100, 455, 585
BseDI	CCNNGG	2 cut(s)	583, 584
BseLI	CCNNNNNNNGG	3 cut(s)	195, 196, 590
BseMII	CTCAG	4 cut(s)	176, 320, 399, 423
BseNI	ACTGG	1 cut(s)	549
BseSI	GKGCMC	1 cut(s)	265
BseXI	GCAGC	5 cut(s)	306, 535, 572, 575, 578
BseYI	CCCAGC	1 cut(s)	368
BsgI	GTGCAG	1 cut(s)	534
Bsh1236I	CGCG	3 cut(s)	239, 324, 629
BshFI	GGCC	1 cut(s)	188
BsiHKAI	GWGCWC	1 cut(s)	265
BslFI	GGGAC	1 cut(s)	212
BslI	CCNNNNNNNGG	3 cut(s)	195, 196, 590
BsmAI	GTCTC	4 cut(s)	283, 327, 449, 452
BsmFI	GGGAC	1 cut(s)	212
BsnI	GGCC	1 cut(s)	188
Bso31I	GGTCTC	2 cut(s)	327, 449
Bsp1286I	GDGCHC	1 cut(s)	265
Bsp143I	GATC	7 cut(s)	16, 192, 228, 357, 382, 398, 516
BspANI	GGCC	1 cut(s)	188
BspCNI	CTCAG	4 cut(s)	175, 321, 400, 424
BspFNI	CGCG	3 cut(s)	239, 324, 629
BspHI	TCATGA	1 cut(s)	360
BspMAI	CTGCAG	1 cut(s)	208
BspMI	ACCTGC	1 cut(s)	197
BspPI	GGATC	1 cut(s)	393
BspTNI	GGTCTC	2 cut(s)	327, 449
BsrI	ACTGG	1 cut(s)	549
BssECI	CCNNGG	2 cut(s)	583, 584
BssMI	GATC	7 cut(s)	16, 192, 228, 357, 382, 398, 516
Bst2UI	CCWGG	3 cut(s)	100, 455, 585
BstAPI	GCANNNNNTGC	2 cut(s)	260, 548
BstDEI	CTNAG	6 cut(s)	162, 285, 329, 408, 432, 508
BstENI	CCTNNNNNAGG	1 cut(s)	588
BstFNI	CGCG	3 cut(s)	239, 324, 629
BstHHI	GCGC	4 cut(s)	239, 254, 324, 629
BstKTI	GATC	7 cut(s)	19, 195, 231, 360, 385, 401, 519
BstMAI	GTCTC	4 cut(s)	283, 327, 449, 452
BstMBI	GATC	7 cut(s)	16, 192, 228, 357, 382, 398, 516
BstMWI	GCNNNNNNNGC	7 cut(s)	260, 473, 548, 557, 566, 575, 635
BstNI	CCWGG	3 cut(s)	100, 455, 585
BstNSI	RCATGY	1 cut(s)	642
BstSCI	CCNGG	3 cut(s)	98, 453, 583
BstSFI	CTRYAG	1 cut(s)	204
BstSLI	GKGCMC	1 cut(s)	265
BstUI	CGCG	3 cut(s)	239, 324, 629
BstV1I	GCAGC	5 cut(s)	306, 535, 572, 575, 578
BstX2I	RGATCY	3 cut(s)	192, 398, 516
BstYI	RGATCY	3 cut(s)	192, 398, 516
BsuRI	GGCC	1 cut(s)	188
BtsI	GCAGTG	2 cut(s)	201, 261
BtsIMutI	CAGTG	3 cut(s)	201, 261, 542
BveI	ACCTGC	1 cut(s)	197
CciI	TCATGA	1 cut(s)	360
CfoI	GCGC	4 cut(s)	239, 254, 324, 629
Cfr13I	GGNCC	1 cut(s)	187
CseI	GACGC	1 cut(s)	13
Csp6I	GTAC	1 cut(s)	220
CviAII	CATG	3 cut(s)	338, 361, 639
CviJI	RGCY	6 cut(s)	188, 319, 368, 431, 548, 569
CviKI_1	RGCY	6 cut(s)	188, 319, 368, 431, 548, 569
CviQI	GTAC	1 cut(s)	220
DdeI	CTNAG	6 cut(s)	162, 285, 329, 408, 432, 508
DpnI	GATC	7 cut(s)	18, 194, 230, 359, 384, 400, 518
DpnII	GATC	7 cut(s)	16, 192, 228, 357, 382, 398, 516
Eco31I	GGTCTC	2 cut(s)	327, 449
EcoNI	CCTNNNNNAGG	1 cut(s)	588
EcoRI	GAATTC	1 cut(s)	143
EcoRII	CCWGG	3 cut(s)	98, 453, 583
FaeI	CATG	3 cut(s)	341, 364, 642
FaiI	YATR	7 cut(s)	9, 27, 339, 362, 525, 530, 640
FaqI	GGGAC	1 cut(s)	212
FatI	CATG	3 cut(s)	337, 360, 638
FbaI	TGATCA	1 cut(s)	357
FblI	GTMKAC	1 cut(s)	273
Fnu4HI	GCNGC	5 cut(s)	320, 549, 561, 564, 567
Fsp4HI	GCNGC	5 cut(s)	320, 549, 561, 564, 567
GlaI	GCGC	4 cut(s)	238, 253, 323, 628
GluI	GCNGC	5 cut(s)	320, 549, 561, 564, 567
GsaI	CCCAGC	1 cut(s)	372
GsuI	CTGGAG	2 cut(s)	476, 642
HaeIII	GGCC	1 cut(s)	188
HgaI	GACGC	1 cut(s)	13
HhaI	GCGC	4 cut(s)	239, 254, 324, 629
Hin1II	CATG	3 cut(s)	341, 364, 642
Hin6I	GCGC	4 cut(s)	237, 252, 322, 627
HinP1I	GCGC	4 cut(s)	237, 252, 322, 627
HinfI	GANTC	4 cut(s)	59, 93, 119, 344
HphI	GGTGA	3 cut(s)	68, 88, 524
Hpy166II	GTNNAC	2 cut(s)	263, 274
Hpy188I	TCNGA	3 cut(s)	382, 387, 501
Hpy188III	TCNNGA	7 cut(s)	20, 90, 212, 361, 470, 487, 621
Hpy8I	GTNNAC	2 cut(s)	263, 274
Hpy99I	CGWCG	2 cut(s)	488, 611
HpyAV	CCTTC	3 cut(s)	164, 430, 434
HpyCH4IV	ACGT	2 cut(s)	483, 606
HpyCH4V	TGCA	5 cut(s)	206, 263, 341, 551, 578
HpyF10VI	GCNNNNNNNGC	7 cut(s)	260, 473, 548, 557, 566, 575, 635
HpyF3I	CTNAG	6 cut(s)	162, 285, 329, 408, 432, 508
HpySE526I	ACGT	2 cut(s)	483, 606
Hsp92II	CATG	3 cut(s)	341, 364, 642
HspAI	GCGC	4 cut(s)	237, 252, 322, 627
Ksp22I	TGATCA	1 cut(s)	357
Kzo9I	GATC	7 cut(s)	16, 192, 228, 357, 382, 398, 516
Lsp1109I	GCAGC	5 cut(s)	306, 535, 572, 575, 578
MaeII	ACGT	2 cut(s)	483, 606
MalI	GATC	7 cut(s)	18, 194, 230, 359, 384, 400, 518
MboI	GATC	7 cut(s)	16, 192, 228, 357, 382, 398, 516
MboII	GAAGA	2 cut(s)	425, 639
MflI	RGATCY	3 cut(s)	192, 398, 516
MhlI	GDGCHC	1 cut(s)	265
MluCI	AATT	2 cut(s)	143, 571
MmeI	TCCRAC	1 cut(s)	372
MnlI	CCTC	4 cut(s)	210, 242, 403, 617
MseI	TTAA	5 cut(s)	39, 183, 311, 603, 652
MspR9I	CCNGG	3 cut(s)	100, 455, 585
MvaI	CCWGG	3 cut(s)	100, 455, 585
MvnI	CGCG	3 cut(s)	239, 324, 629
MwoI	GCNNNNNNNGC	7 cut(s)	260, 473, 548, 557, 566, 575, 635
NdeII	GATC	7 cut(s)	16, 192, 228, 357, 382, 398, 516
NlaIII	CATG	3 cut(s)	341, 364, 642
NspI	RCATGY	1 cut(s)	642
PagI	TCATGA	1 cut(s)	360
PasI	CCCWGGG	1 cut(s)	584
PfeI	GAWTC	4 cut(s)	59, 93, 119, 344
PfoI	TCCNGGA	1 cut(s)	453
PkrI	GCNGC	5 cut(s)	321, 550, 562, 565, 568
Psp6I	CCWGG	3 cut(s)	98, 453, 583
PspFI	CCCAGC	1 cut(s)	368
PspGI	CCWGG	3 cut(s)	98, 453, 583
PspPI	GGNCC	1 cut(s)	187
PstI	CTGCAG	1 cut(s)	208
PsuI	RGATCY	3 cut(s)	192, 398, 516
RsaI	GTAC	1 cut(s)	221
RsaNI	GTAC	1 cut(s)	220
SaqAI	TTAA	5 cut(s)	39, 183, 311, 603, 652
SatI	GCNGC	5 cut(s)	320, 549, 561, 564, 567
Sau3AI	GATC	7 cut(s)	16, 192, 228, 357, 382, 398, 516
Sau96I	GGNCC	1 cut(s)	187
ScrFI	CCNGG	3 cut(s)	100, 455, 585
SduI	GDGCHC	1 cut(s)	265
SfcI	CTRYAG	1 cut(s)	204
SmlI	CTYRAG	1 cut(s)	394
SmoI	CTYRAG	1 cut(s)	394
Sse9I	AATT	2 cut(s)	143, 571
StyD4I	CCNGG	3 cut(s)	98, 453, 583
TaiI	ACGT	2 cut(s)	486, 609
TaqI	TCGA	4 cut(s)	77, 89, 486, 609
TasI	AATT	2 cut(s)	143, 571
TfiI	GAWTC	4 cut(s)	59, 93, 119, 344
Tru1I	TTAA	5 cut(s)	39, 183, 311, 603, 652
Tru9I	TTAA	5 cut(s)	39, 183, 311, 603, 652
TscAI	CASTG	3 cut(s)	208, 261, 549
TseI	GCWGC	5 cut(s)	319, 548, 560, 563, 566
TspGWI	ACGGA	1 cut(s)	391
TspRI	CASTG	3 cut(s)	208, 261, 549
VneI	GTGCAC	1 cut(s)	261
XagI	CCTNNNNNAGG	1 cut(s)	588
XapI	RAATTY	1 cut(s)	143
XceI	RCATGY	1 cut(s)	642
XmiI	GTMKAC	1 cut(s)	273

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.