Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0002078

Physical Location & Seq

Genomic Coordinates Reverse (-)

18361001 .. 18363606

Gene Structure 2606 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g23580.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 654 bp

ATGGCGTACAAGGTCGATCACGAATATGATTACCTCTTCAAGATTGTGTTGATTGGAGATTCGGGTGTTGGGAAGTCCAACATTCTTTCCAGGTTTACGAGGAATGAGTTTTGTTTGGAGTCCAAGTCCACCATTGGAGTTGAGTTTGCGACCAGGACATTACAGGTAGAGGGGAAGACAGTGAAAGCCCAAATATGGGACACAGCAGGTCAAGAGAGGTACCGAGCCATTACCAGTGCTTACTACAGAGGTGCTGTTGGCGCTCTATTGGTTTATGACATTACCAAAAGGCAAACGTTTGACAATGTCACAAGGTGGCTACGTGAACTCAGAGACCATGCAGACTCAAATATTGTCATTATGATGGCCGGTAACAAATCTGACCTTAATCACCTGAGAGGTGTCCCAGGAGAAGATGCTCAACTCTTGGCTGAGAAGGAAGGTCTCTCGTTCTTAGAAACTTCAGCATTGGAGGCCCATAATGTTGAGAATGCATTTCAGACAATTTTGTTGGATATATACCACATAATAAGCAAGAAAGCATTAGCAGCACAGGAGGCAGCTTCGACCACTGGACTTCCTCAAGGAACTACCATCAATGTTGCAAATTTATCCTGTGACGCGAATAAGAAAACTGCTTGTTGCTCTAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04144 ko04961 ko04962 ko04972 map04144 map04961 map04962 map04972

Pfam Domains

Protein Families

Ras

Protein Analysis

218

Amino Acids

24.0

Weight (kDa)

6.22

Isoelectric Point (pI)

38.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Arf	PF00025	13 - 131	1e-12	ADP-ribosylation factor family
Ras	PF00071	14 - 173	3.8e-61	Ras family
Roc	PF08477	14 - 128	1.5e-34	Ras of Complex, Roc, domain of DAPkinase
MMR_HSR1	PF01926	14 - 120	6.4e-06	50S ribosome-binding GTPase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002078)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G07410 AT3G46830 AT3G46830 AT5G59150 AT5G59150
fragaria_vesca	FvH4_3g37150 FvH4_7g23580 FvH4_7g23580
malus_domestica	MD01G1141600.v1.1 MD03G1084700.v1.1 MD07G1205800.v1.1 MD11G1092300.v1.1
prunus_persica	Prupe.2G241900_v2.0.a1 Prupe.2G241900_v2.0.a1 Prupe.2G241900_v2.0.a1 Prupe.6G068000_v2.0.a1
pyrus_communis	pycom01g16190 pycom03g06690 pycom07g19270
rosa_chinensis	RchiOBHm_Chr1g0368751 RchiOBHm_Chr5g0042031 RchiOBHm_Chr5g0066871
rosa_laevigata	RLG00000027191 RLG00000035884
rosa_multiflora	Rmu_co8341881.1_g000001 Rmu_sc0000605.1_g000057 Rmu_sc0001791.1_g000018 Rmu_sc0005860.1_g000001 Rmu_sc0042332.1_g000001
rosa_roxburghii	Rroxscaffold_1G00014250 Rroxscaffold_4G00288300
rosa_rugosa	Rorug01G0344800 Rorug05G0379000 Rorug05G0379000 Rorug05G0379100
rosa_samantha	Rh1AG351800 Rh1BG315500 Rh1CG330200 Rh1DG347000 Rh5AG438800 Rh5BG455700 Rh5CG477800 Rh5DG470500
rosa_wichuraiana	Rw5G041030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	197
Acc65I	GGTACC	1 cut(s)	219
AccB1I	GGYRCC	1 cut(s)	219
AccII	CGCG	1 cut(s)	623
AclI	AACGTT	1 cut(s)	296
AcoI	YGGCCR	1 cut(s)	366
AcsI	RAATTY	1 cut(s)	607
AcuI	CTGAAG	1 cut(s)	447
AdeI	CACNNNGTG	1 cut(s)	315
AfaI	GTAC	2 cut(s)	8, 221
AfiI	CCNNNNNNNGG	2 cut(s)	195, 196
AgsI	TTSAA	1 cut(s)	40
AjnI	CCWGG	3 cut(s)	89, 152, 406
AluBI	AGCT	1 cut(s)	563
AluI	AGCT	1 cut(s)	563
Alw26I	GTCTC	2 cut(s)	327, 449
AoxI	GGCC	2 cut(s)	366, 474
ApeKI	GCWGC	2 cut(s)	548, 560
ApoI	RAATTY	1 cut(s)	607
Asp718I	GGTACC	1 cut(s)	219
AspLEI	GCGC	1 cut(s)	263
AspS9I	GGNCC	1 cut(s)	475
AsuHPI	GGTGA	1 cut(s)	383
BanI	GGYRCC	1 cut(s)	219
BbsI	GAAGAC	1 cut(s)	182
BbvI	GCAGC	2 cut(s)	560, 572
BccI	CCATC	2 cut(s)	358, 602
BciT130I	CCWGG	3 cut(s)	91, 154, 408
BcoDI	GTCTC	2 cut(s)	327, 449
BfmI	CTRYAG	1 cut(s)	244
BfoI	RGCGCY	1 cut(s)	264
BfuAI	ACCTGC	1 cut(s)	197
BisI	GCNGC	2 cut(s)	549, 561
BlsI	GCNGC	2 cut(s)	550, 562
Bme1390I	CCNGG	3 cut(s)	91, 154, 408
BmgT120I	GGNCC	1 cut(s)	475
BmiI	GGNNCC	1 cut(s)	221
BmrFI	CCNGG	3 cut(s)	91, 154, 408
BmsI	GCATC	1 cut(s)	406
BpiI	GAAGAC	1 cut(s)	182
BpuEI	CTTGAG	1 cut(s)	567
BsaAI	YACGTR	1 cut(s)	323
BsaI	GGTCTC	2 cut(s)	327, 449
BsaJI	CCNNGG	1 cut(s)	406
BsaXI	ACNNNNNCTCC	2 cut(s)	110, 140
Bsc4I	CCNNNNNNNGG	2 cut(s)	195, 196
Bse118I	RCCGGY	1 cut(s)	368
Bse1I	ACTGG	2 cut(s)	234, 577
BseBI	CCWGG	3 cut(s)	91, 154, 408
BseDI	CCNNGG	1 cut(s)	406
BseLI	CCNNNNNNNGG	2 cut(s)	195, 196
BseMII	CTCAG	3 cut(s)	343, 386, 423
BseNI	ACTGG	2 cut(s)	234, 577
BseXI	GCAGC	2 cut(s)	560, 572
Bsh1236I	CGCG	1 cut(s)	623
BshFI	GGCC	2 cut(s)	368, 476
BshNI	GGYRCC	1 cut(s)	219
BsiSI	CCGG	1 cut(s)	369
BslFI	GGGAC	2 cut(s)	212, 389
BslI	CCNNNNNNNGG	2 cut(s)	195, 196
BsmAI	GTCTC	2 cut(s)	327, 449
BsmFI	GGGAC	2 cut(s)	212, 389
BsmI	GAATGC	1 cut(s)	496
BsnI	GGCC	2 cut(s)	368, 476
Bso31I	GGTCTC	2 cut(s)	327, 449
Bsp143I	GATC	1 cut(s)	16
BspANI	GGCC	2 cut(s)	368, 476
BspCNI	CTCAG	3 cut(s)	342, 387, 424
BspFNI	CGCG	1 cut(s)	623
BspLI	GGNNCC	1 cut(s)	221
BspMI	ACCTGC	1 cut(s)	197
BspT107I	GGYRCC	1 cut(s)	219
BspTNI	GGTCTC	2 cut(s)	327, 449
BsrFI	RCCGGY	1 cut(s)	368
BsrI	ACTGG	2 cut(s)	234, 577
BssAI	RCCGGY	1 cut(s)	368
BssECI	CCNNGG	1 cut(s)	406
BssMI	GATC	1 cut(s)	16
Bst2UI	CCWGG	3 cut(s)	91, 154, 408
Bst4CI	ACNGT	1 cut(s)	181
Bst6I	CTCTTC	1 cut(s)	41
BstBAI	YACGTR	1 cut(s)	323
BstDEI	CTNAG	4 cut(s)	329, 395, 432, 454
BstFNI	CGCG	1 cut(s)	623
BstH2I	RGCGCY	1 cut(s)	264
BstHHI	GCGC	1 cut(s)	263
BstKTI	GATC	1 cut(s)	19
BstMAI	GTCTC	2 cut(s)	327, 449
BstMBI	GATC	1 cut(s)	16
BstMWI	GCNNNNNNNGC	4 cut(s)	260, 473, 548, 557
BstNI	CCWGG	3 cut(s)	91, 154, 408
BstSCI	CCNGG	3 cut(s)	89, 152, 406
BstSFI	CTRYAG	1 cut(s)	244
BstUI	CGCG	1 cut(s)	623
BstV1I	GCAGC	2 cut(s)	560, 572
BstV2I	GAAGAC	1 cut(s)	182
BsuRI	GGCC	2 cut(s)	368, 476
BtsIMutI	CAGTG	3 cut(s)	186, 241, 570
BveI	ACCTGC	1 cut(s)	197
CfoI	GCGC	1 cut(s)	263
Cfr10I	RCCGGY	1 cut(s)	368
Cfr13I	GGNCC	1 cut(s)	475
CseI	GACGC	1 cut(s)	629
Csp6I	GTAC	2 cut(s)	7, 220
CviAII	CATG	1 cut(s)	338
CviJI	RGCY	7 cut(s)	188, 227, 319, 368, 431, 476, 563
CviKI_1	RGCY	7 cut(s)	188, 227, 319, 368, 431, 476, 563
CviQI	GTAC	2 cut(s)	7, 220
DdeI	CTNAG	4 cut(s)	329, 395, 432, 454
DpnI	GATC	1 cut(s)	18
DpnII	GATC	1 cut(s)	16
DraIII	CACNNNGTG	1 cut(s)	315
EaeI	YGGCCR	1 cut(s)	366
Eam1104I	CTCTTC	1 cut(s)	41
EarI	CTCTTC	1 cut(s)	41
Eco31I	GGTCTC	2 cut(s)	327, 449
Eco57I	CTGAAG	1 cut(s)	447
EcoRII	CCWGG	3 cut(s)	89, 152, 406
EcoT22I	ATGCAT	1 cut(s)	496
FaeI	CATG	1 cut(s)	341
FaiI	YATR	9 cut(s)	27, 196, 276, 339, 362, 480, 518, 520, 527
FaqI	GGGAC	2 cut(s)	212, 389
FatI	CATG	1 cut(s)	337
Fnu4HI	GCNGC	2 cut(s)	549, 561
Fsp4HI	GCNGC	2 cut(s)	549, 561
GlaI	GCGC	1 cut(s)	262
GluI	GCNGC	2 cut(s)	549, 561
HaeII	RGCGCY	1 cut(s)	264
HaeIII	GGCC	2 cut(s)	368, 476
HapII	CCGG	1 cut(s)	369
HgaI	GACGC	1 cut(s)	629
HhaI	GCGC	1 cut(s)	263
Hin1II	CATG	1 cut(s)	341
Hin6I	GCGC	1 cut(s)	261
HinP1I	GCGC	1 cut(s)	261
HinfI	GANTC	3 cut(s)	59, 119, 344
HpaII	CCGG	1 cut(s)	369
HphI	GGTGA	1 cut(s)	383
Hpy166II	GTNNAC	3 cut(s)	96, 129, 326
Hpy188I	TCNGA	3 cut(s)	332, 382, 501
Hpy188III	TCNNGA	3 cut(s)	20, 40, 212
Hpy8I	GTNNAC	3 cut(s)	96, 129, 326
HpyAV	CCTTC	2 cut(s)	430, 434
HpyCH4III	ACNGT	1 cut(s)	181
HpyCH4IV	ACGT	2 cut(s)	296, 322
HpyCH4V	TGCA	3 cut(s)	341, 494, 605
HpyF10VI	GCNNNNNNNGC	4 cut(s)	260, 473, 548, 557
HpyF3I	CTNAG	4 cut(s)	329, 395, 432, 454
HpySE526I	ACGT	2 cut(s)	296, 322
Hsp92II	CATG	1 cut(s)	341
HspAI	GCGC	1 cut(s)	261
KpnI	GGTACC	1 cut(s)	223
Kzo9I	GATC	1 cut(s)	16
Lsp1109I	GCAGC	2 cut(s)	560, 572
LweI	GCATC	1 cut(s)	406
MaeII	ACGT	2 cut(s)	296, 322
MaeIII	GTNAC	3 cut(s)	307, 371, 617
MalI	GATC	1 cut(s)	18
MboI	GATC	1 cut(s)	16
MboII	GAAGA	3 cut(s)	28, 187, 425
MluCI	AATT	2 cut(s)	504, 607
MlyI	GAGTC	2 cut(s)	128, 338
MmeI	TCCRAC	2 cut(s)	102, 492
MnlI	CCTC	9 cut(s)	44, 93, 163, 210, 242, 392, 466, 550, 591
Mph1103I	ATGCAT	1 cut(s)	496
MseI	TTAA	1 cut(s)	387
MslI	CAYNNNNRTG	2 cut(s)	24, 362
MspI	CCGG	1 cut(s)	369
MspR9I	CCNGG	3 cut(s)	91, 154, 408
Mva1269I	GAATGC	1 cut(s)	496
MvaI	CCWGG	3 cut(s)	91, 154, 408
MvnI	CGCG	1 cut(s)	623
MwoI	GCNNNNNNNGC	4 cut(s)	260, 473, 548, 557
NdeII	GATC	1 cut(s)	16
NlaIII	CATG	1 cut(s)	341
NlaIV	GGNNCC	1 cut(s)	221
NmuCI	GTSAC	2 cut(s)	307, 617
NsiI	ATGCAT	1 cut(s)	496
PctI	GAATGC	1 cut(s)	496
PfeI	GAWTC	1 cut(s)	59
PflFI	GACNNNGTC	1 cut(s)	305
PkrI	GCNGC	2 cut(s)	550, 562
PleI	GAGTC	2 cut(s)	127, 338
PpsI	GAGTC	2 cut(s)	127, 338
Ppu21I	YACGTR	1 cut(s)	323
Psp1406I	AACGTT	1 cut(s)	296
Psp6I	CCWGG	3 cut(s)	89, 152, 406
PspGI	CCWGG	3 cut(s)	89, 152, 406
PspN4I	GGNNCC	1 cut(s)	221
PspPI	GGNCC	1 cut(s)	475
PsyI	GACNNNGTC	1 cut(s)	305
RsaI	GTAC	2 cut(s)	8, 221
RsaNI	GTAC	2 cut(s)	7, 220
RseI	CAYNNNNRTG	2 cut(s)	24, 362
SaqAI	TTAA	1 cut(s)	387
SatI	GCNGC	2 cut(s)	549, 561
Sau3AI	GATC	1 cut(s)	16
Sau96I	GGNCC	1 cut(s)	475
SchI	GAGTC	2 cut(s)	128, 338
ScrFI	CCNGG	3 cut(s)	91, 154, 408
SfaNI	GCATC	1 cut(s)	406
SfcI	CTRYAG	1 cut(s)	244
SmiMI	CAYNNNNRTG	2 cut(s)	24, 362
SmlI	CTYRAG	1 cut(s)	582
SmoI	CTYRAG	1 cut(s)	582
Sse9I	AATT	2 cut(s)	504, 607
SspI	AATATT	1 cut(s)	352
StyD4I	CCNGG	3 cut(s)	89, 152, 406
TaaI	ACNGT	1 cut(s)	181
TaiI	ACGT	2 cut(s)	299, 325
TaqI	TCGA	2 cut(s)	15, 566
TasI	AATT	2 cut(s)	504, 607
TfiI	GAWTC	1 cut(s)	59
Tru1I	TTAA	1 cut(s)	387
Tru9I	TTAA	1 cut(s)	387
TscAI	CASTG	3 cut(s)	186, 241, 577
TseFI	GTSAC	2 cut(s)	307, 617
TseI	GCWGC	2 cut(s)	548, 560
Tsp45I	GTSAC	2 cut(s)	307, 617
TspRI	CASTG	3 cut(s)	186, 241, 577
Tth111I	GACNNNGTC	1 cut(s)	305
XapI	RAATTY	1 cut(s)	607
Zsp2I	ATGCAT	1 cut(s)	496

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.