Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001791.1

Orthogroup ID

OG0002078

Physical Location & Seq

Genomic Coordinates Reverse (-)

108009 .. 109734

Gene Structure 1726 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001791.1_g000018.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 651 bp

atggcgtacaaggtcgatcacgaatatgattacctcttcaagattgtgttgattggagattcgggtgtcggaaagtccaacattctttccaggtttacgaggaatgagttttgtttggagtccaagtccaccattggagttgaatttgcaaccaggacattacaggtagaggggaagacagtgaaagcacaaatatgggacacagcaggtcaagagaggtaccgagccataaccagtgcttactacagaggtgctgttggtgctctattggtctatgacataaccaaaaggcaaacatttgacaatgtgacacggtggctacgcgaactcagagaccatgcagactcaaatattgtcattatgatggccggtaataaatctgacctcaatcacctgagatctgtcccaggagaagatgctcaactcttggctgagaaggaaggtctctcatttttagaaacttcagcattggaggcctttaatgttgagaatgcatttcagactattttgttggatatttaccacataataagcaagaaggcactagcagcacaggaggcagcttcgaccactggacttcctcaaggaactaccatcaatgttgcaaatctatcgggtgacatgaataagaaaacttgttgctctaactaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04144 ko04961 ko04962 ko04972 map04144 map04961 map04962 map04972

Pfam Domains

Protein Families

Ras

Protein Analysis

216

Amino Acids

23.98

Weight (kDa)

6.11

Isoelectric Point (pI)

36.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002078)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G07410 AT3G46830 AT3G46830 AT5G59150 AT5G59150
fragaria_vesca	FvH4_3g37150 FvH4_7g23580 FvH4_7g23580
malus_domestica	MD01G1141600.v1.1 MD03G1084700.v1.1 MD07G1205800.v1.1 MD11G1092300.v1.1
prunus_persica	Prupe.2G241900_v2.0.a1 Prupe.2G241900_v2.0.a1 Prupe.2G241900_v2.0.a1 Prupe.6G068000_v2.0.a1
pyrus_communis	pycom01g16190 pycom03g06690 pycom07g19270
rosa_chinensis	RchiOBHm_Chr1g0368751 RchiOBHm_Chr5g0042031 RchiOBHm_Chr5g0066871
rosa_laevigata	RLG00000027191 RLG00000035884
rosa_multiflora	Rmu_co8341881.1_g000001 Rmu_sc0000605.1_g000057 Rmu_sc0001791.1_g000018 Rmu_sc0005860.1_g000001 Rmu_sc0042332.1_g000001
rosa_roxburghii	Rroxscaffold_1G00014250 Rroxscaffold_4G00288300
rosa_rugosa	Rorug01G0344800 Rorug05G0379000 Rorug05G0379000 Rorug05G0379100
rosa_samantha	Rh1AG351800 Rh1BG315500 Rh1CG330200 Rh1DG347000 Rh5AG438800 Rh5BG455700 Rh5CG477800 Rh5DG470500
rosa_wichuraiana	Rw5G041030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	197
Acc65I	GGTACC	1 cut(s)	219
AccB1I	GGYRCC	1 cut(s)	219
AccII	CGCG	1 cut(s)	324
AcoI	YGGCCR	1 cut(s)	366
AcsI	RAATTY	1 cut(s)	143
AcuI	CTGAAG	1 cut(s)	447
AfaI	GTAC	2 cut(s)	8, 221
AgsI	TTSAA	2 cut(s)	40, 143
AjnI	CCWGG	3 cut(s)	89, 152, 406
AluBI	AGCT	1 cut(s)	563
AluI	AGCT	1 cut(s)	563
Alw21I	GWGCWC	1 cut(s)	265
Alw26I	GTCTC	2 cut(s)	327, 449
AoxI	GGCC	2 cut(s)	366, 474
ApeKI	GCWGC	2 cut(s)	548, 560
ApoI	RAATTY	1 cut(s)	143
Asp718I	GGTACC	1 cut(s)	219
AsuHPI	GGTGA	2 cut(s)	383, 629
BanI	GGYRCC	1 cut(s)	219
BbsI	GAAGAC	1 cut(s)	182
Bbv12I	GWGCWC	1 cut(s)	265
BbvI	GCAGC	2 cut(s)	560, 572
BccI	CCATC	2 cut(s)	358, 602
BcgI	CGANNNNNNTGC	2 cut(s)	594, 628
BciT130I	CCWGG	3 cut(s)	91, 154, 408
BcoDI	GTCTC	2 cut(s)	327, 449
BfaI	CTAG	1 cut(s)	545
BfmI	CTRYAG	1 cut(s)	244
BfuAI	ACCTGC	1 cut(s)	197
BglII	AGATCT	1 cut(s)	398
BisI	GCNGC	2 cut(s)	549, 561
BlsI	GCNGC	2 cut(s)	550, 562
Bme1390I	CCNGG	3 cut(s)	91, 154, 408
BmiI	GGNNCC	1 cut(s)	221
BmrFI	CCNGG	3 cut(s)	91, 154, 408
BmsI	GCATC	1 cut(s)	406
BpiI	GAAGAC	1 cut(s)	182
BpuEI	CTTGAG	1 cut(s)	567
BsaI	GGTCTC	2 cut(s)	327, 449
BsaJI	CCNNGG	1 cut(s)	406
BsaXI	ACNNNNNCTCC	2 cut(s)	110, 140
Bse118I	RCCGGY	1 cut(s)	368
Bse1I	ACTGG	2 cut(s)	234, 577
BseBI	CCWGG	3 cut(s)	91, 154, 408
BseDI	CCNNGG	1 cut(s)	406
BseMII	CTCAG	3 cut(s)	343, 386, 423
BseNI	ACTGG	2 cut(s)	234, 577
BseXI	GCAGC	2 cut(s)	560, 572
Bsh1236I	CGCG	1 cut(s)	324
BshFI	GGCC	2 cut(s)	368, 476
BshNI	GGYRCC	1 cut(s)	219
BsiHKAI	GWGCWC	1 cut(s)	265
BsiSI	CCGG	1 cut(s)	369
BslFI	GGGAC	2 cut(s)	212, 389
BsmAI	GTCTC	2 cut(s)	327, 449
BsmFI	GGGAC	2 cut(s)	212, 389
BsmI	GAATGC	1 cut(s)	496
BsnI	GGCC	2 cut(s)	368, 476
Bso31I	GGTCTC	2 cut(s)	327, 449
Bsp1286I	GDGCHC	1 cut(s)	265
Bsp143I	GATC	2 cut(s)	16, 398
BspANI	GGCC	2 cut(s)	368, 476
BspCNI	CTCAG	3 cut(s)	342, 387, 424
BspFNI	CGCG	1 cut(s)	324
BspLI	GGNNCC	1 cut(s)	221
BspMI	ACCTGC	1 cut(s)	197
BspT107I	GGYRCC	1 cut(s)	219
BspTNI	GGTCTC	2 cut(s)	327, 449
BsrFI	RCCGGY	1 cut(s)	368
BsrI	ACTGG	2 cut(s)	234, 577
BssAI	RCCGGY	1 cut(s)	368
BssECI	CCNNGG	1 cut(s)	406
BssMI	GATC	2 cut(s)	16, 398
Bst2UI	CCWGG	3 cut(s)	91, 154, 408
Bst4CI	ACNGT	2 cut(s)	181, 315
Bst6I	CTCTTC	1 cut(s)	41
BstDEI	CTNAG	3 cut(s)	329, 395, 432
BstFNI	CGCG	1 cut(s)	324
BstKTI	GATC	2 cut(s)	19, 401
BstMAI	GTCTC	2 cut(s)	327, 449
BstMBI	GATC	2 cut(s)	16, 398
BstMWI	GCNNNNNNNGC	4 cut(s)	260, 473, 548, 557
BstNI	CCWGG	3 cut(s)	91, 154, 408
BstSCI	CCNGG	3 cut(s)	89, 152, 406
BstSFI	CTRYAG	1 cut(s)	244
BstUI	CGCG	1 cut(s)	324
BstV1I	GCAGC	2 cut(s)	560, 572
BstV2I	GAAGAC	1 cut(s)	182
BstX2I	RGATCY	1 cut(s)	398
BstYI	RGATCY	1 cut(s)	398
BsuRI	GGCC	2 cut(s)	368, 476
BtsIMutI	CAGTG	3 cut(s)	186, 241, 570
BveI	ACCTGC	1 cut(s)	197
Cfr10I	RCCGGY	1 cut(s)	368
Csp6I	GTAC	2 cut(s)	7, 220
CviAII	CATG	2 cut(s)	338, 622
CviJI	RGCY	6 cut(s)	227, 319, 368, 431, 476, 563
CviKI_1	RGCY	6 cut(s)	227, 319, 368, 431, 476, 563
CviQI	GTAC	2 cut(s)	7, 220
DdeI	CTNAG	3 cut(s)	329, 395, 432
DpnI	GATC	2 cut(s)	18, 400
DpnII	GATC	2 cut(s)	16, 398
EaeI	YGGCCR	1 cut(s)	366
Eam1104I	CTCTTC	1 cut(s)	41
EarI	CTCTTC	1 cut(s)	41
Eco147I	AGGCCT	1 cut(s)	476
Eco31I	GGTCTC	2 cut(s)	327, 449
Eco57I	CTGAAG	1 cut(s)	447
EcoRII	CCWGG	3 cut(s)	89, 152, 406
EcoT22I	ATGCAT	1 cut(s)	496
FaeI	CATG	2 cut(s)	341, 625
FaiI	YATR	9 cut(s)	27, 196, 230, 276, 281, 339, 362, 527, 623
FaqI	GGGAC	2 cut(s)	212, 389
FatI	CATG	2 cut(s)	337, 621
Fnu4HI	GCNGC	2 cut(s)	549, 561
Fsp4HI	GCNGC	2 cut(s)	549, 561
FspBI	CTAG	1 cut(s)	545
GluI	GCNGC	2 cut(s)	549, 561
HaeIII	GGCC	2 cut(s)	368, 476
HapII	CCGG	1 cut(s)	369
Hin1II	CATG	2 cut(s)	341, 625
HinfI	GANTC	3 cut(s)	59, 119, 344
HpaII	CCGG	1 cut(s)	369
HphI	GGTGA	2 cut(s)	383, 629
Hpy166II	GTNNAC	2 cut(s)	96, 129
Hpy188I	TCNGA	4 cut(s)	71, 332, 382, 501
Hpy188III	TCNNGA	3 cut(s)	20, 40, 212
Hpy8I	GTNNAC	2 cut(s)	96, 129
HpyAV	CCTTC	3 cut(s)	430, 434, 532
HpyCH4III	ACNGT	2 cut(s)	181, 315
HpyCH4V	TGCA	4 cut(s)	149, 341, 494, 605
HpyF10VI	GCNNNNNNNGC	4 cut(s)	260, 473, 548, 557
HpyF3I	CTNAG	3 cut(s)	329, 395, 432
Hsp92II	CATG	2 cut(s)	341, 625
KpnI	GGTACC	1 cut(s)	223
Kzo9I	GATC	2 cut(s)	16, 398
Lsp1109I	GCAGC	2 cut(s)	560, 572
LweI	GCATC	1 cut(s)	406
MaeI	CTAG	1 cut(s)	545
MaeIII	GTNAC	2 cut(s)	307, 617
MalI	GATC	2 cut(s)	18, 400
MboI	GATC	2 cut(s)	16, 398
MboII	GAAGA	3 cut(s)	28, 187, 425
MflI	RGATCY	1 cut(s)	398
MhlI	GDGCHC	1 cut(s)	265
MluCI	AATT	1 cut(s)	143
MlyI	GAGTC	2 cut(s)	128, 338
MmeI	TCCRAC	3 cut(s)	49, 102, 492
MnlI	CCTC	9 cut(s)	44, 93, 163, 210, 242, 395, 466, 550, 591
Mph1103I	ATGCAT	1 cut(s)	496
MseI	TTAA	1 cut(s)	480
MslI	CAYNNNNRTG	3 cut(s)	24, 193, 362
MspI	CCGG	1 cut(s)	369
MspR9I	CCNGG	3 cut(s)	91, 154, 408
Mva1269I	GAATGC	1 cut(s)	496
MvaI	CCWGG	3 cut(s)	91, 154, 408
MvnI	CGCG	1 cut(s)	324
MwoI	GCNNNNNNNGC	4 cut(s)	260, 473, 548, 557
NdeII	GATC	2 cut(s)	16, 398
NlaIII	CATG	2 cut(s)	341, 625
NlaIV	GGNNCC	1 cut(s)	221
NmuCI	GTSAC	2 cut(s)	307, 617
NsiI	ATGCAT	1 cut(s)	496
PceI	AGGCCT	1 cut(s)	476
PctI	GAATGC	1 cut(s)	496
PfeI	GAWTC	1 cut(s)	59
PkrI	GCNGC	2 cut(s)	550, 562
PleI	GAGTC	2 cut(s)	127, 338
PpsI	GAGTC	2 cut(s)	127, 338
Psp6I	CCWGG	3 cut(s)	89, 152, 406
PspGI	CCWGG	3 cut(s)	89, 152, 406
PspN4I	GGNNCC	1 cut(s)	221
PsuI	RGATCY	1 cut(s)	398
RsaI	GTAC	2 cut(s)	8, 221
RsaNI	GTAC	2 cut(s)	7, 220
RseI	CAYNNNNRTG	3 cut(s)	24, 193, 362
SaqAI	TTAA	1 cut(s)	480
SatI	GCNGC	2 cut(s)	549, 561
Sau3AI	GATC	2 cut(s)	16, 398
SchI	GAGTC	2 cut(s)	128, 338
ScrFI	CCNGG	3 cut(s)	91, 154, 408
SduI	GDGCHC	1 cut(s)	265
SfaNI	GCATC	1 cut(s)	406
SfcI	CTRYAG	1 cut(s)	244
SmiMI	CAYNNNNRTG	3 cut(s)	24, 193, 362
SmlI	CTYRAG	1 cut(s)	582
SmoI	CTYRAG	1 cut(s)	582
Sse9I	AATT	1 cut(s)	143
SseBI	AGGCCT	1 cut(s)	476
SspI	AATATT	1 cut(s)	352
SspMI	CTAG	1 cut(s)	545
StuI	AGGCCT	1 cut(s)	476
StyD4I	CCNGG	3 cut(s)	89, 152, 406
TaaI	ACNGT	2 cut(s)	181, 315
TaqI	TCGA	2 cut(s)	15, 566
TasI	AATT	1 cut(s)	143
TfiI	GAWTC	1 cut(s)	59
Tru1I	TTAA	1 cut(s)	480
Tru9I	TTAA	1 cut(s)	480
TscAI	CASTG	3 cut(s)	186, 241, 577
TseFI	GTSAC	2 cut(s)	307, 617
TseI	GCWGC	2 cut(s)	548, 560
Tsp45I	GTSAC	2 cut(s)	307, 617
TspDTI	ATGAA	1 cut(s)	638
TspRI	CASTG	3 cut(s)	186, 241, 577
XapI	RAATTY	1 cut(s)	143
XspI	CTAG	1 cut(s)	545
Zsp2I	ATGCAT	1 cut(s)	496

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.