Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005860.1

Orthogroup ID

OG0002078

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 2980

Gene Structure 2980 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005860.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 689 bp

gtgagagagatcgggggagatcggagaggagaggctgtatggcgagcagagtggaccacgagtacgactacctgttcaagatcgtgctgatcggcgactctggagttggcaaatccaacattctctccaggttcaccagaaatgagttctgcttggagtccaagtccaccatcggcgtcgagttcgccaccagaactcttcaggttgaaggaaaaactgtcaaggcacagatctgggatacagcagggcaggagcgatatcgtgctatcaccagtgcatactatagaggggcagtgggtgctctccttgtctatgacataactaagcgcccaacatttgataatgtccaaaggtggctccgtgaattgagggaccatgcggattctaatattgtcatcatgatggctggaaataagtccgacttgaaccatcttagagctgtttcagaggatgatggtcaggccttggctgagagggaaggtctctcatttcttgagacatcagcactcgaagcaaccaatattgagaaggcatttcaaactattttaacagagatctaccatatcattagcaaaaaggcactggcagctcaggaagcagtcgcgagcactacccttcctggtcaaggaactactatcaatgttggtgatgcttctgggaatacgaaaagaggttgctgctctacataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005829 GO:0005886 GO:0005911 GO:0008150 GO:0009504 GO:0009506 GO:0009987 GO:0012505 GO:0016020 GO:0030054 GO:0031410 GO:0031982 GO:0042546 GO:0043226 GO:0043227 GO:0043229 GO:0044085 GO:0044424 GO:0044444 GO:0044464 GO:0055044 GO:0071554 GO:0071840 GO:0071944 GO:0097708

KEGG Pathways

Metabolic & Signaling

ko04144 ko04152 ko04961 ko04962 ko04972 map04144 map04152 map04961 map04962 map04972

Pfam Domains

Protein Families

Ras

Protein Analysis

228

Amino Acids

25.25

Weight (kDa)

7.15

Isoelectric Point (pI)

43.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002078)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G07410 AT3G46830 AT3G46830 AT5G59150 AT5G59150
fragaria_vesca	FvH4_3g37150 FvH4_7g23580 FvH4_7g23580
malus_domestica	MD01G1141600.v1.1 MD03G1084700.v1.1 MD07G1205800.v1.1 MD11G1092300.v1.1
prunus_persica	Prupe.2G241900_v2.0.a1 Prupe.2G241900_v2.0.a1 Prupe.2G241900_v2.0.a1 Prupe.6G068000_v2.0.a1
pyrus_communis	pycom01g16190 pycom03g06690 pycom07g19270
rosa_chinensis	RchiOBHm_Chr1g0368751 RchiOBHm_Chr5g0042031 RchiOBHm_Chr5g0066871
rosa_laevigata	RLG00000027191 RLG00000035884
rosa_multiflora	Rmu_co8341881.1_g000001 Rmu_sc0000605.1_g000057 Rmu_sc0001791.1_g000018 Rmu_sc0005860.1_g000001 Rmu_sc0042332.1_g000001
rosa_roxburghii	Rroxscaffold_1G00014250 Rroxscaffold_4G00288300
rosa_rugosa	Rorug01G0344800 Rorug05G0379000 Rorug05G0379000 Rorug05G0379100
rosa_samantha	Rh1AG351800 Rh1BG315500 Rh1CG330200 Rh1DG347000 Rh5AG438800 Rh5BG455700 Rh5CG477800 Rh5DG470500
rosa_wichuraiana	Rw5G041030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	604
AciI	CCGC	1 cut(s)	379
AcuI	CTGAAG	1 cut(s)	184
AcyI	GRCGYC	1 cut(s)	176
AfaI	GTAC	1 cut(s)	64
AfiI	CCNNNNNNNGG	1 cut(s)	625
AgsI	TTSAA	4 cut(s)	78, 208, 426, 538
AjnI	CCWGG	2 cut(s)	127, 618
AluBI	AGCT	2 cut(s)	439, 589
AluI	AGCT	2 cut(s)	439, 589
Alw21I	GWGCWC	2 cut(s)	303, 610
Alw26I	GTCTC	2 cut(s)	487, 490
AoxI	GGCC	1 cut(s)	461
ApeKI	GCWGC	2 cut(s)	586, 677
AspLEI	GCGC	1 cut(s)	329
AspS9I	GGNCC	2 cut(s)	54, 372
AsuHPI	GGTGA	3 cut(s)	126, 261, 658
AvaII	GGWCC	2 cut(s)	54, 372
BauI	CACGAG	1 cut(s)	58
Bbv12I	GWGCWC	2 cut(s)	303, 610
BbvI	GCAGC	2 cut(s)	598, 664
BccI	CCATC	4 cut(s)	178, 396, 437, 448
BciT130I	CCWGG	2 cut(s)	129, 620
BciVI	GTATCC	1 cut(s)	231
BcoDI	GTCTC	2 cut(s)	487, 490
BfmI	CTRYAG	1 cut(s)	282
BfoI	RGCGCY	1 cut(s)	330
BfuI	GTATCC	1 cut(s)	231
BglII	AGATCT	2 cut(s)	230, 554
BisI	GCNGC	2 cut(s)	587, 678
BlsI	GCNGC	2 cut(s)	588, 679
Bme1390I	CCNGG	2 cut(s)	129, 620
Bme18I	GGWCC	2 cut(s)	54, 372
BmgT120I	GGNCC	2 cut(s)	54, 372
BmiI	GGNNCC	2 cut(s)	358, 373
BmrFI	CCNGG	2 cut(s)	129, 620
BmsI	GCATC	1 cut(s)	639
BpmI	CTGGAG	2 cut(s)	111, 122
Bpu10I	CCTNAGC	1 cut(s)	590
BpuEI	CTTGAG	1 cut(s)	514
BsaHI	GRCGYC	1 cut(s)	176
BsaI	GGTCTC	1 cut(s)	487
BsaJI	CCNNGG	1 cut(s)	464
BsaXI	ACNNNNNCTCC	6 cut(s)	21, 51, 109, 139, 148, 178
Bsc4I	CCNNNNNNNGG	1 cut(s)	625
Bse1I	ACTGG	2 cut(s)	272, 587
BseBI	CCWGG	2 cut(s)	129, 620
BseDI	CCNNGG	1 cut(s)	464
BseGI	GGATG	1 cut(s)	456
BseLI	CCNNNNNNNGG	1 cut(s)	625
BseMII	CTCAG	2 cut(s)	461, 604
BseNI	ACTGG	2 cut(s)	272, 587
BseRI	GAGGAG	1 cut(s)	42
BseXI	GCAGC	2 cut(s)	598, 664
Bsh1236I	CGCG	1 cut(s)	604
BshFI	GGCC	1 cut(s)	463
BsiHKAI	GWGCWC	2 cut(s)	303, 610
BslFI	GGGAC	1 cut(s)	385
BslI	CCNNNNNNNGG	1 cut(s)	625
BsmAI	GTCTC	2 cut(s)	487, 490
BsmFI	GGGAC	1 cut(s)	385
BsnI	GGCC	1 cut(s)	463
Bso31I	GGTCTC	1 cut(s)	487
Bsp1286I	GDGCHC	2 cut(s)	303, 610
Bsp143I	GATC	6 cut(s)	9, 19, 80, 89, 230, 554
Bsp68I	TCGCGA	1 cut(s)	604
BspACI	CCGC	1 cut(s)	379
BspANI	GGCC	1 cut(s)	463
BspCNI	CTCAG	2 cut(s)	462, 603
BspFNI	CGCG	1 cut(s)	604
BspHI	TCATGA	1 cut(s)	398
BspLI	GGNNCC	2 cut(s)	358, 373
BspTNI	GGTCTC	1 cut(s)	487
BsrI	ACTGG	2 cut(s)	272, 587
BssECI	CCNNGG	1 cut(s)	464
BssMI	GATC	6 cut(s)	9, 19, 80, 89, 230, 554
BssNI	GRCGYC	1 cut(s)	176
BssSI	CACGAG	1 cut(s)	58
BssT1I	CCWWGG	1 cut(s)	464
Bst2BI	CACGAG	1 cut(s)	58
Bst2UI	CCWGG	2 cut(s)	129, 620
Bst4CI	ACNGT	1 cut(s)	219
Bst6I	CTCTTC	1 cut(s)	203
BstACI	GRCGYC	1 cut(s)	176
BstAPI	GCANNNNNTGC	1 cut(s)	298
BstC8I	GCNNGC	2 cut(s)	45, 606
BstDEI	CTNAG	4 cut(s)	323, 433, 470, 590
BstENI	CCTNNNNNAGG	1 cut(s)	623
BstF5I	GGATG	1 cut(s)	456
BstFNI	CGCG	1 cut(s)	604
BstH2I	RGCGCY	1 cut(s)	330
BstHHI	GCGC	1 cut(s)	329
BstKTI	GATC	6 cut(s)	12, 22, 83, 92, 233, 557
BstMAI	GTCTC	2 cut(s)	487, 490
BstMBI	GATC	6 cut(s)	9, 19, 80, 89, 230, 554
BstMWI	GCNNNNNNNGC	4 cut(s)	298, 511, 586, 595
BstNI	CCWGG	2 cut(s)	129, 620
BstSCI	CCNGG	2 cut(s)	127, 618
BstSFI	CTRYAG	1 cut(s)	282
BstUI	CGCG	1 cut(s)	604
BstV1I	GCAGC	2 cut(s)	598, 664
BstX2I	RGATCY	2 cut(s)	230, 554
BstYI	RGATCY	2 cut(s)	230, 554
BsuI	GTATCC	1 cut(s)	231
BsuRI	GGCC	1 cut(s)	463
BtsCI	GGATG	1 cut(s)	456
BtsI	GCAGTG	1 cut(s)	299
BtsIMutI	CAGTG	3 cut(s)	279, 299, 580
BtuMI	TCGCGA	1 cut(s)	604
Cac8I	GCNNGC	2 cut(s)	45, 606
CciI	TCATGA	1 cut(s)	398
CfoI	GCGC	1 cut(s)	329
Cfr13I	GGNCC	2 cut(s)	54, 372
CseI	GACGC	1 cut(s)	165
Csp6I	GTAC	1 cut(s)	63
CviAII	CATG	2 cut(s)	376, 399
CviJI	RGCY	7 cut(s)	35, 357, 406, 439, 463, 469, 589
CviKI_1	RGCY	7 cut(s)	35, 357, 406, 439, 463, 469, 589
CviQI	GTAC	1 cut(s)	63
DdeI	CTNAG	4 cut(s)	323, 433, 470, 590
DpnI	GATC	6 cut(s)	11, 21, 82, 91, 232, 556
DpnII	GATC	6 cut(s)	9, 19, 80, 89, 230, 554
Eam1104I	CTCTTC	1 cut(s)	203
EarI	CTCTTC	1 cut(s)	203
Eco130I	CCWWGG	1 cut(s)	464
Eco147I	AGGCCT	1 cut(s)	463
Eco31I	GGTCTC	1 cut(s)	487
Eco32I	GATATC	1 cut(s)	259
Eco47I	GGWCC	2 cut(s)	54, 372
Eco57I	CTGAAG	1 cut(s)	184
EcoNI	CCTNNNNNAGG	1 cut(s)	623
EcoRII	CCWGG	2 cut(s)	127, 618
EcoRV	GATATC	1 cut(s)	259
EcoT14I	CCWWGG	1 cut(s)	464
ErhI	CCWWGG	1 cut(s)	464
FaeI	CATG	2 cut(s)	379, 402
FaiI	YATR	9 cut(s)	40, 279, 284, 314, 319, 377, 400, 563, 687
FalI	AAGNNNNNCTT	2 cut(s)	406, 438
FaqI	GGGAC	1 cut(s)	385
FatI	CATG	2 cut(s)	375, 398
Fnu4HI	GCNGC	2 cut(s)	587, 678
FokI	GGATG	1 cut(s)	463
Fsp4HI	GCNGC	2 cut(s)	587, 678
GlaI	GCGC	1 cut(s)	328
GluI	GCNGC	2 cut(s)	587, 678
GsuI	CTGGAG	2 cut(s)	111, 122
HaeII	RGCGCY	1 cut(s)	330
HaeIII	GGCC	1 cut(s)	463
HgaI	GACGC	1 cut(s)	165
HhaI	GCGC	1 cut(s)	329
Hin1I	GRCGYC	1 cut(s)	176
Hin1II	CATG	2 cut(s)	379, 402
Hin6I	GCGC	1 cut(s)	327
HinP1I	GCGC	1 cut(s)	327
HinfI	GANTC	3 cut(s)	97, 157, 382
HphI	GGTGA	3 cut(s)	126, 261, 658
Hpy166II	GTNNAC	3 cut(s)	54, 134, 167
Hpy188I	TCNGA	3 cut(s)	24, 420, 447
Hpy188III	TCNNGA	6 cut(s)	78, 101, 399, 493, 592, 603
Hpy8I	GTNNAC	3 cut(s)	54, 134, 167
Hpy99I	CGWCG	1 cut(s)	181
HpyAV	CCTTC	4 cut(s)	202, 472, 522, 625
HpyCH4III	ACNGT	1 cut(s)	219
HpyCH4V	TGCA	1 cut(s)	277
HpyF10VI	GCNNNNNNNGC	4 cut(s)	298, 511, 586, 595
HpyF3I	CTNAG	4 cut(s)	323, 433, 470, 590
Hsp92I	GRCGYC	1 cut(s)	176
Hsp92II	CATG	2 cut(s)	379, 402
HspAI	GCGC	1 cut(s)	327
Kzo9I	GATC	6 cut(s)	9, 19, 80, 89, 230, 554
LmnI	GCTCC	2 cut(s)	252, 362
Lsp1109I	GCAGC	2 cut(s)	598, 664
LweI	GCATC	1 cut(s)	639
MalI	GATC	6 cut(s)	11, 21, 82, 91, 232, 556
MboI	GATC	6 cut(s)	9, 19, 80, 89, 230, 554
MboII	GAAGA	1 cut(s)	190
MflI	RGATCY	2 cut(s)	230, 554
MhlI	GDGCHC	2 cut(s)	303, 610
MluCI	AATT	1 cut(s)	364
MlyI	GAGTC	2 cut(s)	91, 166
MmeI	TCCRAC	2 cut(s)	140, 443
MnlI	CCTC	7 cut(s)	20, 25, 280, 362, 441, 467, 664
MseI	TTAA	1 cut(s)	547
MslI	CAYNNNNRTG	1 cut(s)	400
MspR9I	CCNGG	2 cut(s)	129, 620
MvaI	CCWGG	2 cut(s)	129, 620
MvnI	CGCG	1 cut(s)	604
MwoI	GCNNNNNNNGC	4 cut(s)	298, 511, 586, 595
NdeII	GATC	6 cut(s)	9, 19, 80, 89, 230, 554
NlaIII	CATG	2 cut(s)	379, 402
NlaIV	GGNNCC	2 cut(s)	358, 373
NruI	TCGCGA	1 cut(s)	604
PagI	TCATGA	1 cut(s)	398
PceI	AGGCCT	1 cut(s)	463
PfeI	GAWTC	1 cut(s)	382
PkrI	GCNGC	2 cut(s)	588, 679
PleI	GAGTC	2 cut(s)	91, 165
PpsI	GAGTC	2 cut(s)	91, 165
Psp6I	CCWGG	2 cut(s)	127, 618
PspGI	CCWGG	2 cut(s)	127, 618
PspN4I	GGNNCC	2 cut(s)	358, 373
PspPI	GGNCC	2 cut(s)	54, 372
PsuI	RGATCY	2 cut(s)	230, 554
RruI	TCGCGA	1 cut(s)	604
RsaI	GTAC	1 cut(s)	64
RsaNI	GTAC	1 cut(s)	63
RseI	CAYNNNNRTG	1 cut(s)	400
SaqAI	TTAA	1 cut(s)	547
SatI	GCNGC	2 cut(s)	587, 678
Sau3AI	GATC	6 cut(s)	9, 19, 80, 89, 230, 554
Sau96I	GGNCC	2 cut(s)	54, 372
SchI	GAGTC	2 cut(s)	91, 166
ScrFI	CCNGG	2 cut(s)	129, 620
SduI	GDGCHC	2 cut(s)	303, 610
SetI	ASST	8 cut(s)	74, 133, 206, 355, 441, 483, 591, 675
SfaNI	GCATC	1 cut(s)	639
SfcI	CTRYAG	1 cut(s)	282
SinI	GGWCC	2 cut(s)	54, 372
SmiMI	CAYNNNNRTG	1 cut(s)	400
SmlI	CTYRAG	1 cut(s)	493
SmoI	CTYRAG	1 cut(s)	493
Sse9I	AATT	1 cut(s)	364
SseBI	AGGCCT	1 cut(s)	463
SsiI	CCGC	1 cut(s)	379
SspI	AATATT	2 cut(s)	390, 522
StuI	AGGCCT	1 cut(s)	463
StyD4I	CCNGG	2 cut(s)	127, 618
StyI	CCWWGG	1 cut(s)	464
TaaI	ACNGT	1 cut(s)	219
TaqI	TCGA	2 cut(s)	179, 509
TasI	AATT	1 cut(s)	364
TfiI	GAWTC	1 cut(s)	382
Tru1I	TTAA	1 cut(s)	547
Tru9I	TTAA	1 cut(s)	547
TscAI	CASTG	3 cut(s)	279, 299, 587
TseI	GCWGC	2 cut(s)	586, 677
TspGWI	ACGGA	1 cut(s)	349
TspRI	CASTG	3 cut(s)	279, 299, 587
VpaK11BI	GGWCC	2 cut(s)	54, 372
XagI	CCTNNNNNAGG	1 cut(s)	623

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.