Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0002078

Physical Location & Seq

Genomic Coordinates Forward (+)

17564412 .. 17566715

Gene Structure 2304 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00014250.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 681 bp

ATGGCGAGCAGAGTGGACCACGAGTACGATTACTTGTTCAAGATCGTGTTGATCGGGGACTCTGGAGTTGGCAAATCCAACATTCTCTCCAGGTTCACCAGAAATGAGTTCTGCTTGGAGTCCAAGTCCACCATCGGCGTCGAGTTCGCCACCAGAACTCTTCAGGTTGAAGGAAAACTGTCAAGGCACAGATCTGGGATACAGCAGGGCAGGAGCGATATCGTGCTATCACCAGTGCATACTATAGAGGGGCAGTGGGTGCTCTCCTTCACCAGTCTATCTAGGGGCTGGGTGCTCTCCTTGTCTAACATAACTAAGCGCCCAACATTTGATAATGTTCAAAGGTGGCTCCGTGAATTGAGGGACCATGCGGATTCTAATATTGTCATCATGATGGCTGGAAATAAGTCCGACTTGAACCATCTTAGAGCTGTTTCAGAGGATGATGGTCAGGCCTTGGCTGAGAGGGAAGGTCTCTCATTTCTTGAGACATCAGCACTCGAAGCAACCAATATTGAGAAGGCATTTCAAACTATTTTAACAGAGATCTACCATATCATTAGCAAAAAGGCACTGGCAGCTCAGGAAGCAGTCGCGAGCACTACCCTTCCTGGTCAAGGAACTACTATCAATGTTGGTGATGCTTCTGGGAATACGAAAAGAGGTTGCTGCTCTACATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005829 GO:0005886 GO:0005911 GO:0008150 GO:0009504 GO:0009506 GO:0009987 GO:0012505 GO:0016020 GO:0030054 GO:0031410 GO:0031982 GO:0042546 GO:0043226 GO:0043227 GO:0043229 GO:0044085 GO:0044424 GO:0044444 GO:0044464 GO:0055044 GO:0071554 GO:0071840 GO:0071944 GO:0097708

KEGG Pathways

Metabolic & Signaling

ko04144 ko04152 ko04961 ko04962 ko04972 map04144 map04152 map04961 map04962 map04972

Pfam Domains

Protein Families

Ras

Protein Analysis

226

Amino Acids

24.89

Weight (kDa)

6.6

Isoelectric Point (pI)

52.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ras	PF00071	14 - 59	4e-12	Ras family
Roc	PF08477	14 - 58	1.9e-10	Ras of Complex, Roc, domain of DAPkinase
Ras	PF00071	102 - 184	1.1e-22	Ras family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002078)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G07410 AT3G46830 AT3G46830 AT5G59150 AT5G59150
fragaria_vesca	FvH4_3g37150 FvH4_7g23580 FvH4_7g23580
malus_domestica	MD01G1141600.v1.1 MD03G1084700.v1.1 MD07G1205800.v1.1 MD11G1092300.v1.1
prunus_persica	Prupe.2G241900_v2.0.a1 Prupe.2G241900_v2.0.a1 Prupe.2G241900_v2.0.a1 Prupe.6G068000_v2.0.a1
pyrus_communis	pycom01g16190 pycom03g06690 pycom07g19270
rosa_chinensis	RchiOBHm_Chr1g0368751 RchiOBHm_Chr5g0042031 RchiOBHm_Chr5g0066871
rosa_laevigata	RLG00000027191 RLG00000035884
rosa_multiflora	Rmu_co8341881.1_g000001 Rmu_sc0000605.1_g000057 Rmu_sc0001791.1_g000018 Rmu_sc0005860.1_g000001 Rmu_sc0042332.1_g000001
rosa_roxburghii	Rroxscaffold_1G00014250 Rroxscaffold_4G00288300
rosa_rugosa	Rorug01G0344800 Rorug05G0379000 Rorug05G0379000 Rorug05G0379100
rosa_samantha	Rh1AG351800 Rh1BG315500 Rh1CG330200 Rh1DG347000 Rh5AG438800 Rh5BG455700 Rh5CG477800 Rh5DG470500
rosa_wichuraiana	Rw5G041030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	596
AciI	CCGC	1 cut(s)	371
AcuI	CTGAAG	1 cut(s)	146
AcyI	GRCGYC	1 cut(s)	138
AfaI	GTAC	1 cut(s)	26
AfiI	CCNNNNNNNGG	1 cut(s)	617
AgsI	TTSAA	5 cut(s)	40, 170, 341, 418, 530
AjnI	CCWGG	2 cut(s)	89, 610
AluBI	AGCT	2 cut(s)	431, 581
AluI	AGCT	2 cut(s)	431, 581
Alw21I	GWGCWC	3 cut(s)	264, 297, 602
Alw26I	GTCTC	2 cut(s)	479, 482
AoxI	GGCC	1 cut(s)	453
ApeKI	GCWGC	2 cut(s)	578, 669
AspLEI	GCGC	1 cut(s)	321
AspS9I	GGNCC	2 cut(s)	16, 364
AsuHPI	GGTGA	4 cut(s)	88, 222, 262, 650
AvaII	GGWCC	2 cut(s)	16, 364
BauI	CACGAG	1 cut(s)	20
Bbv12I	GWGCWC	3 cut(s)	264, 297, 602
BbvI	GCAGC	2 cut(s)	590, 656
BccI	CCATC	4 cut(s)	140, 388, 429, 440
BciT130I	CCWGG	2 cut(s)	91, 612
BciVI	GTATCC	1 cut(s)	192
BcoDI	GTCTC	2 cut(s)	479, 482
BfaI	CTAG	1 cut(s)	282
BfmI	CTRYAG	1 cut(s)	243
BfoI	RGCGCY	1 cut(s)	322
BfuI	GTATCC	1 cut(s)	192
BglII	AGATCT	2 cut(s)	191, 546
BisI	GCNGC	2 cut(s)	579, 670
BlsI	GCNGC	2 cut(s)	580, 671
Bme1390I	CCNGG	2 cut(s)	91, 612
Bme18I	GGWCC	2 cut(s)	16, 364
BmgT120I	GGNCC	2 cut(s)	16, 364
BmiI	GGNNCC	2 cut(s)	350, 365
BmrFI	CCNGG	2 cut(s)	91, 612
BmsI	GCATC	1 cut(s)	631
BpmI	CTGGAG	2 cut(s)	73, 84
Bpu10I	CCTNAGC	1 cut(s)	582
BpuEI	CTTGAG	1 cut(s)	506
BsaHI	GRCGYC	1 cut(s)	138
BsaI	GGTCTC	1 cut(s)	479
BsaJI	CCNNGG	1 cut(s)	456
BsaXI	ACNNNNNCTCC	4 cut(s)	71, 101, 110, 140
Bsc4I	CCNNNNNNNGG	1 cut(s)	617
Bse1I	ACTGG	3 cut(s)	233, 273, 579
BseBI	CCWGG	2 cut(s)	91, 612
BseDI	CCNNGG	1 cut(s)	456
BseGI	GGATG	1 cut(s)	448
BseLI	CCNNNNNNNGG	1 cut(s)	617
BseMII	CTCAG	2 cut(s)	453, 596
BseNI	ACTGG	3 cut(s)	233, 273, 579
BseXI	GCAGC	2 cut(s)	590, 656
BseYI	CCCAGC	1 cut(s)	288
Bsh1236I	CGCG	1 cut(s)	596
BshFI	GGCC	1 cut(s)	455
BsiHKAI	GWGCWC	3 cut(s)	264, 297, 602
BslFI	GGGAC	2 cut(s)	71, 377
BslI	CCNNNNNNNGG	1 cut(s)	617
BsmAI	GTCTC	2 cut(s)	479, 482
BsmFI	GGGAC	2 cut(s)	71, 377
BsnI	GGCC	1 cut(s)	455
Bso31I	GGTCTC	1 cut(s)	479
Bsp1286I	GDGCHC	3 cut(s)	264, 297, 602
Bsp143I	GATC	4 cut(s)	42, 51, 191, 546
Bsp68I	TCGCGA	1 cut(s)	596
BspACI	CCGC	1 cut(s)	371
BspANI	GGCC	1 cut(s)	455
BspCNI	CTCAG	2 cut(s)	454, 595
BspFNI	CGCG	1 cut(s)	596
BspHI	TCATGA	1 cut(s)	390
BspLI	GGNNCC	2 cut(s)	350, 365
BspTNI	GGTCTC	1 cut(s)	479
BsrI	ACTGG	3 cut(s)	233, 273, 579
BssECI	CCNNGG	1 cut(s)	456
BssMI	GATC	4 cut(s)	42, 51, 191, 546
BssNI	GRCGYC	1 cut(s)	138
BssSI	CACGAG	1 cut(s)	20
BssT1I	CCWWGG	1 cut(s)	456
Bst2BI	CACGAG	1 cut(s)	20
Bst2UI	CCWGG	2 cut(s)	91, 612
Bst4CI	ACNGT	1 cut(s)	180
Bst6I	CTCTTC	1 cut(s)	165
BstACI	GRCGYC	1 cut(s)	138
BstAPI	GCANNNNNTGC	1 cut(s)	259
BstC8I	GCNNGC	2 cut(s)	7, 598
BstDEI	CTNAG	4 cut(s)	315, 425, 462, 582
BstENI	CCTNNNNNAGG	1 cut(s)	615
BstF5I	GGATG	1 cut(s)	448
BstFNI	CGCG	1 cut(s)	596
BstH2I	RGCGCY	1 cut(s)	322
BstHHI	GCGC	1 cut(s)	321
BstKTI	GATC	4 cut(s)	45, 54, 194, 549
BstMAI	GTCTC	2 cut(s)	479, 482
BstMBI	GATC	4 cut(s)	42, 51, 191, 546
BstMWI	GCNNNNNNNGC	4 cut(s)	259, 503, 578, 587
BstNI	CCWGG	2 cut(s)	91, 612
BstSCI	CCNGG	2 cut(s)	89, 610
BstSFI	CTRYAG	1 cut(s)	243
BstUI	CGCG	1 cut(s)	596
BstV1I	GCAGC	2 cut(s)	590, 656
BstX2I	RGATCY	2 cut(s)	191, 546
BstYI	RGATCY	2 cut(s)	191, 546
BsuI	GTATCC	1 cut(s)	192
BsuRI	GGCC	1 cut(s)	455
BtsCI	GGATG	1 cut(s)	448
BtsI	GCAGTG	1 cut(s)	260
BtsIMutI	CAGTG	3 cut(s)	240, 260, 572
BtuMI	TCGCGA	1 cut(s)	596
Cac8I	GCNNGC	2 cut(s)	7, 598
CciI	TCATGA	1 cut(s)	390
CfoI	GCGC	1 cut(s)	321
Cfr13I	GGNCC	2 cut(s)	16, 364
CseI	GACGC	1 cut(s)	127
Csp6I	GTAC	1 cut(s)	25
CviAII	CATG	2 cut(s)	368, 391
CviJI	RGCY	7 cut(s)	288, 349, 398, 431, 455, 461, 581
CviKI_1	RGCY	7 cut(s)	288, 349, 398, 431, 455, 461, 581
CviQI	GTAC	1 cut(s)	25
DdeI	CTNAG	4 cut(s)	315, 425, 462, 582
DpnI	GATC	4 cut(s)	44, 53, 193, 548
DpnII	GATC	4 cut(s)	42, 51, 191, 546
Eam1104I	CTCTTC	1 cut(s)	165
EarI	CTCTTC	1 cut(s)	165
Eco130I	CCWWGG	1 cut(s)	456
Eco147I	AGGCCT	1 cut(s)	455
Eco31I	GGTCTC	1 cut(s)	479
Eco32I	GATATC	1 cut(s)	220
Eco47I	GGWCC	2 cut(s)	16, 364
Eco57I	CTGAAG	1 cut(s)	146
EcoNI	CCTNNNNNAGG	1 cut(s)	615
EcoRII	CCWGG	2 cut(s)	89, 610
EcoRV	GATATC	1 cut(s)	220
EcoT14I	CCWWGG	1 cut(s)	456
ErhI	CCWWGG	1 cut(s)	456
FaeI	CATG	2 cut(s)	371, 394
FaiI	YATR	7 cut(s)	240, 245, 311, 369, 392, 555, 679
FalI	AAGNNNNNCTT	2 cut(s)	398, 430
FaqI	GGGAC	2 cut(s)	71, 377
FatI	CATG	2 cut(s)	367, 390
Fnu4HI	GCNGC	2 cut(s)	579, 670
FokI	GGATG	1 cut(s)	455
Fsp4HI	GCNGC	2 cut(s)	579, 670
FspBI	CTAG	1 cut(s)	282
GlaI	GCGC	1 cut(s)	320
GluI	GCNGC	2 cut(s)	579, 670
GsaI	CCCAGC	1 cut(s)	292
GsuI	CTGGAG	2 cut(s)	73, 84
HaeII	RGCGCY	1 cut(s)	322
HaeIII	GGCC	1 cut(s)	455
HgaI	GACGC	1 cut(s)	127
HhaI	GCGC	1 cut(s)	321
Hin1I	GRCGYC	1 cut(s)	138
Hin1II	CATG	2 cut(s)	371, 394
Hin6I	GCGC	1 cut(s)	319
HinP1I	GCGC	1 cut(s)	319
HinfI	GANTC	3 cut(s)	59, 119, 374
HphI	GGTGA	4 cut(s)	88, 222, 262, 650
Hpy166II	GTNNAC	3 cut(s)	16, 96, 129
Hpy188I	TCNGA	2 cut(s)	412, 439
Hpy188III	TCNNGA	6 cut(s)	40, 63, 391, 485, 584, 595
Hpy8I	GTNNAC	3 cut(s)	16, 96, 129
Hpy99I	CGWCG	1 cut(s)	143
HpyAV	CCTTC	5 cut(s)	164, 277, 464, 514, 617
HpyCH4III	ACNGT	1 cut(s)	180
HpyCH4V	TGCA	1 cut(s)	238
HpyF10VI	GCNNNNNNNGC	4 cut(s)	259, 503, 578, 587
HpyF3I	CTNAG	4 cut(s)	315, 425, 462, 582
Hsp92I	GRCGYC	1 cut(s)	138
Hsp92II	CATG	2 cut(s)	371, 394
HspAI	GCGC	1 cut(s)	319
Kzo9I	GATC	4 cut(s)	42, 51, 191, 546
LmnI	GCTCC	2 cut(s)	213, 354
Lsp1109I	GCAGC	2 cut(s)	590, 656
LweI	GCATC	1 cut(s)	631
MaeI	CTAG	1 cut(s)	282
MalI	GATC	4 cut(s)	44, 53, 193, 548
MboI	GATC	4 cut(s)	42, 51, 191, 546
MboII	GAAGA	1 cut(s)	152
MflI	RGATCY	2 cut(s)	191, 546
MhlI	GDGCHC	3 cut(s)	264, 297, 602
MluCI	AATT	1 cut(s)	356
MlyI	GAGTC	2 cut(s)	53, 128
MmeI	TCCRAC	2 cut(s)	102, 435
MnlI	CCTC	5 cut(s)	241, 354, 433, 459, 656
MseI	TTAA	1 cut(s)	539
MslI	CAYNNNNRTG	1 cut(s)	392
MspR9I	CCNGG	2 cut(s)	91, 612
MvaI	CCWGG	2 cut(s)	91, 612
MvnI	CGCG	1 cut(s)	596
MwoI	GCNNNNNNNGC	4 cut(s)	259, 503, 578, 587
NdeII	GATC	4 cut(s)	42, 51, 191, 546
NlaIII	CATG	2 cut(s)	371, 394
NlaIV	GGNNCC	2 cut(s)	350, 365
NruI	TCGCGA	1 cut(s)	596
PagI	TCATGA	1 cut(s)	390
PceI	AGGCCT	1 cut(s)	455
PfeI	GAWTC	1 cut(s)	374
PkrI	GCNGC	2 cut(s)	580, 671
PleI	GAGTC	2 cut(s)	53, 127
PpsI	GAGTC	2 cut(s)	53, 127
Psp6I	CCWGG	2 cut(s)	89, 610
PspFI	CCCAGC	1 cut(s)	288
PspGI	CCWGG	2 cut(s)	89, 610
PspN4I	GGNNCC	2 cut(s)	350, 365
PspPI	GGNCC	2 cut(s)	16, 364
PsuI	RGATCY	2 cut(s)	191, 546
RruI	TCGCGA	1 cut(s)	596
RsaI	GTAC	1 cut(s)	26
RsaNI	GTAC	1 cut(s)	25
RseI	CAYNNNNRTG	1 cut(s)	392
SaqAI	TTAA	1 cut(s)	539
SatI	GCNGC	2 cut(s)	579, 670
Sau3AI	GATC	4 cut(s)	42, 51, 191, 546
Sau96I	GGNCC	2 cut(s)	16, 364
SchI	GAGTC	2 cut(s)	53, 128
ScrFI	CCNGG	2 cut(s)	91, 612
SduI	GDGCHC	3 cut(s)	264, 297, 602
SetI	ASST	7 cut(s)	95, 168, 347, 433, 475, 583, 667
SfaNI	GCATC	1 cut(s)	631
SfcI	CTRYAG	1 cut(s)	243
SinI	GGWCC	2 cut(s)	16, 364
SmiMI	CAYNNNNRTG	1 cut(s)	392
SmlI	CTYRAG	1 cut(s)	485
SmoI	CTYRAG	1 cut(s)	485
Sse9I	AATT	1 cut(s)	356
SseBI	AGGCCT	1 cut(s)	455
SsiI	CCGC	1 cut(s)	371
SspI	AATATT	2 cut(s)	382, 514
SspMI	CTAG	1 cut(s)	282
StuI	AGGCCT	1 cut(s)	455
StyD4I	CCNGG	2 cut(s)	89, 610
StyI	CCWWGG	1 cut(s)	456
TaaI	ACNGT	1 cut(s)	180
TaqI	TCGA	2 cut(s)	141, 501
TasI	AATT	1 cut(s)	356
TfiI	GAWTC	1 cut(s)	374
Tru1I	TTAA	1 cut(s)	539
Tru9I	TTAA	1 cut(s)	539
TscAI	CASTG	3 cut(s)	240, 260, 579
TseI	GCWGC	2 cut(s)	578, 669
TspGWI	ACGGA	1 cut(s)	341
TspRI	CASTG	3 cut(s)	240, 260, 579
VpaK11BI	GGWCC	2 cut(s)	16, 364
XagI	CCTNNNNNAGG	1 cut(s)	615
XspI	CTAG	1 cut(s)	282

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.