Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0002078

Physical Location & Seq

Genomic Coordinates Reverse (-)

74540657 .. 74542421

Gene Structure 1765 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG470500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 651 bp

ATGGCGAGCAGAGTGGACCACGAGTACGACTACCTGTTCAAGATCGTGCTGATCGGCGACTCTGGAGTTGGCAAATCCAACATTCTCTCCAGGTTCACCAGAAATGAGTTCTGCTTGGAGTCCAAGTCCACCATCGGCGTCGAGTTCGCCACCAGAACTCTTCAGGTTGAAGGAAAAACTGTCAAGGCACAGATCTGGGATACAGCAGGGCAGGAGCGATATCGTGCTATCACCAGTGCATACTATAGAGGGGCAGTGGGTGCTCTCCTTGTCTATGACATAACTAAGCGCCCAACATTTGATAATGTCCAAAGGTGGCTCCGTGAATTGAGGGACCATGCGGATTCTAATATTGTCATCATGATGGCTGGAAATAAGTCCGACTTGAACCATCTTAGAGCTGTTTCAGAGGATGATGGTCAGGCCTTGGCTGAGAGGGAAGGTCTCTCATTTCTTGAGACATCAGCACTCGAAGCAACCAATATTGAGAAGGCATTTCAAACTATTTTAACAGAGATCTACCATATCATTAGCAAAAAGGCACTGGCAGCTCAGGAAGCAGTCGCGAGCACTACCCTTCCTGGTCAAGGAACTACTATCAATGTTGGTGATGCTTCTGGGAATACGAAAAGAGGTTGCTGCTCTACATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005829 GO:0005886 GO:0005911 GO:0008150 GO:0009504 GO:0009506 GO:0009987 GO:0012505 GO:0016020 GO:0030054 GO:0031410 GO:0031982 GO:0042546 GO:0043226 GO:0043227 GO:0043229 GO:0044085 GO:0044424 GO:0044444 GO:0044464 GO:0055044 GO:0071554 GO:0071840 GO:0071944 GO:0097708

KEGG Pathways

Metabolic & Signaling

ko04144 ko04152 ko04961 ko04962 ko04972 map04144 map04152 map04961 map04962 map04972

Pfam Domains

Protein Families

Ras

Protein Analysis

216

Amino Acids

23.79

Weight (kDa)

6.11

Isoelectric Point (pI)

39.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Arf	PF00025	13 - 164	4e-13	ADP-ribosylation factor family
Ras	PF00071	14 - 174	1.3e-62	Ras family
Roc	PF08477	14 - 128	1.6e-34	Ras of Complex, Roc, domain of DAPkinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002078)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G07410 AT3G46830 AT3G46830 AT5G59150 AT5G59150
fragaria_vesca	FvH4_3g37150 FvH4_7g23580 FvH4_7g23580
malus_domestica	MD01G1141600.v1.1 MD03G1084700.v1.1 MD07G1205800.v1.1 MD11G1092300.v1.1
prunus_persica	Prupe.2G241900_v2.0.a1 Prupe.2G241900_v2.0.a1 Prupe.2G241900_v2.0.a1 Prupe.6G068000_v2.0.a1
pyrus_communis	pycom01g16190 pycom03g06690 pycom07g19270
rosa_chinensis	RchiOBHm_Chr1g0368751 RchiOBHm_Chr5g0042031 RchiOBHm_Chr5g0066871
rosa_laevigata	RLG00000027191 RLG00000035884
rosa_multiflora	Rmu_co8341881.1_g000001 Rmu_sc0000605.1_g000057 Rmu_sc0001791.1_g000018 Rmu_sc0005860.1_g000001 Rmu_sc0042332.1_g000001
rosa_roxburghii	Rroxscaffold_1G00014250 Rroxscaffold_4G00288300
rosa_rugosa	Rorug01G0344800 Rorug05G0379000 Rorug05G0379000 Rorug05G0379100
rosa_samantha	Rh1AG351800 Rh1BG315500 Rh1CG330200 Rh1DG347000 Rh5AG438800 Rh5BG455700 Rh5CG477800 Rh5DG470500
rosa_wichuraiana	Rw5G041030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	566
AciI	CCGC	1 cut(s)	341
AcuI	CTGAAG	1 cut(s)	146
AcyI	GRCGYC	1 cut(s)	138
AfaI	GTAC	1 cut(s)	26
AfiI	CCNNNNNNNGG	1 cut(s)	587
AgsI	TTSAA	4 cut(s)	40, 170, 388, 500
AjnI	CCWGG	2 cut(s)	89, 580
AluBI	AGCT	2 cut(s)	401, 551
AluI	AGCT	2 cut(s)	401, 551
Alw21I	GWGCWC	2 cut(s)	265, 572
Alw26I	GTCTC	2 cut(s)	449, 452
AoxI	GGCC	1 cut(s)	423
ApeKI	GCWGC	2 cut(s)	548, 639
AspLEI	GCGC	1 cut(s)	291
AspS9I	GGNCC	2 cut(s)	16, 334
AsuHPI	GGTGA	3 cut(s)	88, 223, 620
AvaII	GGWCC	2 cut(s)	16, 334
BauI	CACGAG	1 cut(s)	20
Bbv12I	GWGCWC	2 cut(s)	265, 572
BbvI	GCAGC	2 cut(s)	560, 626
BccI	CCATC	4 cut(s)	140, 358, 399, 410
BciT130I	CCWGG	2 cut(s)	91, 582
BciVI	GTATCC	1 cut(s)	193
BcoDI	GTCTC	2 cut(s)	449, 452
BfmI	CTRYAG	1 cut(s)	244
BfoI	RGCGCY	1 cut(s)	292
BfuI	GTATCC	1 cut(s)	193
BglII	AGATCT	2 cut(s)	192, 516
BisI	GCNGC	2 cut(s)	549, 640
BlsI	GCNGC	2 cut(s)	550, 641
Bme1390I	CCNGG	2 cut(s)	91, 582
Bme18I	GGWCC	2 cut(s)	16, 334
BmgT120I	GGNCC	2 cut(s)	16, 334
BmiI	GGNNCC	2 cut(s)	320, 335
BmrFI	CCNGG	2 cut(s)	91, 582
BmsI	GCATC	1 cut(s)	601
BpmI	CTGGAG	2 cut(s)	73, 84
Bpu10I	CCTNAGC	1 cut(s)	552
BpuEI	CTTGAG	1 cut(s)	476
BsaHI	GRCGYC	1 cut(s)	138
BsaI	GGTCTC	1 cut(s)	449
BsaJI	CCNNGG	1 cut(s)	426
BsaXI	ACNNNNNCTCC	4 cut(s)	71, 101, 110, 140
Bsc4I	CCNNNNNNNGG	1 cut(s)	587
Bse1I	ACTGG	2 cut(s)	234, 549
BseBI	CCWGG	2 cut(s)	91, 582
BseDI	CCNNGG	1 cut(s)	426
BseGI	GGATG	1 cut(s)	418
BseLI	CCNNNNNNNGG	1 cut(s)	587
BseMII	CTCAG	2 cut(s)	423, 566
BseNI	ACTGG	2 cut(s)	234, 549
BseXI	GCAGC	2 cut(s)	560, 626
Bsh1236I	CGCG	1 cut(s)	566
BshFI	GGCC	1 cut(s)	425
BsiHKAI	GWGCWC	2 cut(s)	265, 572
BslFI	GGGAC	1 cut(s)	347
BslI	CCNNNNNNNGG	1 cut(s)	587
BsmAI	GTCTC	2 cut(s)	449, 452
BsmFI	GGGAC	1 cut(s)	347
BsnI	GGCC	1 cut(s)	425
Bso31I	GGTCTC	1 cut(s)	449
Bsp1286I	GDGCHC	2 cut(s)	265, 572
Bsp143I	GATC	4 cut(s)	42, 51, 192, 516
Bsp68I	TCGCGA	1 cut(s)	566
BspACI	CCGC	1 cut(s)	341
BspANI	GGCC	1 cut(s)	425
BspCNI	CTCAG	2 cut(s)	424, 565
BspFNI	CGCG	1 cut(s)	566
BspHI	TCATGA	1 cut(s)	360
BspLI	GGNNCC	2 cut(s)	320, 335
BspTNI	GGTCTC	1 cut(s)	449
BsrI	ACTGG	2 cut(s)	234, 549
BssECI	CCNNGG	1 cut(s)	426
BssMI	GATC	4 cut(s)	42, 51, 192, 516
BssNI	GRCGYC	1 cut(s)	138
BssSI	CACGAG	1 cut(s)	20
BssT1I	CCWWGG	1 cut(s)	426
Bst2BI	CACGAG	1 cut(s)	20
Bst2UI	CCWGG	2 cut(s)	91, 582
Bst4CI	ACNGT	1 cut(s)	181
Bst6I	CTCTTC	1 cut(s)	165
BstACI	GRCGYC	1 cut(s)	138
BstAPI	GCANNNNNTGC	1 cut(s)	260
BstC8I	GCNNGC	2 cut(s)	7, 568
BstDEI	CTNAG	4 cut(s)	285, 395, 432, 552
BstENI	CCTNNNNNAGG	1 cut(s)	585
BstF5I	GGATG	1 cut(s)	418
BstFNI	CGCG	1 cut(s)	566
BstH2I	RGCGCY	1 cut(s)	292
BstHHI	GCGC	1 cut(s)	291
BstKTI	GATC	4 cut(s)	45, 54, 195, 519
BstMAI	GTCTC	2 cut(s)	449, 452
BstMBI	GATC	4 cut(s)	42, 51, 192, 516
BstMWI	GCNNNNNNNGC	4 cut(s)	260, 473, 548, 557
BstNI	CCWGG	2 cut(s)	91, 582
BstSCI	CCNGG	2 cut(s)	89, 580
BstSFI	CTRYAG	1 cut(s)	244
BstUI	CGCG	1 cut(s)	566
BstV1I	GCAGC	2 cut(s)	560, 626
BstX2I	RGATCY	2 cut(s)	192, 516
BstYI	RGATCY	2 cut(s)	192, 516
BsuI	GTATCC	1 cut(s)	193
BsuRI	GGCC	1 cut(s)	425
BtsCI	GGATG	1 cut(s)	418
BtsI	GCAGTG	1 cut(s)	261
BtsIMutI	CAGTG	3 cut(s)	241, 261, 542
BtuMI	TCGCGA	1 cut(s)	566
Cac8I	GCNNGC	2 cut(s)	7, 568
CciI	TCATGA	1 cut(s)	360
CfoI	GCGC	1 cut(s)	291
Cfr13I	GGNCC	2 cut(s)	16, 334
CseI	GACGC	1 cut(s)	127
Csp6I	GTAC	1 cut(s)	25
CviAII	CATG	2 cut(s)	338, 361
CviJI	RGCY	6 cut(s)	319, 368, 401, 425, 431, 551
CviKI_1	RGCY	6 cut(s)	319, 368, 401, 425, 431, 551
CviQI	GTAC	1 cut(s)	25
DdeI	CTNAG	4 cut(s)	285, 395, 432, 552
DpnI	GATC	4 cut(s)	44, 53, 194, 518
DpnII	GATC	4 cut(s)	42, 51, 192, 516
Eam1104I	CTCTTC	1 cut(s)	165
EarI	CTCTTC	1 cut(s)	165
Eco130I	CCWWGG	1 cut(s)	426
Eco147I	AGGCCT	1 cut(s)	425
Eco31I	GGTCTC	1 cut(s)	449
Eco32I	GATATC	1 cut(s)	221
Eco47I	GGWCC	2 cut(s)	16, 334
Eco57I	CTGAAG	1 cut(s)	146
EcoNI	CCTNNNNNAGG	1 cut(s)	585
EcoRII	CCWGG	2 cut(s)	89, 580
EcoRV	GATATC	1 cut(s)	221
EcoT14I	CCWWGG	1 cut(s)	426
ErhI	CCWWGG	1 cut(s)	426
FaeI	CATG	2 cut(s)	341, 364
FaiI	YATR	8 cut(s)	241, 246, 276, 281, 339, 362, 525, 649
FalI	AAGNNNNNCTT	2 cut(s)	368, 400
FaqI	GGGAC	1 cut(s)	347
FatI	CATG	2 cut(s)	337, 360
Fnu4HI	GCNGC	2 cut(s)	549, 640
FokI	GGATG	1 cut(s)	425
Fsp4HI	GCNGC	2 cut(s)	549, 640
GlaI	GCGC	1 cut(s)	290
GluI	GCNGC	2 cut(s)	549, 640
GsuI	CTGGAG	2 cut(s)	73, 84
HaeII	RGCGCY	1 cut(s)	292
HaeIII	GGCC	1 cut(s)	425
HgaI	GACGC	1 cut(s)	127
HhaI	GCGC	1 cut(s)	291
Hin1I	GRCGYC	1 cut(s)	138
Hin1II	CATG	2 cut(s)	341, 364
Hin6I	GCGC	1 cut(s)	289
HinP1I	GCGC	1 cut(s)	289
HinfI	GANTC	3 cut(s)	59, 119, 344
HphI	GGTGA	3 cut(s)	88, 223, 620
Hpy166II	GTNNAC	3 cut(s)	16, 96, 129
Hpy188I	TCNGA	2 cut(s)	382, 409
Hpy188III	TCNNGA	6 cut(s)	40, 63, 361, 455, 554, 565
Hpy8I	GTNNAC	3 cut(s)	16, 96, 129
Hpy99I	CGWCG	1 cut(s)	143
HpyAV	CCTTC	4 cut(s)	164, 434, 484, 587
HpyCH4III	ACNGT	1 cut(s)	181
HpyCH4V	TGCA	1 cut(s)	239
HpyF10VI	GCNNNNNNNGC	4 cut(s)	260, 473, 548, 557
HpyF3I	CTNAG	4 cut(s)	285, 395, 432, 552
Hsp92I	GRCGYC	1 cut(s)	138
Hsp92II	CATG	2 cut(s)	341, 364
HspAI	GCGC	1 cut(s)	289
Kzo9I	GATC	4 cut(s)	42, 51, 192, 516
LmnI	GCTCC	2 cut(s)	214, 324
Lsp1109I	GCAGC	2 cut(s)	560, 626
LweI	GCATC	1 cut(s)	601
MalI	GATC	4 cut(s)	44, 53, 194, 518
MboI	GATC	4 cut(s)	42, 51, 192, 516
MboII	GAAGA	1 cut(s)	152
MflI	RGATCY	2 cut(s)	192, 516
MhlI	GDGCHC	2 cut(s)	265, 572
MluCI	AATT	1 cut(s)	326
MlyI	GAGTC	2 cut(s)	53, 128
MmeI	TCCRAC	2 cut(s)	102, 405
MnlI	CCTC	5 cut(s)	242, 324, 403, 429, 626
MseI	TTAA	1 cut(s)	509
MslI	CAYNNNNRTG	1 cut(s)	362
MspR9I	CCNGG	2 cut(s)	91, 582
MvaI	CCWGG	2 cut(s)	91, 582
MvnI	CGCG	1 cut(s)	566
MwoI	GCNNNNNNNGC	4 cut(s)	260, 473, 548, 557
NdeII	GATC	4 cut(s)	42, 51, 192, 516
NlaIII	CATG	2 cut(s)	341, 364
NlaIV	GGNNCC	2 cut(s)	320, 335
NruI	TCGCGA	1 cut(s)	566
PagI	TCATGA	1 cut(s)	360
PceI	AGGCCT	1 cut(s)	425
PfeI	GAWTC	1 cut(s)	344
PkrI	GCNGC	2 cut(s)	550, 641
PleI	GAGTC	2 cut(s)	53, 127
PpsI	GAGTC	2 cut(s)	53, 127
Psp6I	CCWGG	2 cut(s)	89, 580
PspGI	CCWGG	2 cut(s)	89, 580
PspN4I	GGNNCC	2 cut(s)	320, 335
PspPI	GGNCC	2 cut(s)	16, 334
PsuI	RGATCY	2 cut(s)	192, 516
RruI	TCGCGA	1 cut(s)	566
RsaI	GTAC	1 cut(s)	26
RsaNI	GTAC	1 cut(s)	25
RseI	CAYNNNNRTG	1 cut(s)	362
SaqAI	TTAA	1 cut(s)	509
SatI	GCNGC	2 cut(s)	549, 640
Sau3AI	GATC	4 cut(s)	42, 51, 192, 516
Sau96I	GGNCC	2 cut(s)	16, 334
SchI	GAGTC	2 cut(s)	53, 128
ScrFI	CCNGG	2 cut(s)	91, 582
SduI	GDGCHC	2 cut(s)	265, 572
SetI	ASST	8 cut(s)	36, 95, 168, 317, 403, 445, 553, 637
SfaNI	GCATC	1 cut(s)	601
SfcI	CTRYAG	1 cut(s)	244
SinI	GGWCC	2 cut(s)	16, 334
SmiMI	CAYNNNNRTG	1 cut(s)	362
SmlI	CTYRAG	1 cut(s)	455
SmoI	CTYRAG	1 cut(s)	455
Sse9I	AATT	1 cut(s)	326
SseBI	AGGCCT	1 cut(s)	425
SsiI	CCGC	1 cut(s)	341
SspI	AATATT	2 cut(s)	352, 484
StuI	AGGCCT	1 cut(s)	425
StyD4I	CCNGG	2 cut(s)	89, 580
StyI	CCWWGG	1 cut(s)	426
TaaI	ACNGT	1 cut(s)	181
TaqI	TCGA	2 cut(s)	141, 471
TasI	AATT	1 cut(s)	326
TfiI	GAWTC	1 cut(s)	344
Tru1I	TTAA	1 cut(s)	509
Tru9I	TTAA	1 cut(s)	509
TscAI	CASTG	3 cut(s)	241, 261, 549
TseI	GCWGC	2 cut(s)	548, 639
TspGWI	ACGGA	1 cut(s)	311
TspRI	CASTG	3 cut(s)	241, 261, 549
VpaK11BI	GGWCC	2 cut(s)	16, 334
XagI	CCTNNNNNAGG	1 cut(s)	585

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.