Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0042332.1

Orthogroup ID

OG0002078

Physical Location & Seq

Genomic Coordinates Reverse (-)

647 .. 2020

Gene Structure 1374 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0042332.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 711 bp

atgatatgtctcaatgtctgtatttggagtttagatatatacaagcctgattccggtaggttggtcaatgattacacccatgaaaaattagggcatcaaatgccgaagtattctgactttgagtatttacattatatttttgctctcttcctacatgatgttgctgcatatttgagatccttgtcgtatggactttggaaactggatggaatgtgttcgtgttatgttgaaggaaaaactgtcaaggcacagatctgggatacagcagggcaggagcgatatcgtgctatcaccagtgcatactatagaggggcagtgggtgctctccttgtctatgacataactaagcgcccaacatttgataatgtccaaaggtggctccgtgaattgagggaccatgcggattctaatattgtcatcatgatggctggaaataagtccgacttgaaccatcttagagctgtttcagaggatgatggtcaggccttggctgagagggaaggtctctcatttcttgagacatcagcactcgaagcaaccaatattgagaaggcatttcaaactattttaacagagatctaccatatcattagcaaaaaggcactggcagctcaggaagcagtcgcgagcactacccttcctggtcaaggaactactatcaatgttggtgatgcttctgggaatacgaaaagaggttgctgctctacataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005829 GO:0005886 GO:0005911 GO:0008150 GO:0009504 GO:0009506 GO:0009987 GO:0012505 GO:0016020 GO:0030054 GO:0031410 GO:0031982 GO:0042546 GO:0043226 GO:0043227 GO:0043229 GO:0044085 GO:0044424 GO:0044444 GO:0044464 GO:0055044 GO:0071554 GO:0071840 GO:0071944 GO:0097708

KEGG Pathways

Metabolic & Signaling

ko04144 ko04152 ko04961 ko04962 ko04972 map04144 map04152 map04961 map04962 map04972

Pfam Domains

Protein Families

Ras

Protein Analysis

236

Amino Acids

26.42

Weight (kDa)

5.97

Isoelectric Point (pI)

38.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002078)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G07410 AT3G46830 AT3G46830 AT5G59150 AT5G59150
fragaria_vesca	FvH4_3g37150 FvH4_7g23580 FvH4_7g23580
malus_domestica	MD01G1141600.v1.1 MD03G1084700.v1.1 MD07G1205800.v1.1 MD11G1092300.v1.1
prunus_persica	Prupe.2G241900_v2.0.a1 Prupe.2G241900_v2.0.a1 Prupe.2G241900_v2.0.a1 Prupe.6G068000_v2.0.a1
pyrus_communis	pycom01g16190 pycom03g06690 pycom07g19270
rosa_chinensis	RchiOBHm_Chr1g0368751 RchiOBHm_Chr5g0042031 RchiOBHm_Chr5g0066871
rosa_laevigata	RLG00000027191 RLG00000035884
rosa_multiflora	Rmu_co8341881.1_g000001 Rmu_sc0000605.1_g000057 Rmu_sc0001791.1_g000018 Rmu_sc0005860.1_g000001 Rmu_sc0042332.1_g000001
rosa_roxburghii	Rroxscaffold_1G00014250 Rroxscaffold_4G00288300
rosa_rugosa	Rorug01G0344800 Rorug05G0379000 Rorug05G0379000 Rorug05G0379100
rosa_samantha	Rh1AG351800 Rh1BG315500 Rh1CG330200 Rh1DG347000 Rh5AG438800 Rh5BG455700 Rh5CG477800 Rh5DG470500
rosa_wichuraiana	Rw5G041030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	626
AciI	CCGC	1 cut(s)	401
AclWI	GGATC	1 cut(s)	171
AfiI	CCNNNNNNNGG	2 cut(s)	53, 647
AgsI	TTSAA	3 cut(s)	230, 448, 560
AjnI	CCWGG	1 cut(s)	640
AluBI	AGCT	2 cut(s)	461, 611
AluI	AGCT	2 cut(s)	461, 611
Alw21I	GWGCWC	2 cut(s)	325, 632
Alw26I	GTCTC	3 cut(s)	14, 509, 512
AlwI	GGATC	1 cut(s)	171
AoxI	GGCC	1 cut(s)	483
ApeKI	GCWGC	3 cut(s)	164, 608, 699
Asp700I	GAANNNNTTC	1 cut(s)	214
AspLEI	GCGC	1 cut(s)	351
AspS9I	GGNCC	1 cut(s)	394
AsuHPI	GGTGA	2 cut(s)	283, 680
AvaII	GGWCC	1 cut(s)	394
Bbv12I	GWGCWC	2 cut(s)	325, 632
BbvI	GCAGC	3 cut(s)	151, 620, 686
BccI	CCATC	4 cut(s)	200, 418, 459, 470
BciT130I	CCWGG	1 cut(s)	642
BciVI	GTATCC	1 cut(s)	253
BcoDI	GTCTC	3 cut(s)	14, 509, 512
BfmI	CTRYAG	1 cut(s)	304
BfoI	RGCGCY	1 cut(s)	352
BfuI	GTATCC	1 cut(s)	253
BglII	AGATCT	2 cut(s)	252, 576
BisI	GCNGC	3 cut(s)	165, 609, 700
BlsI	GCNGC	3 cut(s)	166, 610, 701
Bme1390I	CCNGG	1 cut(s)	642
Bme18I	GGWCC	1 cut(s)	394
BmgT120I	GGNCC	1 cut(s)	394
BmiI	GGNNCC	2 cut(s)	380, 395
BmrFI	CCNGG	1 cut(s)	642
BmsI	GCATC	2 cut(s)	103, 661
Bpu10I	CCTNAGC	1 cut(s)	612
BpuEI	CTTGAG	1 cut(s)	536
BsaI	GGTCTC	1 cut(s)	509
BsaJI	CCNNGG	1 cut(s)	486
BsaWI	WCCGGW	1 cut(s)	53
Bsc4I	CCNNNNNNNGG	2 cut(s)	53, 647
Bse1I	ACTGG	3 cut(s)	207, 294, 609
BseBI	CCWGG	1 cut(s)	642
BseDI	CCNNGG	1 cut(s)	486
BseGI	GGATG	2 cut(s)	211, 478
BseLI	CCNNNNNNNGG	2 cut(s)	53, 647
BseMII	CTCAG	2 cut(s)	483, 626
BseNI	ACTGG	3 cut(s)	207, 294, 609
BseXI	GCAGC	3 cut(s)	151, 620, 686
Bsh1236I	CGCG	1 cut(s)	626
BshFI	GGCC	1 cut(s)	485
BsiHKAI	GWGCWC	2 cut(s)	325, 632
BsiSI	CCGG	1 cut(s)	54
BslFI	GGGAC	1 cut(s)	407
BslI	CCNNNNNNNGG	2 cut(s)	53, 647
BsmAI	GTCTC	3 cut(s)	14, 509, 512
BsmFI	GGGAC	1 cut(s)	407
BsnI	GGCC	1 cut(s)	485
Bso31I	GGTCTC	1 cut(s)	509
Bsp1286I	GDGCHC	2 cut(s)	325, 632
Bsp143I	GATC	3 cut(s)	176, 252, 576
Bsp68I	TCGCGA	1 cut(s)	626
BspACI	CCGC	1 cut(s)	401
BspANI	GGCC	1 cut(s)	485
BspCNI	CTCAG	2 cut(s)	484, 625
BspFNI	CGCG	1 cut(s)	626
BspHI	TCATGA	1 cut(s)	420
BspLI	GGNNCC	2 cut(s)	380, 395
BspPI	GGATC	1 cut(s)	171
BspTNI	GGTCTC	1 cut(s)	509
BsrI	ACTGG	3 cut(s)	207, 294, 609
BssECI	CCNNGG	1 cut(s)	486
BssMI	GATC	3 cut(s)	176, 252, 576
BssT1I	CCWWGG	1 cut(s)	486
Bst2UI	CCWGG	1 cut(s)	642
Bst4CI	ACNGT	1 cut(s)	241
Bst6I	CTCTTC	1 cut(s)	152
BstAPI	GCANNNNNTGC	2 cut(s)	100, 320
BstC8I	GCNNGC	1 cut(s)	628
BstDEI	CTNAG	4 cut(s)	345, 455, 492, 612
BstENI	CCTNNNNNAGG	1 cut(s)	645
BstF5I	GGATG	2 cut(s)	211, 478
BstFNI	CGCG	1 cut(s)	626
BstH2I	RGCGCY	1 cut(s)	352
BstHHI	GCGC	1 cut(s)	351
BstKTI	GATC	3 cut(s)	179, 255, 579
BstMAI	GTCTC	3 cut(s)	14, 509, 512
BstMBI	GATC	3 cut(s)	176, 252, 576
BstMWI	GCNNNNNNNGC	5 cut(s)	100, 320, 533, 608, 617
BstNI	CCWGG	1 cut(s)	642
BstSCI	CCNGG	1 cut(s)	640
BstSFI	CTRYAG	1 cut(s)	304
BstUI	CGCG	1 cut(s)	626
BstV1I	GCAGC	3 cut(s)	151, 620, 686
BstX2I	RGATCY	3 cut(s)	176, 252, 576
BstYI	RGATCY	3 cut(s)	176, 252, 576
BsuI	GTATCC	1 cut(s)	253
BsuRI	GGCC	1 cut(s)	485
BtsCI	GGATG	2 cut(s)	211, 478
BtsI	GCAGTG	1 cut(s)	321
BtsIMutI	CAGTG	3 cut(s)	301, 321, 602
BtuMI	TCGCGA	1 cut(s)	626
Cac8I	GCNNGC	1 cut(s)	628
CciI	TCATGA	1 cut(s)	420
CfoI	GCGC	1 cut(s)	351
Cfr13I	GGNCC	1 cut(s)	394
CviAII	CATG	4 cut(s)	80, 155, 398, 421
CviJI	RGCY	7 cut(s)	46, 379, 428, 461, 485, 491, 611
CviKI_1	RGCY	7 cut(s)	46, 379, 428, 461, 485, 491, 611
DdeI	CTNAG	4 cut(s)	345, 455, 492, 612
DpnI	GATC	3 cut(s)	178, 254, 578
DpnII	GATC	3 cut(s)	176, 252, 576
Eam1104I	CTCTTC	1 cut(s)	152
EarI	CTCTTC	1 cut(s)	152
Eco130I	CCWWGG	1 cut(s)	486
Eco147I	AGGCCT	1 cut(s)	485
Eco31I	GGTCTC	1 cut(s)	509
Eco32I	GATATC	1 cut(s)	281
Eco47I	GGWCC	1 cut(s)	394
EcoNI	CCTNNNNNAGG	1 cut(s)	645
EcoRII	CCWGG	1 cut(s)	640
EcoRV	GATATC	1 cut(s)	281
EcoT14I	CCWWGG	1 cut(s)	486
ErhI	CCWWGG	1 cut(s)	486
FaeI	CATG	4 cut(s)	83, 158, 401, 424
FalI	AAGNNNNNCTT	2 cut(s)	428, 460
FaqI	GGGAC	1 cut(s)	407
FatI	CATG	4 cut(s)	79, 154, 397, 420
Fnu4HI	GCNGC	3 cut(s)	165, 609, 700
FokI	GGATG	2 cut(s)	218, 485
Fsp4HI	GCNGC	3 cut(s)	165, 609, 700
GlaI	GCGC	1 cut(s)	350
GluI	GCNGC	3 cut(s)	165, 609, 700
HaeII	RGCGCY	1 cut(s)	352
HaeIII	GGCC	1 cut(s)	485
HapII	CCGG	1 cut(s)	54
HhaI	GCGC	1 cut(s)	351
Hin1II	CATG	4 cut(s)	83, 158, 401, 424
Hin6I	GCGC	1 cut(s)	349
HinP1I	GCGC	1 cut(s)	349
HinfI	GANTC	2 cut(s)	50, 404
HpaII	CCGG	1 cut(s)	54
HphI	GGTGA	2 cut(s)	283, 680
Hpy188I	TCNGA	3 cut(s)	115, 442, 469
Hpy188III	TCNNGA	4 cut(s)	421, 515, 614, 625
HpyAV	CCTTC	4 cut(s)	224, 494, 544, 647
HpyCH4III	ACNGT	1 cut(s)	241
HpyCH4V	TGCA	2 cut(s)	167, 299
HpyF10VI	GCNNNNNNNGC	5 cut(s)	100, 320, 533, 608, 617
HpyF3I	CTNAG	4 cut(s)	345, 455, 492, 612
Hsp92II	CATG	4 cut(s)	83, 158, 401, 424
HspAI	GCGC	1 cut(s)	349
Kzo9I	GATC	3 cut(s)	176, 252, 576
LmnI	GCTCC	2 cut(s)	274, 384
Lsp1109I	GCAGC	3 cut(s)	151, 620, 686
LweI	GCATC	2 cut(s)	103, 661
MalI	GATC	3 cut(s)	178, 254, 578
MboI	GATC	3 cut(s)	176, 252, 576
MboII	GAAGA	1 cut(s)	139
MflI	RGATCY	3 cut(s)	176, 252, 576
MhlI	GDGCHC	2 cut(s)	325, 632
MluCI	AATT	2 cut(s)	86, 386
MmeI	TCCRAC	1 cut(s)	465
MnlI	CCTC	5 cut(s)	302, 384, 463, 489, 686
MroXI	GAANNNNTTC	1 cut(s)	214
MseI	TTAA	1 cut(s)	569
MslI	CAYNNNNRTG	1 cut(s)	422
MspI	CCGG	1 cut(s)	54
MspR9I	CCNGG	1 cut(s)	642
MvaI	CCWGG	1 cut(s)	642
MvnI	CGCG	1 cut(s)	626
MwoI	GCNNNNNNNGC	5 cut(s)	100, 320, 533, 608, 617
NdeII	GATC	3 cut(s)	176, 252, 576
NlaIII	CATG	4 cut(s)	83, 158, 401, 424
NlaIV	GGNNCC	2 cut(s)	380, 395
NruI	TCGCGA	1 cut(s)	626
PagI	TCATGA	1 cut(s)	420
PceI	AGGCCT	1 cut(s)	485
PdmI	GAANNNNTTC	1 cut(s)	214
PfeI	GAWTC	2 cut(s)	50, 404
PkrI	GCNGC	3 cut(s)	166, 610, 701
Psp6I	CCWGG	1 cut(s)	640
PspGI	CCWGG	1 cut(s)	640
PspN4I	GGNNCC	2 cut(s)	380, 395
PspPI	GGNCC	1 cut(s)	394
PsuI	RGATCY	3 cut(s)	176, 252, 576
RruI	TCGCGA	1 cut(s)	626
RseI	CAYNNNNRTG	1 cut(s)	422
SaqAI	TTAA	1 cut(s)	569
SatI	GCNGC	3 cut(s)	165, 609, 700
Sau3AI	GATC	3 cut(s)	176, 252, 576
Sau96I	GGNCC	1 cut(s)	394
ScrFI	CCNGG	1 cut(s)	642
SduI	GDGCHC	2 cut(s)	325, 632
SetI	ASST	6 cut(s)	62, 377, 463, 505, 613, 697
SfaNI	GCATC	2 cut(s)	103, 661
SfcI	CTRYAG	1 cut(s)	304
SinI	GGWCC	1 cut(s)	394
SmiMI	CAYNNNNRTG	1 cut(s)	422
SmlI	CTYRAG	1 cut(s)	515
SmoI	CTYRAG	1 cut(s)	515
Sse9I	AATT	2 cut(s)	86, 386
SseBI	AGGCCT	1 cut(s)	485
SsiI	CCGC	1 cut(s)	401
SspI	AATATT	2 cut(s)	412, 544
StuI	AGGCCT	1 cut(s)	485
StyD4I	CCNGG	1 cut(s)	640
StyI	CCWWGG	1 cut(s)	486
TaaI	ACNGT	1 cut(s)	241
TaqI	TCGA	1 cut(s)	531
TasI	AATT	2 cut(s)	86, 386
TfiI	GAWTC	2 cut(s)	50, 404
Tru1I	TTAA	1 cut(s)	569
Tru9I	TTAA	1 cut(s)	569
TscAI	CASTG	3 cut(s)	301, 321, 609
TseI	GCWGC	3 cut(s)	164, 608, 699
TspDTI	ATGAA	1 cut(s)	96
TspGWI	ACGGA	1 cut(s)	371
TspRI	CASTG	3 cut(s)	301, 321, 609
VpaK11BI	GGWCC	1 cut(s)	394
XagI	CCTNNNNNAGG	1 cut(s)	645
XmnI	GAANNNNTTC	1 cut(s)	214

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.