Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0002078

Physical Location & Seq

Genomic Coordinates Forward (+)

23876486 .. 23878489

Gene Structure 2004 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G59150.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 654 bp

ATGGCGCATAGGGTAGAACAGGATTATGATTATTTGTTCAAGATCGTGTTGATTGGTGATTCTGGTGTCGGGAAAACAAACATCTTGTCTAGATTCACAAGGAATGAGTTTTGTTTGGAATCTAAGTCCACTATTGGTGTTGAATTCGCCACCAGAACTCTTCAGGTTGAAGGAAAGACTGTTAAGGCCCAGATATGGGACACTGCAGGTCAAGAGCGGTACAGAGCTATCACAAGTGCTTATTACAGAGGAGCGGTAGGTGCACTTCTTGTCTATGACATCACTAAAAGACAAACCTTTGACAATGTTCTGAGGTGGCTACGTGAACTAAGAGACCATGCGGATTCCAACATTGTGATCATGATGGCTGGGAACAAAGCTGATCTAAACCACTTGAGATCAGTTGCGGAGGAAGATGGACAGACTCTAGCTGAGACAGAAGGTCTCTCTTTCTTGGAGACATCAGCTCTTGAAGCCACCAATGTGGAGAAAGCATTTCAAACCGTGTTAGCAGAGATTTACCACATCATCAGCAAAAAAGCTTTGGCTGCTCAAGAAGCAGCGGCTGCTAATTCTGCCATTCCGGGGCAAGGAACAACGATTAACGTTGAAGACACATCTGGAGCTGGCAAAAGAGGTTGCTGCTCTACTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005829 GO:0005886 GO:0005911 GO:0008150 GO:0009504 GO:0009506 GO:0009987 GO:0012505 GO:0016020 GO:0030054 GO:0031410 GO:0031982 GO:0042546 GO:0043226 GO:0043227 GO:0043229 GO:0044085 GO:0044424 GO:0044444 GO:0044464 GO:0055044 GO:0071554 GO:0071840 GO:0071944 GO:0097708

KEGG Pathways

Metabolic & Signaling

ko04144 ko04152 ko04961 ko04962 ko04972 map04144 map04152 map04961 map04962 map04972

Pfam Domains

Protein Families

Ras

Protein Analysis

217

Amino Acids

23.82

Weight (kDa)

5.64

Isoelectric Point (pI)

37.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ras	PF00071	3 - 123	4.4e-44	Ras family
Arf	PF00025	4 - 116	4e-08	ADP-ribosylation factor family
Roc	PF08477	6 - 77	8.2e-19	Ras of Complex, Roc, domain of DAPkinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002078)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G07410 AT3G46830 AT3G46830 AT5G59150 AT5G59150
fragaria_vesca	FvH4_3g37150 FvH4_7g23580 FvH4_7g23580
malus_domestica	MD01G1141600.v1.1 MD03G1084700.v1.1 MD07G1205800.v1.1 MD11G1092300.v1.1
prunus_persica	Prupe.2G241900_v2.0.a1 Prupe.2G241900_v2.0.a1 Prupe.2G241900_v2.0.a1 Prupe.6G068000_v2.0.a1
pyrus_communis	pycom01g16190 pycom03g06690 pycom07g19270
rosa_chinensis	RchiOBHm_Chr1g0368751 RchiOBHm_Chr5g0042031 RchiOBHm_Chr5g0066871
rosa_laevigata	RLG00000027191 RLG00000035884
rosa_multiflora	Rmu_co8341881.1_g000001 Rmu_sc0000605.1_g000057 Rmu_sc0001791.1_g000018 Rmu_sc0005860.1_g000001 Rmu_sc0042332.1_g000001
rosa_roxburghii	Rroxscaffold_1G00014250 Rroxscaffold_4G00288300
rosa_rugosa	Rorug01G0344800 Rorug05G0379000 Rorug05G0379000 Rorug05G0379100
rosa_samantha	Rh1AG351800 Rh1BG315500 Rh1CG330200 Rh1DG347000 Rh5AG438800 Rh5BG455700 Rh5CG477800 Rh5DG470500
rosa_wichuraiana	Rw5G041030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	197
AccBSI	CCGCTC	2 cut(s)	217, 254
AciI	CCGC	5 cut(s)	217, 254, 341, 407, 563
AclI	AACGTT	1 cut(s)	606
AcsI	RAATTY	1 cut(s)	143
AcuI	CTGAAG	1 cut(s)	146
AfaI	GTAC	1 cut(s)	221
AfiI	CCNNNNNNNGG	4 cut(s)	195, 196, 585, 590
AgsI	TTSAA	6 cut(s)	40, 143, 170, 473, 500, 611
AhdI	GACNNNNNGTC	1 cut(s)	441
AleI	CACNNNNGTG	1 cut(s)	482
AluBI	AGCT	6 cut(s)	227, 380, 431, 467, 542, 626
AluI	AGCT	6 cut(s)	227, 380, 431, 467, 542, 626
Alw21I	GWGCWC	1 cut(s)	265
Alw26I	GTCTC	4 cut(s)	327, 428, 449, 452
Alw44I	GTGCAC	1 cut(s)	261
AlwNI	CAGNNNCTG	1 cut(s)	566
AoxI	GGCC	1 cut(s)	186
ApaLI	GTGCAC	1 cut(s)	261
ApeKI	GCWGC	4 cut(s)	548, 560, 566, 642
ApoI	RAATTY	1 cut(s)	143
ArsI	GACNNNNNNTTYG	2 cut(s)	71, 103
AspLEI	GCGC	1 cut(s)	7
AspS9I	GGNCC	1 cut(s)	187
AsuC2I	CCSGG	1 cut(s)	585
AsuHPI	GGTGA	1 cut(s)	68
BaeGI	GKGCMC	1 cut(s)	265
BarI	GAAGNNNNNNTAC	2 cut(s)	249, 281
BbsI	GAAGAC	1 cut(s)	618
Bbv12I	GWGCWC	1 cut(s)	265
BbvI	GCAGC	4 cut(s)	535, 553, 572, 629
BccI	CCATC	2 cut(s)	358, 410
BclI	TGATCA	1 cut(s)	357
BcnI	CCSGG	1 cut(s)	585
BcoDI	GTCTC	4 cut(s)	327, 428, 449, 452
BfaI	CTAG	2 cut(s)	90, 428
BfmI	CTRYAG	1 cut(s)	204
BfuAI	ACCTGC	1 cut(s)	197
BisI	GCNGC	5 cut(s)	549, 561, 564, 567, 643
BlsI	GCNGC	5 cut(s)	550, 562, 565, 568, 644
Bme1390I	CCNGG	1 cut(s)	585
BmeRI	GACNNNNNGTC	1 cut(s)	441
BmgT120I	GGNCC	1 cut(s)	187
BmrFI	CCNGG	1 cut(s)	585
BpiI	GAAGAC	1 cut(s)	618
BpmI	CTGGAG	1 cut(s)	642
BpuEI	CTTGAG	2 cut(s)	415, 537
BpuMI	CCSGG	1 cut(s)	585
BsaAI	YACGTR	1 cut(s)	323
BsaI	GGTCTC	2 cut(s)	327, 449
BsaJI	CCNNGG	1 cut(s)	584
Bsc4I	CCNNNNNNNGG	4 cut(s)	195, 196, 585, 590
BseDI	CCNNGG	1 cut(s)	584
BseLI	CCNNNNNNNGG	4 cut(s)	195, 196, 585, 590
BseMII	CTCAG	2 cut(s)	302, 423
BseRI	GAGGAG	1 cut(s)	264
BseSI	GKGCMC	1 cut(s)	265
BseXI	GCAGC	4 cut(s)	535, 553, 572, 629
BseYI	CCCAGC	1 cut(s)	368
BshFI	GGCC	1 cut(s)	188
BsiHKAI	GWGCWC	1 cut(s)	265
BsiSI	CCGG	1 cut(s)	584
BslFI	GGGAC	1 cut(s)	212
BslI	CCNNNNNNNGG	4 cut(s)	195, 196, 585, 590
BsmAI	GTCTC	4 cut(s)	327, 428, 449, 452
BsmFI	GGGAC	1 cut(s)	212
BsnI	GGCC	1 cut(s)	188
Bso31I	GGTCTC	2 cut(s)	327, 449
Bsp1286I	GDGCHC	1 cut(s)	265
Bsp143I	GATC	4 cut(s)	42, 357, 382, 398
BspACI	CCGC	5 cut(s)	217, 254, 341, 407, 563
BspANI	GGCC	1 cut(s)	188
BspCNI	CTCAG	2 cut(s)	303, 424
BspHI	TCATGA	1 cut(s)	360
BspMAI	CTGCAG	1 cut(s)	208
BspMI	ACCTGC	1 cut(s)	197
BspTNI	GGTCTC	2 cut(s)	327, 449
BsrBI	CCGCTC	2 cut(s)	217, 254
BssECI	CCNNGG	1 cut(s)	584
BssMI	GATC	4 cut(s)	42, 357, 382, 398
Bst4CI	ACNGT	2 cut(s)	181, 505
Bst6I	CTCTTC	1 cut(s)	165
BstAPI	GCANNNNNTGC	1 cut(s)	566
BstBAI	YACGTR	1 cut(s)	323
BstC8I	GCNNGC	1 cut(s)	628
BstDEI	CTNAG	4 cut(s)	123, 311, 329, 432
BstHHI	GCGC	1 cut(s)	7
BstKTI	GATC	4 cut(s)	45, 360, 385, 401
BstMAI	GTCTC	4 cut(s)	327, 428, 449, 452
BstMBI	GATC	4 cut(s)	42, 357, 382, 398
BstMWI	GCNNNNNNNGC	6 cut(s)	260, 473, 548, 557, 566, 575
BstSCI	CCNGG	1 cut(s)	583
BstSFI	CTRYAG	1 cut(s)	204
BstSLI	GKGCMC	1 cut(s)	265
BstV1I	GCAGC	4 cut(s)	535, 553, 572, 629
BstV2I	GAAGAC	1 cut(s)	618
BstXI	CCANNNNNNTGG	1 cut(s)	484
BsuRI	GGCC	1 cut(s)	188
BtsI	GCAGTG	1 cut(s)	201
BtsIMutI	CAGTG	1 cut(s)	201
BveI	ACCTGC	1 cut(s)	197
Cac8I	GCNNGC	1 cut(s)	628
CaiI	CAGNNNCTG	1 cut(s)	566
CciI	TCATGA	1 cut(s)	360
CfoI	GCGC	1 cut(s)	7
Cfr13I	GGNCC	1 cut(s)	187
Csp6I	GTAC	1 cut(s)	220
CviAII	CATG	2 cut(s)	338, 361
CviQI	GTAC	1 cut(s)	220
DdeI	CTNAG	4 cut(s)	123, 311, 329, 432
DpnI	GATC	4 cut(s)	44, 359, 384, 400
DpnII	GATC	4 cut(s)	42, 357, 382, 398
DriI	GACNNNNNGTC	1 cut(s)	441
Eam1104I	CTCTTC	1 cut(s)	165
Eam1105I	GACNNNNNGTC	1 cut(s)	441
EarI	CTCTTC	1 cut(s)	165
Eco31I	GGTCTC	2 cut(s)	327, 449
Eco57I	CTGAAG	1 cut(s)	146
EcoRI	GAATTC	1 cut(s)	143
FaeI	CATG	2 cut(s)	341, 364
FaiI	YATR	6 cut(s)	9, 27, 196, 276, 339, 362
FaqI	GGGAC	1 cut(s)	212
FatI	CATG	2 cut(s)	337, 360
FbaI	TGATCA	1 cut(s)	357
Fnu4HI	GCNGC	5 cut(s)	549, 561, 564, 567, 643
Fsp4HI	GCNGC	5 cut(s)	549, 561, 564, 567, 643
FspBI	CTAG	2 cut(s)	90, 428
GlaI	GCGC	1 cut(s)	6
GluI	GCNGC	5 cut(s)	549, 561, 564, 567, 643
GsaI	CCCAGC	1 cut(s)	372
GsuI	CTGGAG	1 cut(s)	642
HaeIII	GGCC	1 cut(s)	188
HapII	CCGG	1 cut(s)	584
HhaI	GCGC	1 cut(s)	7
Hin1II	CATG	2 cut(s)	341, 364
Hin6I	GCGC	1 cut(s)	5
HinP1I	GCGC	1 cut(s)	5
HindIII	AAGCTT	1 cut(s)	540
HinfI	GANTC	5 cut(s)	59, 93, 119, 344, 424
HpaII	CCGG	1 cut(s)	584
HphI	GGTGA	1 cut(s)	68
Hpy166II	GTNNAC	3 cut(s)	129, 263, 326
Hpy188I	TCNGA	1 cut(s)	312
Hpy188III	TCNNGA	8 cut(s)	40, 70, 90, 212, 361, 470, 554, 621
Hpy8I	GTNNAC	3 cut(s)	129, 263, 326
HpyAV	CCTTC	2 cut(s)	164, 434
HpyCH4III	ACNGT	2 cut(s)	181, 505
HpyCH4IV	ACGT	2 cut(s)	322, 606
HpyCH4V	TGCA	2 cut(s)	206, 263
HpyF10VI	GCNNNNNNNGC	6 cut(s)	260, 473, 548, 557, 566, 575
HpyF3I	CTNAG	4 cut(s)	123, 311, 329, 432
HpySE526I	ACGT	2 cut(s)	322, 606
Hsp92II	CATG	2 cut(s)	341, 364
HspAI	GCGC	1 cut(s)	5
Ksp22I	TGATCA	1 cut(s)	357
Kzo9I	GATC	4 cut(s)	42, 357, 382, 398
LmnI	GCTCC	2 cut(s)	251, 623
Lsp1109I	GCAGC	4 cut(s)	535, 553, 572, 629
MaeI	CTAG	2 cut(s)	90, 428
MaeII	ACGT	2 cut(s)	322, 606
MalI	GATC	4 cut(s)	44, 359, 384, 400
MbiI	CCGCTC	2 cut(s)	217, 254
MboI	GATC	4 cut(s)	42, 357, 382, 398
MboII	GAAGA	3 cut(s)	152, 425, 623
MhlI	GDGCHC	1 cut(s)	265
MluCI	AATT	2 cut(s)	143, 571
MlyI	GAGTC	1 cut(s)	418
MmeI	TCCRAC	1 cut(s)	372
MnlI	CCTC	4 cut(s)	242, 306, 403, 629
MseI	TTAA	3 cut(s)	183, 603, 652
MslI	CAYNNNNRTG	1 cut(s)	482
MspA1I	CMGCKG	1 cut(s)	563
MspI	CCGG	1 cut(s)	584
MspR9I	CCNGG	1 cut(s)	585
MwoI	GCNNNNNNNGC	6 cut(s)	260, 473, 548, 557, 566, 575
NciI	CCSGG	1 cut(s)	585
NdeII	GATC	4 cut(s)	42, 357, 382, 398
NlaIII	CATG	2 cut(s)	341, 364
OliI	CACNNNNGTG	1 cut(s)	482
PagI	TCATGA	1 cut(s)	360
PfeI	GAWTC	4 cut(s)	59, 93, 119, 344
PkrI	GCNGC	5 cut(s)	550, 562, 565, 568, 644
PleI	GAGTC	1 cut(s)	418
PpsI	GAGTC	1 cut(s)	418
Ppu21I	YACGTR	1 cut(s)	323
Psp1406I	AACGTT	1 cut(s)	606
PspFI	CCCAGC	1 cut(s)	368
PspPI	GGNCC	1 cut(s)	187
PstI	CTGCAG	1 cut(s)	208
PstNI	CAGNNNCTG	1 cut(s)	566
RsaI	GTAC	1 cut(s)	221
RsaNI	GTAC	1 cut(s)	220
RseI	CAYNNNNRTG	1 cut(s)	482
SaqAI	TTAA	3 cut(s)	183, 603, 652
SatI	GCNGC	5 cut(s)	549, 561, 564, 567, 643
Sau3AI	GATC	4 cut(s)	42, 357, 382, 398
Sau96I	GGNCC	1 cut(s)	187
SchI	GAGTC	1 cut(s)	418
ScrFI	CCNGG	1 cut(s)	585
SduI	GDGCHC	1 cut(s)	265
SfcI	CTRYAG	1 cut(s)	204
SmiMI	CAYNNNNRTG	1 cut(s)	482
SmlI	CTYRAG	2 cut(s)	394, 552
SmoI	CTYRAG	2 cut(s)	394, 552
Sse9I	AATT	2 cut(s)	143, 571
SsiI	CCGC	5 cut(s)	217, 254, 341, 407, 563
SspMI	CTAG	2 cut(s)	90, 428
StyD4I	CCNGG	1 cut(s)	583
TaaI	ACNGT	2 cut(s)	181, 505
TaiI	ACGT	2 cut(s)	325, 609
TasI	AATT	2 cut(s)	143, 571
TauI	GCSGC	1 cut(s)	566
TfiI	GAWTC	4 cut(s)	59, 93, 119, 344
Tru1I	TTAA	3 cut(s)	183, 603, 652
Tru9I	TTAA	3 cut(s)	183, 603, 652
TscAI	CASTG	1 cut(s)	208
TseI	GCWGC	4 cut(s)	548, 560, 566, 642
TspRI	CASTG	1 cut(s)	208
VneI	GTGCAC	1 cut(s)	261
XapI	RAATTY	1 cut(s)	143
XbaI	TCTAGA	1 cut(s)	89
XspI	CTAG	2 cut(s)	90, 428

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.