Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0002078

Physical Location & Seq

Genomic Coordinates Reverse (-)

73104425 .. 73106791

Gene Structure 2367 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000035884

Sequence Viewer

CDS Protein Promoter (2k)

Length: 945 bp

ATGAAATTAACGGCGTGGCAGACACTAATATCAAAAAACATCCCTCTGGCACCAACTGCCAGAGTGCCAGGCTGCACATGTCAGACGACGGCATCTATCTCACTGTCTCTCCCTTTGACCCCGAGTTGTCCTAAAACGACGCCGTCTCCACCTCACAAACCCCCTCCCCCACACACCAAGGAATCTATTTATTTGCCGTTTCCCACTTTTTCAAACCCCCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCCTCATCGTGAGAGAGATCGGGGGAGATCGGAGAGGAGAGGCTGTATGGCGAGCAGAGTGGACCACGAGTACGACTACCTGTTCAAGATCGTTCTGATCGGCGACTCTGGAGTTGGCAAATCCAACATTCTCTCCAGGTTCACCAGAAATGAGTTCTGCTTGGAGTCCAAGTCCACCATCGGCGTCGAGTTCGCCACCAGAACTCTTCAGGTTGAAGGAAAAACTGTCAAGGCACAGATCTGGGATACAGCAGGGCAGGAGCGATATCGTGCTATCACCAGTGCATACTATAGAGGGGCAGTGGGTGCTCTCCTTGTCTATGACATAACTAAGCGCCCAACATTTGATAATGTTCAAAGGTGGCTCCGTGAATTGAGGGACCATGCGGATTCTAATATTGTCATCATGATGGCTGGAAATAAGTCCGACTTGAACCATCTTAGAGCTGTTTCAGAGGATGATGGTCAGGCCTTGGCTGAGAGGGAAGGTCTCTCATTTCTTGAGACATCAGCACTCGAAGCAACCAATATTGAGAAGGCATTTCAAACTATTTTAACAGAGATCTACCATATCATTAGCAAAAAGGCACTGGCAGCTCAGGAAGCAGTCGCGAGCACTACCCTTCCTGGTCAAGGAACTACTATCAATGTTGGTGATGCTTCTGGGAATACGAAAAGAGGTTGCTGCTCTACATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005829 GO:0005886 GO:0005911 GO:0008150 GO:0009504 GO:0009506 GO:0009987 GO:0012505 GO:0016020 GO:0030054 GO:0031410 GO:0031982 GO:0042546 GO:0043226 GO:0043227 GO:0043229 GO:0044085 GO:0044424 GO:0044444 GO:0044464 GO:0055044 GO:0071554 GO:0071840 GO:0071944 GO:0097708

KEGG Pathways

Metabolic & Signaling

ko04144 ko04152 ko04961 ko04962 ko04972 map04144 map04152 map04961 map04962 map04972

Pfam Domains

Protein Families

Ras

Protein Analysis

315

Amino Acids

34.59

Weight (kDa)

8.92

Isoelectric Point (pI)

48.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Arf	PF00025	111 - 260	1.1e-12	ADP-ribosylation factor family
Ras	PF00071	112 - 272	3.8e-62	Ras family
Roc	PF08477	112 - 226	3.9e-34	Ras of Complex, Roc, domain of DAPkinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002078)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G07410 AT3G46830 AT3G46830 AT5G59150 AT5G59150
fragaria_vesca	FvH4_3g37150 FvH4_7g23580 FvH4_7g23580
malus_domestica	MD01G1141600.v1.1 MD03G1084700.v1.1 MD07G1205800.v1.1 MD11G1092300.v1.1
prunus_persica	Prupe.2G241900_v2.0.a1 Prupe.2G241900_v2.0.a1 Prupe.2G241900_v2.0.a1 Prupe.6G068000_v2.0.a1
pyrus_communis	pycom01g16190 pycom03g06690 pycom07g19270
rosa_chinensis	RchiOBHm_Chr1g0368751 RchiOBHm_Chr5g0042031 RchiOBHm_Chr5g0066871
rosa_laevigata	RLG00000027191 RLG00000035884
rosa_multiflora	Rmu_co8341881.1_g000001 Rmu_sc0000605.1_g000057 Rmu_sc0001791.1_g000018 Rmu_sc0005860.1_g000001 Rmu_sc0042332.1_g000001
rosa_roxburghii	Rroxscaffold_1G00014250 Rroxscaffold_4G00288300
rosa_rugosa	Rorug01G0344800 Rorug05G0379000 Rorug05G0379000 Rorug05G0379100
rosa_samantha	Rh1AG351800 Rh1BG315500 Rh1CG330200 Rh1DG347000 Rh5AG438800 Rh5BG455700 Rh5CG477800 Rh5DG470500
rosa_wichuraiana	Rw5G041030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	49
AccII	CGCG	1 cut(s)	860
AciI	CCGC	1 cut(s)	635
AcuI	CTGAAG	1 cut(s)	440
AcyI	GRCGYC	2 cut(s)	140, 432
AfaI	GTAC	1 cut(s)	320
AfiI	CCNNNNNNNGG	1 cut(s)	881
AflIII	ACRYGT	1 cut(s)	77
AgsI	TTSAA	6 cut(s)	213, 334, 464, 605, 682, 794
AjnI	CCWGG	3 cut(s)	67, 383, 874
AluBI	AGCT	2 cut(s)	695, 845
AluI	AGCT	2 cut(s)	695, 845
Alw21I	GWGCWC	2 cut(s)	559, 866
Alw26I	GTCTC	4 cut(s)	111, 150, 743, 746
Ama87I	CYCGRG	1 cut(s)	121
AoxI	GGCC	1 cut(s)	717
ApeKI	GCWGC	3 cut(s)	72, 842, 933
AspLEI	GCGC	1 cut(s)	585
AspS9I	GGNCC	2 cut(s)	310, 628
AsuHPI	GGTGA	3 cut(s)	382, 517, 914
AvaI	CYCGRG	1 cut(s)	121
AvaII	GGWCC	2 cut(s)	310, 628
BanI	GGYRCC	1 cut(s)	49
BauI	CACGAG	1 cut(s)	314
Bbv12I	GWGCWC	2 cut(s)	559, 866
BbvI	GCAGC	3 cut(s)	59, 854, 920
BccI	CCATC	4 cut(s)	434, 652, 693, 704
BceAI	ACGGC	4 cut(s)	27, 105, 127, 181
BciT130I	CCWGG	3 cut(s)	69, 385, 876
BciVI	GTATCC	1 cut(s)	487
BcoDI	GTCTC	4 cut(s)	111, 150, 743, 746
BfmI	CTRYAG	1 cut(s)	538
BfoI	RGCGCY	1 cut(s)	586
BfuI	GTATCC	1 cut(s)	487
BglII	AGATCT	2 cut(s)	486, 810
BisI	GCNGC	3 cut(s)	73, 843, 934
BlsI	GCNGC	3 cut(s)	74, 844, 935
Bme1390I	CCNGG	3 cut(s)	69, 385, 876
Bme18I	GGWCC	2 cut(s)	310, 628
BmeT110I	CYCGRG	1 cut(s)	121
BmgT120I	GGNCC	2 cut(s)	310, 628
BmiI	GGNNCC	3 cut(s)	51, 614, 629
BmrFI	CCNGG	3 cut(s)	69, 385, 876
BmsI	GCATC	2 cut(s)	101, 895
BpmI	CTGGAG	2 cut(s)	367, 378
Bpu10I	CCTNAGC	1 cut(s)	846
BpuEI	CTTGAG	1 cut(s)	770
BsaHI	GRCGYC	2 cut(s)	140, 432
BsaI	GGTCTC	1 cut(s)	743
BsaJI	CCNNGG	2 cut(s)	177, 720
Bsc4I	CCNNNNNNNGG	1 cut(s)	881
Bse1I	ACTGG	2 cut(s)	528, 843
BseBI	CCWGG	3 cut(s)	69, 385, 876
BseDI	CCNNGG	2 cut(s)	177, 720
BseGI	GGATG	2 cut(s)	39, 712
BseLI	CCNNNNNNNGG	1 cut(s)	881
BseMII	CTCAG	2 cut(s)	717, 860
BseNI	ACTGG	2 cut(s)	528, 843
BseRI	GAGGAG	1 cut(s)	298
BseXI	GCAGC	3 cut(s)	59, 854, 920
BsgI	GTGCAG	1 cut(s)	58
Bsh1236I	CGCG	1 cut(s)	860
BshFI	GGCC	1 cut(s)	719
BshNI	GGYRCC	1 cut(s)	49
BsiHKAI	GWGCWC	2 cut(s)	559, 866
BsiHKCI	CYCGRG	1 cut(s)	121
BslFI	GGGAC	1 cut(s)	641
BslI	CCNNNNNNNGG	1 cut(s)	881
BsmAI	GTCTC	4 cut(s)	111, 150, 743, 746
BsmBI	CGTCTC	1 cut(s)	150
BsmFI	GGGAC	1 cut(s)	641
BsnI	GGCC	1 cut(s)	719
Bso31I	GGTCTC	1 cut(s)	743
BsoBI	CYCGRG	1 cut(s)	121
Bsp1286I	GDGCHC	2 cut(s)	559, 866
Bsp143I	GATC	6 cut(s)	265, 275, 336, 345, 486, 810
Bsp68I	TCGCGA	1 cut(s)	860
BspACI	CCGC	1 cut(s)	635
BspANI	GGCC	1 cut(s)	719
BspCNI	CTCAG	2 cut(s)	718, 859
BspFNI	CGCG	1 cut(s)	860
BspHI	TCATGA	1 cut(s)	654
BspLI	GGNNCC	3 cut(s)	51, 614, 629
BspT107I	GGYRCC	1 cut(s)	49
BspTNI	GGTCTC	1 cut(s)	743
BsrI	ACTGG	2 cut(s)	528, 843
BssECI	CCNNGG	2 cut(s)	177, 720
BssMI	GATC	6 cut(s)	265, 275, 336, 345, 486, 810
BssNI	GRCGYC	2 cut(s)	140, 432
BssSI	CACGAG	1 cut(s)	314
BssT1I	CCWWGG	2 cut(s)	177, 720
Bst2BI	CACGAG	1 cut(s)	314
Bst2UI	CCWGG	3 cut(s)	69, 385, 876
Bst4CI	ACNGT	2 cut(s)	105, 475
Bst6I	CTCTTC	1 cut(s)	459
BstACI	GRCGYC	2 cut(s)	140, 432
BstAPI	GCANNNNNTGC	2 cut(s)	56, 554
BstC8I	GCNNGC	2 cut(s)	301, 862
BstDEI	CTNAG	4 cut(s)	579, 689, 726, 846
BstENI	CCTNNNNNAGG	1 cut(s)	879
BstF5I	GGATG	2 cut(s)	39, 712
BstFNI	CGCG	1 cut(s)	860
BstH2I	RGCGCY	1 cut(s)	586
BstHHI	GCGC	1 cut(s)	585
BstKTI	GATC	6 cut(s)	268, 278, 339, 348, 489, 813
BstMAI	GTCTC	4 cut(s)	111, 150, 743, 746
BstMBI	GATC	6 cut(s)	265, 275, 336, 345, 486, 810
BstMWI	GCNNNNNNNGC	5 cut(s)	56, 554, 767, 842, 851
BstNI	CCWGG	3 cut(s)	69, 385, 876
BstNSI	RCATGY	1 cut(s)	81
BstSCI	CCNGG	3 cut(s)	67, 383, 874
BstSFI	CTRYAG	1 cut(s)	538
BstUI	CGCG	1 cut(s)	860
BstV1I	GCAGC	3 cut(s)	59, 854, 920
BstX2I	RGATCY	2 cut(s)	486, 810
BstYI	RGATCY	2 cut(s)	486, 810
BsuI	GTATCC	1 cut(s)	487
BsuRI	GGCC	1 cut(s)	719
BtsCI	GGATG	2 cut(s)	39, 712
BtsI	GCAGTG	1 cut(s)	555
BtsIMutI	CAGTG	4 cut(s)	101, 535, 555, 836
BtuMI	TCGCGA	1 cut(s)	860
Cac8I	GCNNGC	2 cut(s)	301, 862
CciI	TCATGA	1 cut(s)	654
CfoI	GCGC	1 cut(s)	585
Cfr13I	GGNCC	2 cut(s)	310, 628
CseI	GACGC	2 cut(s)	148, 421
Csp6I	GTAC	1 cut(s)	319
CviAII	CATG	3 cut(s)	78, 632, 655
CviJI	RGCY	8 cut(s)	72, 291, 613, 662, 695, 719, 725, 845
CviKI_1	RGCY	8 cut(s)	72, 291, 613, 662, 695, 719, 725, 845
CviQI	GTAC	1 cut(s)	319
DdeI	CTNAG	4 cut(s)	579, 689, 726, 846
DpnI	GATC	6 cut(s)	267, 277, 338, 347, 488, 812
DpnII	GATC	6 cut(s)	265, 275, 336, 345, 486, 810
Eam1104I	CTCTTC	1 cut(s)	459
EarI	CTCTTC	1 cut(s)	459
Eco130I	CCWWGG	2 cut(s)	177, 720
Eco147I	AGGCCT	1 cut(s)	719
Eco31I	GGTCTC	1 cut(s)	743
Eco32I	GATATC	1 cut(s)	515
Eco47I	GGWCC	2 cut(s)	310, 628
Eco57I	CTGAAG	1 cut(s)	440
Eco88I	CYCGRG	1 cut(s)	121
EcoNI	CCTNNNNNAGG	1 cut(s)	879
EcoRII	CCWGG	3 cut(s)	67, 383, 874
EcoRV	GATATC	1 cut(s)	515
EcoT14I	CCWWGG	2 cut(s)	177, 720
ErhI	CCWWGG	2 cut(s)	177, 720
Esp3I	CGTCTC	1 cut(s)	150
FaeI	CATG	3 cut(s)	81, 635, 658
FalI	AAGNNNNNCTT	2 cut(s)	662, 694
FaqI	GGGAC	1 cut(s)	641
FatI	CATG	3 cut(s)	77, 631, 654
Fnu4HI	GCNGC	3 cut(s)	73, 843, 934
FokI	GGATG	2 cut(s)	26, 719
Fsp4HI	GCNGC	3 cut(s)	73, 843, 934
GlaI	GCGC	1 cut(s)	584
GluI	GCNGC	3 cut(s)	73, 843, 934
GsuI	CTGGAG	2 cut(s)	367, 378
HaeII	RGCGCY	1 cut(s)	586
HaeIII	GGCC	1 cut(s)	719
HgaI	GACGC	2 cut(s)	148, 421
HhaI	GCGC	1 cut(s)	585
Hin1I	GRCGYC	2 cut(s)	140, 432
Hin1II	CATG	3 cut(s)	81, 635, 658
Hin6I	GCGC	1 cut(s)	583
HinP1I	GCGC	1 cut(s)	583
HinfI	GANTC	4 cut(s)	182, 353, 413, 638
HphI	GGTGA	3 cut(s)	382, 517, 914
Hpy166II	GTNNAC	3 cut(s)	310, 390, 423
Hpy188I	TCNGA	5 cut(s)	84, 280, 345, 676, 703
Hpy188III	TCNNGA	7 cut(s)	257, 334, 357, 655, 749, 848, 859
Hpy8I	GTNNAC	3 cut(s)	310, 390, 423
Hpy99I	CGWCG	3 cut(s)	91, 142, 437
HpyAV	CCTTC	5 cut(s)	230, 458, 728, 778, 881
HpyCH4III	ACNGT	2 cut(s)	105, 475
HpyCH4V	TGCA	2 cut(s)	75, 533
HpyF10VI	GCNNNNNNNGC	5 cut(s)	56, 554, 767, 842, 851
HpyF3I	CTNAG	4 cut(s)	579, 689, 726, 846
Hsp92I	GRCGYC	2 cut(s)	140, 432
Hsp92II	CATG	3 cut(s)	81, 635, 658
HspAI	GCGC	1 cut(s)	583
Kzo9I	GATC	6 cut(s)	265, 275, 336, 345, 486, 810
LmnI	GCTCC	2 cut(s)	508, 618
Lsp1109I	GCAGC	3 cut(s)	59, 854, 920
LweI	GCATC	2 cut(s)	101, 895
MalI	GATC	6 cut(s)	267, 277, 338, 347, 488, 812
MboI	GATC	6 cut(s)	265, 275, 336, 345, 486, 810
MflI	RGATCY	2 cut(s)	486, 810
MhlI	GDGCHC	2 cut(s)	559, 866
MluCI	AATT	2 cut(s)	5, 620
MlyI	GAGTC	2 cut(s)	347, 422
MmeI	TCCRAC	2 cut(s)	396, 699
MseI	TTAA	2 cut(s)	8, 803
MslI	CAYNNNNRTG	1 cut(s)	656
MspR9I	CCNGG	3 cut(s)	69, 385, 876
MvaI	CCWGG	3 cut(s)	69, 385, 876
MvnI	CGCG	1 cut(s)	860
MwoI	GCNNNNNNNGC	5 cut(s)	56, 554, 767, 842, 851
NdeII	GATC	6 cut(s)	265, 275, 336, 345, 486, 810
NlaIII	CATG	3 cut(s)	81, 635, 658
NlaIV	GGNNCC	3 cut(s)	51, 614, 629
NruI	TCGCGA	1 cut(s)	860
NspI	RCATGY	1 cut(s)	81
PagI	TCATGA	1 cut(s)	654
PceI	AGGCCT	1 cut(s)	719
PciI	ACATGT	1 cut(s)	77
PfeI	GAWTC	2 cut(s)	182, 638
PflFI	GACNNNGTC	1 cut(s)	142
PkrI	GCNGC	3 cut(s)	74, 844, 935
PleI	GAGTC	2 cut(s)	347, 421
PpsI	GAGTC	2 cut(s)	347, 421
PscI	ACATGT	1 cut(s)	77
Psp6I	CCWGG	3 cut(s)	67, 383, 874
PspGI	CCWGG	3 cut(s)	67, 383, 874
PspN4I	GGNNCC	3 cut(s)	51, 614, 629
PspPI	GGNCC	2 cut(s)	310, 628
PsuI	RGATCY	2 cut(s)	486, 810
PsyI	GACNNNGTC	1 cut(s)	142
RruI	TCGCGA	1 cut(s)	860
RsaI	GTAC	1 cut(s)	320
RsaNI	GTAC	1 cut(s)	319
RseI	CAYNNNNRTG	1 cut(s)	656
SaqAI	TTAA	2 cut(s)	8, 803
SatI	GCNGC	3 cut(s)	73, 843, 934
Sau3AI	GATC	6 cut(s)	265, 275, 336, 345, 486, 810
Sau96I	GGNCC	2 cut(s)	310, 628
SchI	GAGTC	2 cut(s)	347, 422
ScrFI	CCNGG	3 cut(s)	69, 385, 876
SduI	GDGCHC	2 cut(s)	559, 866
SetI	ASST	9 cut(s)	154, 330, 389, 462, 611, 697, 739, 847, 931
SfaNI	GCATC	2 cut(s)	101, 895
SfcI	CTRYAG	1 cut(s)	538
SinI	GGWCC	2 cut(s)	310, 628
SmiMI	CAYNNNNRTG	1 cut(s)	656
SmlI	CTYRAG	1 cut(s)	749
SmoI	CTYRAG	1 cut(s)	749
Sse9I	AATT	2 cut(s)	5, 620
SseBI	AGGCCT	1 cut(s)	719
SsiI	CCGC	1 cut(s)	635
SspI	AATATT	2 cut(s)	646, 778
StuI	AGGCCT	1 cut(s)	719
StyD4I	CCNGG	3 cut(s)	67, 383, 874
StyI	CCWWGG	2 cut(s)	177, 720
TaaI	ACNGT	2 cut(s)	105, 475
TaqI	TCGA	2 cut(s)	435, 765
TasI	AATT	2 cut(s)	5, 620
TfiI	GAWTC	2 cut(s)	182, 638
Tru1I	TTAA	2 cut(s)	8, 803
Tru9I	TTAA	2 cut(s)	8, 803
TscAI	CASTG	4 cut(s)	108, 535, 555, 843
TseI	GCWGC	3 cut(s)	72, 842, 933
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	1 cut(s)	605
TspRI	CASTG	4 cut(s)	108, 535, 555, 843
Tth111I	GACNNNGTC	1 cut(s)	142
VpaK11BI	GGWCC	2 cut(s)	310, 628
XagI	CCTNNNNNAGG	1 cut(s)	879
XceI	RCATGY	1 cut(s)	81

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.